View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_14 (Length: 350)
Name: NF9951_low_14
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 5434326 - 5434651
Alignment:
| Q |
18 |
atagtgaaggacattgaatttcgacatttaaatatagatgaaaatgttaaaacccttgatagaaatatacacaccgcaagaagatctccttnnnnnnn-g |
116 |
Q |
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| T |
5434326 |
atagtgaaggacattgaatttcgacatttaaatatagatgaaaatgttaaaacccttgatagaaatatacacaccgcaagaagatctccttagaaaaaag |
5434425 |
T |
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| Q |
117 |
ctacgaagcaggtccaggatgatctattgtgaaggacaatgaatttccacacttgaatatggatgaaaaatgtcaaaacccttttgtagaacaacattaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5434426 |
ctacgaagcaggtccaggatgatctattgtgaaggacaatgaatttccaaacttgaatatggatgaaaaatgtcaaaacccttttgtagaacaacattaa |
5434525 |
T |
|
| Q |
217 |
agcacatgaaaagaacagcctgtcttccttcatggaaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5434526 |
agcacatgaaaagaacagcctgtcttccttcatggaaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctt |
5434625 |
T |
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| Q |
317 |
tttaatgcagaaaaaccacaacacca |
342 |
Q |
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| T |
5434626 |
tttaatgcagaaaaaccacaacacca |
5434651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 536151 - 536210
Alignment:
| Q |
282 |
agcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacc |
341 |
Q |
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| T |
536151 |
agcaaatatagcaaagagtctaaaacttcattgtttttagtgcagaaaaaccacaacacc |
536210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 555385 - 555311
Alignment:
| Q |
257 |
aaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaa-cttaattctttttaatgcagaaaa |
330 |
Q |
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|||||||||| ||| |||||| | ||||||||| ||||| || |||||| ||| |||||||||||||||||||| |
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| T |
555385 |
aaaatcagaagcaaacaacaaaggtagcaaatatggaaaacaggctaaaaacttcattctttttaatgcagaaaa |
555311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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