View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_16 (Length: 334)
Name: NF9951_low_16
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 1161995 - 1161685
Alignment:
| Q |
6 |
gtttggtggttaggactattactattaaatgtattaggtggttaagacaaaattttaactatttaacgtattagtactctcaaatcatacaagaattttc |
105 |
Q |
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| T |
1161995 |
gtttggtagttaggactattactattaaacgtattaggtggttaagacaaaattttaactatttaacgtattagtactctcaaatcatacaagaattttc |
1161896 |
T |
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| Q |
106 |
cagcagacacagctgcaacaactcctttgtcttaagcaattgaagaaagtgcaatatggggaagaaggaaagcataagctccattggtgtcgtttccaat |
205 |
Q |
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| T |
1161895 |
cagcagacacagctgcaacaactcctttgtcttaagcaattgaagaaagtgcaatatggggaagaaggaaagcataagctccattggtgtcgtttccaat |
1161796 |
T |
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| Q |
206 |
ttcatgtcgacaacaaagaaattatgtgtgtagccgcagacgtagagtgagtgagaaaggaaccatccatgtgctatgcaatgcacataaccaagttagc |
305 |
Q |
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| T |
1161795 |
ttcatgtcgacaacaaagaaattatgtgtgtagccgcagacatagagtgagtgagaaaggaaccatccatgtgctatgcaatgcacataaccaagtcagc |
1161696 |
T |
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| Q |
306 |
tacagcatggt |
316 |
Q |
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| T |
1161695 |
tacagcatggt |
1161685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 879403 - 879536
Alignment:
| Q |
175 |
aagcataagctccattggtgtcgtttccaatttcatgtcgacaacaaagaaattatgtgtgtagccgcag-acgtagagtgagtgagaaaggaaccatcc |
273 |
Q |
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| T |
879403 |
aagcataaacaccattggtgccgttcgtaatttcatatcgacaaccaagaaattacgtgtgtagtcgcaggacgtagaatgagtgagaaaggaagcatc- |
879501 |
T |
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| Q |
274 |
atgtgctatgcaatgcacataaccaagttagctac |
308 |
Q |
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| T |
879502 |
atgtgctatgcaatgcacataaccaattcagctac |
879536 |
T |
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