View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_20 (Length: 263)
Name: NF9951_low_20
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 51080671 - 51080439
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttccttcaattttttatttatttattaataactaagcctctgcataatacga |
120 |
Q |
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| T |
51080671 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctgtcctttaattttttttttatt----aataactaagtctctgcataatacga |
51080576 |
T |
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| Q |
121 |
atacaaacaagcaagatnnnnnnnncaacacagtaaaagatgccatatataaaaggaacatccaatatgaaactcatacaccttgtacatcaaaccaatc |
220 |
Q |
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| T |
51080575 |
atacaaacaagcaagataaaaaaaacaacgcagtaaaagacgccatatataaaaggaacatccaatataaaactcatacgccttgtacatcaaaccaatc |
51080476 |
T |
|
| Q |
221 |
aataaagattccactccaactgatgactaccaccaaa |
257 |
Q |
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| T |
51080475 |
aataaagattccactccaagtgatgactaccaccaaa |
51080439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 30652285 - 30652232
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttcctt |
74 |
Q |
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| T |
30652285 |
accgtcatgtatttgacatattttatctattgaaatgaattgatttgtttcctt |
30652232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 38999003 - 38999056
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttcctt |
74 |
Q |
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| T |
38999003 |
accgtcatgtatttggcatcttttgagtaatgaaatgaattgatttctttcctt |
38999056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 37796717 - 37796767
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttc |
71 |
Q |
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| T |
37796717 |
accgtcatgtatttggcatcttttgagtaatgaaataaattgatttctttc |
37796767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 27527466 - 27527522
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttccttcaa |
77 |
Q |
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| T |
27527466 |
accgtcatgtatttgacaaattttatctattgaaatgaattgatttgtttccttcaa |
27527522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 40287016 - 40286963
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttcctt |
74 |
Q |
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| T |
40287016 |
accgtcatgtatttgacatcttttgagtaatgaaatgaattaatttctttcctt |
40286963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 32163192 - 32163251
Alignment:
| Q |
23 |
cgtcatgtatttgacatcttttgagtaatgaaatgaattgatttctttccttcaatttttt |
83 |
Q |
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| T |
32163192 |
cgtcatgtatatgacatcttttgagtaacgaaatgaattgatttctttcctt-aatttttt |
32163251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 14035075 - 14035038
Alignment:
| Q |
21 |
accgtcatgtatttgacatcttttgagtaatgaaatga |
58 |
Q |
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| T |
14035075 |
accgtcatgtatttgacatcttttgagtaatgaaatga |
14035038 |
T |
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