View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9951_low_23 (Length: 248)

Name: NF9951_low_23
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9951_low_23
NF9951_low_23
[»] chr3 (19 HSPs)
chr3 (1-244)||(46236650-46236893)
chr3 (1-241)||(46484077-46484314)
chr3 (11-237)||(5160313-5160536)
chr3 (1-241)||(46473958-46474195)
chr3 (1-237)||(46490738-46490971)
chr3 (1-187)||(46497977-46498160)
chr3 (17-239)||(47397169-47397388)
chr3 (18-240)||(45883593-45883814)
chr3 (1-241)||(46479819-46480056)
chr3 (17-127)||(45902999-45903109)
chr3 (29-127)||(47414163-47414261)
chr3 (11-96)||(5156284-5156369)
chr3 (1-240)||(46526285-46526521)
chr3 (148-240)||(46539170-46539262)
chr3 (162-240)||(46554044-46554122)
chr3 (17-67)||(51943935-51943985)
chr3 (1-67)||(46531948-46532014)
chr3 (18-108)||(46554173-46554263)
chr3 (148-240)||(16025657-16025749)
[»] chr8 (2 HSPs)
chr8 (1-240)||(9692578-9692814)
chr8 (18-240)||(9675556-9675775)
[»] chr4 (4 HSPs)
chr4 (4-129)||(35155450-35155575)
chr4 (1-240)||(35162468-35162703)
chr4 (3-114)||(15556043-15556154)
chr4 (163-240)||(15556200-15556277)
[»] chr2 (4 HSPs)
chr2 (148-238)||(20144802-20144892)
chr2 (148-238)||(20359312-20359402)
chr2 (148-238)||(20168882-20168972)
chr2 (24-114)||(20359179-20359269)
[»] chr7 (6 HSPs)
chr7 (1-195)||(16722179-16722370)
chr7 (1-195)||(17699193-17699384)
chr7 (44-195)||(17708345-17708493)
chr7 (44-195)||(17718169-17718317)
chr7 (155-195)||(17736107-17736147)
chr7 (155-195)||(17745287-17745327)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46236893 - 46236650
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  46236893 ccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttgtcaaccttggttgagaagctggcttctg 46236794  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46236793 aatttgagttaccagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttggaattgaaactac 46236694  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctctgctg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46236693 taatacgatgaaggagttaggagtgattttacctttctctgctg 46236650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46484077 - 46484314
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||| ||||| ||||||  ||| |||||||  ||||||||||| |||||||||||| |||  |||  |||||||| ||| |||||||||    
T  46484077 ccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctg 46484176  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    ||||||| |||||| ||||||| ||||||    || | |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||| |    
T  46484177 aatttgatttactacaacacaagcttcct---tttgataaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaacttc 46484273  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctctg 241  Q
    |  || | | |||||| |||| ||| |||||||||||||||    
T  46484274 tgttatgctaaaggagctaggtgtggttttacctttctctg 46484314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 5160313 - 5160536
Alignment:
Q  11 aaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagtt 110  Q
    ||||||||||| |||||| |||||||||||| ||||| |||||| ||||||||||||   |||| || |||||| ||||| |||||||||||| ||||||    
T  5160313 aaggcaaagataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagtt 5160412  T
Q  111 actagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatg 210  Q
    |||| | ||||   ||| |||   | || ||   |  |||||||| ||||  |||||||||||||| ||||| |||| | |||||||| || ||| | ||    
T  5160413 actacaccacaggtttcatcttcctgaagaa---gaagtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctg 5160509  T
Q  211 aaggagttaggagtgattttacctttc 237  Q
    |||||||||||||||| ||||||||||    
T  5160510 aaggagttaggagtgactttacctttc 5160536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46473958 - 46474195
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||| ||||| ||||||  ||| |||||||  ||||||||||| |||||||||||| |||  |||  |||||||| ||| |||||||||    
T  46473958 ccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggcttccaagtttggttgaaaaggtggcttctg 46474057  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    ||| ||| |||||| ||||||| ||||||    || | |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||| |    
T  46474058 aatctgatttactacaacacaagcttcct---tttgataaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaacttc 46474154  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctctg 241  Q
      ||| | | |||||| |||| ||| |||||||||||||||    
T  46474155 cgatatgctaaaggagctaggtgtggttttacctttctctg 46474195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46490738 - 46490971
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||| ||||| ||||| ||||  |||||||  ||||||||||| |||||||||||| |||| |||| ||| |||||||| |||||||||    
T  46490738 ccttataagcaaggcgaagataagcgtgaatttactatgtacttttttcttccaaatgcaaaagatgggctgccaactttgcttgagaagttggcttctg 46490837  T
Q  101 aatttgagttactagaacacaatcttcctctcat-taaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaacta 199  Q
    |||  |||| |||| ||||||| ||||    ||| | | | ||||| ||||||||| || | ||| ||||| ||||||||||| |||||  ||||||||     
T  46490838 aatcggagtcactaaaacacaagcttc----catatgatagagtggaggtaggtgactttaggatcccaaggttcaatatttcatttggacttgaaactt 46490933  T
Q  200 ctaatacgatgaaggagttaggagtgattttacctttc 237  Q
    || ||| | |||||||| | || ||| |||||||||||    
T  46490934 ctgatatgctgaaggagctgggcgtggttttacctttc 46490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 46497977 - 46498160
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||| ||||  ||||||||||  | |||||  ||||||||||| |||||||||||| |||| |||| ||| |||||||||| ||||| |    
T  46497977 ccttataagcaaggcgaagacaagcgtcaatttacgatgtacttttttcttccaaatgcaaaagatgggctgccaactttgcttgagaagcttgcttccg 46498076  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttg 187  Q
    ||| |||||||||  ||||||| |||||||   || | |||||||  |||||||| || | ||||||||| ||||||||||| ||||    
T  46498077 aatctgagttactgcaacacaagcttcctc---ttgacaaagtggaagtaggtgactttaggattccaaggttcaatatttcatttg 46498160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 47397388 - 47397169
Alignment:
Q  17 aagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactaga 116  Q
    ||||| |||| || ||||| ||||| |||||||||||| ||||||||||||   || ||   |||||||||||  |||||||| ||||||||||||||||    
T  47397388 aagataagcgccatttctccatgtacatttttcttccaaatgcaaaagatggattgacagatttggttgagaacatggcttctaaatttgagttactaga 47397289  T
Q  117 acacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggag 216  Q
    ||||||||||||  | ||| ||||   |   ||  |  | ||||| ||||||||||||||  ||||  || || |||||||| || ||| | ||||||||    
T  47397288 acacaatcttccagttattcaaaa---gaaagtgagaaacttcaaaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggag 47397192  T
Q  217 ttaggagtgattttacctttctc 239  Q
    |||||||||||||||||||||||    
T  47397191 ttaggagtgattttacctttctc 47397169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 45883814 - 45883593
Alignment:
Q  18 agatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaa 117  Q
    |||| |||||| ||||||||||||  ||||||||||| ||||||||||||  |||||| | ||||| |||||| |||||||||||| |   |||||| |     
T  45883814 agataagcgtcgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaatctacattactacac 45883715  T
Q  118 cacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagt 217  Q
    |||||      | |||||  ||| ||    |||||||| ||||  ||||||||||||||| |||| |||||| |||||||| |||||| | |||||||||    
T  45883714 cacaaaagctttgtcattctaaa-gtcaaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagt 45883616  T
Q  218 taggagtgattttacctttctct 240  Q
    |||||||| ||| ||||||||||    
T  45883615 taggagtggtttcacctttctct 45883593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 46479819 - 46480056
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||| ||||| ||||||||||| | |||||  ||||||||||| |||||||||||| | || || | ||||| || ||| |||||||||    
T  46479819 ccttataagcaaggcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctg 46479918  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    ||| |||| ||||  ||||||| |||||     ||   |||||||  |||||||| || | ||||||||  ||||||||||| |||||  |||||||| |    
T  46479919 aatctgagctactgcaacacaagcttcc---atttggtaaagtggaagtaggtgactttaggattccaaagttcaatatttcatttggacttgaaacttc 46480015  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctctg 241  Q
    | ||| | | |||||| |||| ||| |||||||||||||||    
T  46480016 tgatatgctaaaggagctaggtgtggttttacctttctctg 46480056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 45902999 - 45903109
Alignment:
Q  17 aagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactaga 116  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||||   ||  ||  || ||||||||| | |||||||||| |||||||||| |    
T  45902999 aagataagcgtcaattctctatgtatatttttcttccaaaagcaaaagatggtttgcaaagtttagttgagaaggtagcttctgaatctgagttactaca 45903098  T
Q  117 acacaatcttc 127  Q
     ||||| ||||    
T  45903099 ccacaagcttc 45903109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 47414261 - 47414163
Alignment:
Q  29 aattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttc 127  Q
    ||||||||||||| |||||||||||| |  ||| |||||  |||||| | |||||||||||| |||||||||||| |||||||||| | ||||| ||||    
T  47414261 aattctctatgtacatttttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttc 47414163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 5156284 - 5156369
Alignment:
Q  11 aaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggct 96  Q
    ||||||||||| |||||| |||||||||||| |||||||||||| |||| |||||||  ||| || | |||||||||||| |||||    
T  5156284 aaggcaaagataagcgtcgattctctatgtacatttttcttccaaatgctaaagatggactgccagcattggttgagaagttggct 5156369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46526521 - 46526285
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||  ||||| ||||||||||||||||||| ||||||||||||   |||| |||||   || |||| ||  | |||||| | |||||||    
T  46526521 ccttataagcaaggagaagataagcgtcaattctctatgtacatttttcttccaagagcaagagatggtttgccaactttaatcgagaaggtagcttctg 46526422  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    ||  |||||||||| | ||||| |||||| ||   | |||||| |  |||||||| ||||  ||||||| ||||||  |||| |||| | |||| ||| |    
T  46526421 aacctgagttactacaccacaaccttcctttc---acaaaagttgaagtaggtgatttcagaattccaaaattcaaattttcatttgagcttgacacttc 46526325  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctct 240  Q
    | | | | |||| ||||||| |||||||||||||||||||    
T  46526324 tcaaatgttgaaagagttagaagtgattttacctttctct 46526285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 46539170 - 46539262
Alignment:
Q  148 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctct 240  Q
    |||||||| ||||  |||||||||||||| ||||| |||| | |||||||| |||||| | | |||||| ||||| || ||||||||||||||    
T  46539170 gtaggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctct 46539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 46554122 - 46554044
Alignment:
Q  162 gattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctct 240  Q
    ||||||||| ||| | ||||| |||||| |||||  | |||||| | |||||||||| |||||||||||||||||||||    
T  46554122 gattccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctct 46554044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 51943935 - 51943985
Alignment:
Q  17 aagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatg 67  Q
    ||||| |||| ||||||||||||||| ||||||||||| ||||||||||||    
T  51943935 aagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatg 51943985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46531948 - 46532014
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatg 67  Q
    |||||||| |||||||| |||   |||||||||||||||||  |||||||||| |||||| ||||||    
T  46531948 ccttataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcccgatgcacaagatg 46532014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 46554263 - 46554173
Alignment:
Q  18 agatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgag 108  Q
    |||||| ||||| |||||||||||  |||| ||||| ||||||||||||| | ||||| | ||| |||||||  ||||||| |||| ||||    
T  46554263 agatgaccgtcatttctctatgtactttttacttcccgatgcaaaagatgggttgtcagctttgattgagaaagtggcttcggaatatgag 46554173  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 16025657 - 16025749
Alignment:
Q  148 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctct 240  Q
    |||||||| ||||  |||||||| |||||  |||| |||||| |||||||| || ||| | |||||||| | |||||  ||||||||||||||    
T  16025657 gtaggtgatttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctct 16025749  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9692814 - 9692578
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    ||||||||| |||| ||| || |||| |||||||||||||| |||||||||||| ||||||||||||  || | | |  ||||||||||  |||||||||    
T  9692814 ccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatgcaaaagatgtactattagctatggttgagaaagtggcttctg 9692715  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    |||||||||| ||||| ||||| ||||||     ||||  ||||    ||||||| ||| | ||||||||||||||  |||| |||||| |||||||| |    
T  9692714 aatttgagttcctagagcacaagcttcctta---taaactagtgagaataggtgaattccaaattccaagattcaaattttcatttgggcttgaaacttc 9692618  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctct 240  Q
    |  || || ||||||||||||||||| |||||||||||||    
T  9692617 tcgtatgacgaaggagttaggagtgagtttacctttctct 9692578  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 9675775 - 9675556
Alignment:
Q  18 agatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaa 117  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||| ||  || ||  |  ||||||| ||| ||||||||||||||||||| |||||     
T  9675775 agataagcgacaattctctatgtacatttttcttccaaatgcaaaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagag 9675676  T
Q  118 cacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagt 217  Q
    | ||| ||||||     ||||  ||||   |||||| | ||| | ||||||||||||||  |||| |||||| |||||||| ||   | ||||||||||     
T  9675675 cccaagcttcctta---taaacgagtgaaagtaggtaatttccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagc 9675579  T
Q  218 taggagtgattttacctttctct 240  Q
    |||||||||||||||||||||||    
T  9675578 taggagtgattttacctttctct 9675556  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 35155450 - 35155575
Alignment:
Q  4 tataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaat 103  Q
    ||||| ||||| |||||||||||  ||||||||||||| |||||||||||| ||||||||||||  || ||| | |||||||||||| ||||||||||||    
T  35155450 tataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggactatcagctttggttgagaaggtggcttctgaat 35155549  T
Q  104 ttgagttactagaacacaatcttcct 129  Q
    ||||||| ||||| ||||| ||||||    
T  35155550 ttgagttgctagagcacaagcttcct 35155575  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35162468 - 35162703
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| ||||| |||||||||||  ||||||||||||| ||||| |||||| ||||||||||||  |||||| | |||||||||||| |||||||||    
T  35162468 ccttataagcaaggaaaagatgagcggaaattctctatgtacatttt-cttccaaatgcaaaagatggcctgtcagctttggttgagaaggtggcttctg 35162566  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactac 200  Q
    | |||||| | |||||  |||  ||||||     ||| | |||| | |||||||  ||||| ||||||| ||||||  |||| | |||| |||||||| |    
T  35162567 attttgagctcctagagaacatgcttcct---tgtaatagagtgccagtaggtggcttcaaaattccaaaattcaaattttcatatgggcttgaaacttc 35162663  T
Q  201 taatacgatgaaggagttaggagtgattttacctttctct 240  Q
    |  |  | |||||||  |||||||||||||||||||||||    
T  35162664 tcgtgtgctgaaggatctaggagtgattttacctttctct 35162703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 15556043 - 15556154
Alignment:
Q  3 ttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaa 102  Q
    |||||| |||||| || |||| || | ||||||||| ||  || |||||||||||||||||||||  || ||  | |||||||| ||| ||||||| |||    
T  15556043 ttataaacaaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaa 15556142  T
Q  103 tttgagttacta 114  Q
    | ||||||||||    
T  15556143 tctgagttacta 15556154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 15556200 - 15556277
Alignment:
Q  163 attccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttctct 240  Q
    |||||||  |||||||| || |||||| |||||||| || ||| | |||||||  |||||||| ||||||||||||||    
T  15556200 attccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctct 15556277  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 20144802 - 20144892
Alignment:
Q  148 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttct 238  Q
    |||||||| || || ||||||||||||||| |||| |||||| ||||||||| | ||||  | ||||||||||||||| ||||||| ||||    
T  20144802 gtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccattct 20144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 20359312 - 20359402
Alignment:
Q  148 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttct 238  Q
    |||||||| || || ||||||||||||||| |||| |||||| ||||||||| | ||||  | |||||||||||||||| |||||| ||||    
T  20359312 gtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattct 20359402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 20168972 - 20168882
Alignment:
Q  148 gtaggtgagttcaagattccaagattcaatatttcgtttgggattgaaactactaatacgatgaaggagttaggagtgattttacctttct 238  Q
    |||||||| || || ||||| ||||||||| |||| |||||| ||||||||| | ||||  | |||| |||||||||||||||||| ||||    
T  20168972 gtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccattct 20168882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 20359179 - 20359269
Alignment:
Q  24 gcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttacta 114  Q
    ||||||||||||||||||||||||| | ||| | ||||||||||  ||| || | || ||||||||| || ||||| ||| ||| ||||||    
T  20359179 gcgtcaattctctatgtatatttttttgccaaacgcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaattacta 20359269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 16722179 - 16722370
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||||||||||| |||  ||||||||| ||  |||||||||| ||   |||||||| | ||||||  ||| |||| ||  | |||||||    
T  16722179 ccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctg 16722278  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    | | ||||||  | ||||  ||||||||||    || ||||||||  |||||  |||||| ||||||||||||||||||||| |||| |||||||    
T  16722279 attctgagtttttggaacggaatcttcctcg---tagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaa 16722370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17699193 - 17699384
Alignment:
Q  1 ccttataatcaaggcaaagatgagcgtcaattctctatgtatatttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctg 100  Q
    |||||||| |||||||||||||| |||  ||||||||| ||  |||||||||| ||   |||||||| | ||||||  ||| |||| ||  | |||||||    
T  17699193 ccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgacaaaaaagatgggttgtcaaatttgattgataaagtagcttctg 17699292  T
Q  101 aatttgagttactagaacacaatcttcctctcattaaaaaagtggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    | | ||||||  | ||||  ||||||||||    || ||||||||  |||||  |||||| ||||||||||||||||||||| |||| |||||||    
T  17699293 attctgagtttttggaacggaatcttcctcg---tagaaaagtggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaa 17699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 17708345 - 17708493
Alignment:
Q  44 tttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagt 143  Q
    |||||||||| ||||||||||||| | ||||| | ||| |||| | | | |||||| | | ||||||  | ||||||||||||||||    || ||||||    
T  17708345 tttttcttcccgatgcaaaagatgggttgtcagctttgattgatacggtagcttctaattctgagtttttggaacacaatcttcctcg---tagaaaagt 17708441  T
Q  144 ggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    ||  |||||  |||||| ||||||||||||||||||||| |||  |||||||    
T  17708442 ggaagtaggcaagttcaggattccaagattcaatatttcttttaagattgaa 17708493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 17718169 - 17718317
Alignment:
Q  44 tttttcttccagatgcaaaagatgagctgtcaaccttggttgagaagctggcttctgaatttgagttactagaacacaatcttcctctcattaaaaaagt 143  Q
    |||||||||| ||||||||||||| | ||||  | ||| |||| ||  |  ||||||| | ||||||  | ||||||||||||||||    || ||||||    
T  17718169 tttttcttcccgatgcaaaagatgggttgtccgctttgattgataatgtaacttctgattatgagtttttggaacacaatcttcctcg---tagaaaagt 17718265  T
Q  144 ggcggtaggtgagttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    ||  |||||  |||||| ||||||||||||||||||||| |||| |||||||    
T  17718266 ggaagtaggcaagttcaggattccaagattcaatatttcttttgagattgaa 17718317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 17736107 - 17736147
Alignment:
Q  155 agttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  17736107 agttcatgattccaagattcaatatttcttttgagattgaa 17736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 17745287 - 17745327
Alignment:
Q  155 agttcaagattccaagattcaatatttcgtttgggattgaa 195  Q
    |||||| ||||||||||||||||||||| |||| |||||||    
T  17745287 agttcaggattccaagattcaatatttcttttgagattgaa 17745327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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