View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9951_low_28 (Length: 228)
Name: NF9951_low_28
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 32319710 - 32319488
Alignment:
| Q |
1 |
taggagtcgagttttcttgcctaagaagaaaacttcctgatgcttgtgcattaggttg---agtgtcggaaacattgttagaggcatatgatgatgaatc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
32319710 |
taggagtcgagttttcttgcctaagaagaaaacttcctgatgcttgtgcattaggttgttgagtgtcggaaacattgttagaggcgtctgatgatgaatc |
32319611 |
T |
|
| Q |
98 |
acccaaacaaagcaccaaacaatgttcattatcaagtcttgtggctgcctcttctagagatggtccaactacttgaggagtgatcctcggttttggaaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
32319610 |
gcccaaacaaagcaccaaacaatgttcattatcaagtcttgtggctgcctcttctagagatggtccaactacttgaggagtgatccttggttttggaata |
32319511 |
T |
|
| Q |
198 |
tctcgaatgataagttctgtgct |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32319510 |
tctcgaatgataagttctgtgct |
32319488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 32366575 - 32366371
Alignment:
| Q |
4 |
gagtcgagttttcttgcctaagaagaaaacttcctgatgcttgtgcattaggttgagtgtcggaaacattgttagaggcatatgatgatgaatcacccaa |
103 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
32366575 |
gagtcaagttttcttgtgtaggaagaaaacttcctgatgcttgtgcattaggttgagtgtcggaaacattgttagaggcgtatgatgatgaatcgcccaa |
32366476 |
T |
|
| Q |
104 |
acaaagcaccaaacaatgttcattatcaagtcttgtggctgcctcttctagagatggtccaactacttgaggagtgatcctcggttttggaacatctcga |
203 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| |||||||||| ||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32366475 |
acaaagtatcaaacattgttcattatcaagttttgtggctgcttctgctagagatcgtccaagtacttgaggagtgatcctcgattttggaacatctcga |
32366376 |
T |
|
| Q |
204 |
atgat |
208 |
Q |
| |
|
||||| |
|
|
| T |
32366375 |
atgat |
32366371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 32311670 - 32311856
Alignment:
| Q |
2 |
aggagtcgagttttcttgcctaagaagaaaacttcctgatgcttgtgcattaggttgagtgtcggaaacattgttag----aggcatatgatgatgaatc |
97 |
Q |
| |
|
||||||||||||| |||||||| ||||||| | || |||||| |||| |||||||| | ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
32311670 |
aggagtcgagtttccttgcctaggaagaaaccctcttgatgcatgtggattaggttcaatgtcggaaacattgttaattataggcctatgatgatgaatc |
32311769 |
T |
|
| Q |
98 |
acccaaacaaagcaccaaacaatgttcattatcaagtcttgtggctgcctcttctagagatggtccaactacttgaggagtgatcct |
184 |
Q |
| |
|
|| |||||||| | ||||| |||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
32311770 |
gccgaaacaaagtataaaacattgttcattattaagtcttgttgctgcctctgctagagatggtccaacaacttgaggagtgatcct |
32311856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University