View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9951_low_3 (Length: 492)

Name: NF9951_low_3
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9951_low_3
NF9951_low_3
[»] chr1 (12 HSPs)
chr1 (1-476)||(1793170-1793645)
chr1 (10-294)||(2012606-2012889)
chr1 (11-261)||(2007155-2007408)
chr1 (14-267)||(2011135-2011388)
chr1 (4-243)||(2020414-2020651)
chr1 (10-195)||(4334120-4334305)
chr1 (10-195)||(3379479-3379664)
chr1 (3-195)||(3362468-3362660)
chr1 (27-119)||(3373532-3373624)
chr1 (90-193)||(3342004-3342107)
chr1 (143-280)||(4322365-4322503)
chr1 (27-119)||(6600959-6601051)
[»] chr2 (3 HSPs)
chr2 (10-251)||(20935126-20935367)
chr2 (52-243)||(20924133-20924324)
chr2 (10-226)||(20953689-20953905)
[»] chr4 (1 HSPs)
chr4 (53-210)||(21238216-21238373)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 1793645 - 1793170
Alignment:
Q  1 aacaaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttc 100  Q
    |||||||| ||||||||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1793645 aacaaagtcaagccaaactaaatgagcactcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttc 1793546  T
Q  101 aagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793545 aagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa 1793446  T
Q  201 aagaaaaattgctataaatcagaatatgatgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagggaatta 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1793445 aagaaaaattgctataaatcagaatataatgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagggaattg 1793346  T
Q  301 gaggtgtgggaaactaaacaatattagggttgtcaattcaagcattatacctttagaaaatagtcgtcaatatccaagtattttacttgatgtagatgag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793345 gaggtgtgggaaactaaacaatattagggttgtcaattcaagcattatacctttagaaaatagtcgtcaatatccaagtattttacttgatgtagatgag 1793246  T
Q  401 cnnnnnnnttaagcaagttgttggagcttccatgcaagttgtttgaatacaaatttaaatcaacgtatgcaaattt 476  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793245 caaaaaaattaagcaagttgttggagcttccatgcaagttgtttgaatacaaatttaaatcaacgtatgcaaattt 1793170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 2012889 - 2012606
Alignment:
Q  10 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 109  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | |    
T  2012889 aagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtcgtag 2012790  T
Q  110 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactga---agtagaaaagaaa 206  Q
    |||||||| |||||||||||||| |||| ||| |||||||||||||||||| ||  ||||||||||||||||| ||||||||||    ||| ||||||||    
T  2012789 aagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactgatattgtacaaaagaaa 2012690  T
Q  207 aattgctataaatcagaatatgatgtttataatacttgcagatcaagagttgcatactcattattgtagttcatttcaaattggtagg 294  Q
    |||||||  |||||||||||  ||||||  |||||||    ||||||||||||||| |||| |  || |||||||| ||||| |||||    
T  2012689 aattgctccaaatcagaatacaatgtttcaaatactt----atcaagagttgcatattcatgaaagtggttcattttaaatttgtagg 2012606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 2007408 - 2007155
Alignment:
Q  11 agccaaactaaatgatta---ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcat 107  Q
    ||||||||||||||| ||   ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||    
T  2007408 agccaaactaaatgagtagtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcat 2007309  T
Q  108 tgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaa 207  Q
     ||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||| |||||||||  ||||||||| ||| || | ||||    
T  2007308 agaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgtacaacataaaa 2007209  T
Q  208 attgctataaatcagaatatgatgtttataatacttgcagatcaagagttgcat 261  Q
    ||| || ||||||||||||| ||||||  |||||||||||||||||||||||||    
T  2007208 atttctctaaatcagaatataatgttttaaatacttgcagatcaagagttgcat 2007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 2011388 - 2011135
Alignment:
Q  14 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagt 113  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  2011388 caaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatttccttcaactcattgaagt 2011289  T
Q  114 ttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgct 213  Q
    |||| |||||||| ||| |  ||| ||| |||||||||||||||||| ||  ||||||||||||||||| |||||||||| ||| ||  ||||| |||||    
T  2011288 ttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgatgtacaacggaaaatttgct 2011189  T
Q  214 ataaatcagaatatgatgtttataatacttgcagatcaagagttgcatactcat 267  Q
     | ||||||||||| ||||||  |||||||  ||||||||||||||||| ||||    
T  2011188 ctgaatcagaatataatgtttcaaatactttgagatcaagagttgcatattcat 2011135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 2020651 - 2020414
Alignment:
Q  4 aaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaag 103  Q
    ||||| ||| |||| ||||||| ||||||| | ||| | ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||    
T  2020651 aaagtcaagtcaaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaag 2020552  T
Q  104 tcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaag 203  Q
    |||| ||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||||||||||||| |||||| |   ||| || ||    
T  2020551 tcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaatatt---gtacaacag 2020455  T
Q  204 aaaaattgct-ataaatcagaatatgatgtttataatactt 243  Q
    ||||||||||  || |||||||||| ||||||  |||||||    
T  2020454 aaaaattgctcttagatcagaatataatgttttaaatactt 2020414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 4334120 - 4334305
Alignment:
Q  10 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 109  Q
    |||| |||||||| || |||||||  |||| |||| || || ||| ||||| |||||||| |||||||| ||||| || |||||||||| || || || |    
T  4334120 aagctaaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcg 4334219  T
Q  110 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 195  Q
    ||||||||| ||||  ||||| |  ||| ||| |||||||||||||||||| ||  ||||| |||||||||||  |||||||||||    
T  4334220 aagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaag 4334305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 3379664 - 3379479
Alignment:
Q  10 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 109  Q
    |||||||||||||| | ||||||| ||||| |  | || |||||| ||||| |||||||| | ||  || || ||||| ||||||||||||||| |||||    
T  3379664 aagccaaactaaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattg 3379565  T
Q  110 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 195  Q
    |||||||| | |||  |||||||  ||| || ||||||||||||||||||| ||  ||  ||| |||||||||  |||||||||||    
T  3379564 aagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactgaag 3379479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 3362660 - 3362468
Alignment:
Q  3 caaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaa 102  Q
    |||||| ||||||||||||| || ||||||| | ||| |  | || |  ||||||||| |||||| | | ||  || ||||||||  |||||| ||||||    
T  3362660 caaagtcaagccaaactaaacgagtactcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttcaa 3362561  T
Q  103 gtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 195  Q
    ||||| ||||| ||||| |||  |||||| | | | ||||||||||||||| |||||| || ||||||||||||||||||  |||||||||||    
T  3362560 gtcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcagccaaatactgaag 3362468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 3373624 - 3373532
Alignment:
Q  27 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 119  Q
    ||||||| ||||| | || || |||||||||||| |||||||| | ||  || ||||||||||||||||||||||||||||||||||||||||    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgc 3373532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 3342107 - 3342004
Alignment:
Q  90 aaatttccttcaagtcattgaagtttatgctta-accaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaat 188  Q
    |||||| |||||||||||||||||||||||||| || ||| || | ||| |||||||||||||||||||||| ||  |||||||| ||||||||  ||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  189 actga 193  Q
    |||||    
T  3342008 actga 3342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 4322365 - 4322503
Alignment:
Q  143 atacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa-aagaaaaattgctataaatcagaatatgatgtttataatac 241  Q
    |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| |||| || || ||  | | ||||| ||||||| |||||| ||||||    
T  4322365 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaacaacaataaaggatttaaattagaatataatgtttttaatac 4322464  T
Q  242 ttgcagatcaagagttgcatactcattattgtagttcat 280  Q
     | | ||||| ||||||||||| ||| || || ||||||    
T  4322465 atacggatcaggagttgcatacacatgatcgttgttcat 4322503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 6600959 - 6601051
Alignment:
Q  27 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 119  Q
    ||||||||||||| |  ||||||   |||||||| |||||||| || |  || ||||||||||||||||||||  | |||| |||||||||||    
T  6600959 tactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatgc 6601051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 20935367 - 20935126
Alignment:
Q  10 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 109  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||||||||||| |    
T  20935367 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcg 20935268  T
Q  110 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 209  Q
    ||||||||||| ||  ||||||   ||| ||  |||||||||||||||||| || |||||| |||||||||||  | |||||||||   || ||||||||    
T  20935267 aagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactgaagcgaaacagaaaaat 20935168  T
Q  210 tgctataaatcagaatatgatgtttataatacttgcagatca 251  Q
     ||  ||| ||||||||| | |||| |||||| | |||||||    
T  20935167 ggcattaattcagaatattaagtttttaatacatacagatca 20935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 20924324 - 20924133
Alignment:
Q  52 aagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggt 151  Q
    |||||||||||||||| | | ||  || ||| |||| ||||||||| ||||||| |||||||||| || ||   ||||| |||||| ||| |||||| ||    
T  20924324 aagattaggcgagcttttgagcaagcaaagaacagccgaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagt 20924225  T
Q  152 gtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgctataaatcagaatatgatgtttataatactt 243  Q
    ||||||||| ||  |||||| ||||||||||  ||||||||||| | || |||| | |  || ||||||||||||| |||||| ||||||||    
T  20924224 gtaggaagctttactggcaccacacctgcagccaaatactgaagcaaaacagaagagtgactctaaatcagaatataatgtttctaatactt 20924133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 20953905 - 20953689
Alignment:
Q  10 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 109  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||| | ||  | |    
T  20953905 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtcg 20953806  T
Q  110 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 209  Q
    |||||||||| |||  |||||||  ||| ||  |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| | |  ||||||||    
T  20953805 aagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcacaccagaaaaat 20953706  T
Q  210 tgctataaatcagaata 226  Q
      || ||||||||||||    
T  20953705 gactctaaatcagaata 20953689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 21238373 - 21238216
Alignment:
Q  53 agattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtg 152  Q
    |||||||| |||||||| | ||  || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||   ||| ||  ||||||||||    
T  21238373 agattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagatggcttagatgaatacaaggtg 21238274  T
Q  153 taggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaatt 210  Q
    |||||||| ||  ||| || ||||||||||  ||||||||||| |||| |||| ||||    
T  21238273 taggaagctttactggaacgacacctgcagccaaatactgaagcagaacagaagaatt 21238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University