View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_4 (Length: 486)
Name: NF9951_low_4
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 48594154 - 48593694
Alignment:
| Q |
11 |
gtggtagtgtattagaggagagaggatagagtgtccactaatatttttgactttaagtgtcattgattgtgtgtgttgtggatggtccccaaccgtagtg |
110 |
Q |
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| T |
48594154 |
gtggtagtgtattagaggagagaggatagagtgtccactgatatttttgacttttagtgtcattgattgtgtgtgttgtggatggtccccaaccgtagtg |
48594055 |
T |
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| Q |
111 |
aaatgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaatcaccctgcattgcaggcgatatcctgttactgcttctctctacataatacaa |
210 |
Q |
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| T |
48594054 |
aaatgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaattaccctgcattgcaggcgatatcctgttacagcttctctctacataatacaa |
48593955 |
T |
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| Q |
211 |
catttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctaat |
310 |
Q |
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| T |
48593954 |
catttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctagt |
48593855 |
T |
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| Q |
311 |
atcacataatataactccgtacctccgttgacatttatagagacccttatacttgg------tattctttcaagaaagctataatttcttgttcttatac |
404 |
Q |
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| T |
48593854 |
atcacataatataactccgtacctccgttgacatttatagagacccttatacttggtttgcatattctttcaagaaacctataatttcttgttcttatac |
48593755 |
T |
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| Q |
405 |
cttgttattacattaataaagtaaggaatttccttatatttactgtttatgcctttagttt |
465 |
Q |
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| T |
48593754 |
cttgttattacattaataaagtaaggaatttccttatatttacggtttatgcctttagttt |
48593694 |
T |
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