View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_5 (Length: 485)
Name: NF9951_low_5
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 118 - 470
Target Start/End: Original strand, 1793663 - 1794016
Alignment:
| Q |
118 |
tttttcagttctagaatttgcaaactttgtctgccttaaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaactt |
217 |
Q |
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| T |
1793663 |
tttttcagttctagaatttgcaaactttgtctggcttaaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaactt |
1793762 |
T |
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| Q |
218 |
gtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttat |
317 |
Q |
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| T |
1793763 |
gtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagtccttt-aatgagagactcatgtaccttctttttcatcttttat |
1793861 |
T |
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| Q |
318 |
caatcaatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggcaggaca--tggagtagtct |
415 |
Q |
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| T |
1793862 |
caatcaatatactttttatctgtcctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggcacgacatgtgaagtagtct |
1793961 |
T |
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| Q |
416 |
gtcgagttttaatatgctctatgtctctcttatgcatactatctttccgcctttg |
470 |
Q |
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| T |
1793962 |
gtcgagttttaatatgctctatgtctctcttatgcatactatctttcctcctttg |
1794016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 2007511 - 2007587
Alignment:
| Q |
156 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
232 |
Q |
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| T |
2007511 |
aagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac |
2007587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
| Q |
258 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
326 |
Q |
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| T |
2007641 |
atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 2020712 - 2020788
Alignment:
| Q |
156 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
232 |
Q |
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| T |
2020712 |
aagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttac |
2020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 2012992 - 2013074
Alignment:
| Q |
153 |
ttaaagtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa |
234 |
Q |
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| T |
2012992 |
ttaaagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa |
2013074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
323 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
399 |
Q |
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| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 1877116 - 1877223
Alignment:
| Q |
16 |
gatttgattgtgtttggtgcatgcccaggttatagagaggtggaggatggtttattttgttggtagctcgaaggtggattgctagtttcatttggtataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1877116 |
gatttgattgtgtttggtgcatgcccaggttatagagaggtggaggatggtttattttgttggtagctcgaaggtggattgctagtttcatttggtatca |
1877215 |
T |
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| Q |
116 |
tatttttc |
123 |
Q |
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|||||||| |
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| T |
1877216 |
tatttttc |
1877223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
| Q |
419 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
463 |
Q |
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| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttcc |
20954255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
| Q |
419 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
463 |
Q |
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| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcc |
20936014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
| Q |
419 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
463 |
Q |
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| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcc |
39275156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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