View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9951_low_7 (Length: 431)

Name: NF9951_low_7
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9951_low_7
NF9951_low_7
[»] chr6 (7 HSPs)
chr6 (1-234)||(17159600-17159833)
chr6 (110-234)||(17163630-17163754)
chr6 (66-233)||(21417089-21417254)
chr6 (144-239)||(7888223-7888319)
chr6 (36-98)||(7888148-7888210)
chr6 (142-224)||(17096337-17096418)
chr6 (142-224)||(17895786-17895868)
[»] chr2 (3 HSPs)
chr2 (26-234)||(29767943-29768151)
chr2 (51-226)||(26440385-26440559)
chr2 (145-230)||(27403696-27403781)
[»] chr4 (5 HSPs)
chr4 (46-224)||(45976135-45976313)
chr4 (36-234)||(33334182-33334366)
chr4 (142-224)||(10317126-10317207)
chr4 (142-224)||(53722020-53722101)
chr4 (147-224)||(43683731-43683807)
[»] chr8 (5 HSPs)
chr8 (46-224)||(41949815-41949992)
chr8 (46-155)||(41945408-41945517)
chr8 (142-224)||(33071931-33072012)
chr8 (142-224)||(42234757-42234838)
chr8 (142-224)||(28644575-28644656)
[»] chr5 (4 HSPs)
chr5 (45-155)||(33823955-33824068)
chr5 (130-217)||(43384972-43385058)
chr5 (142-224)||(30695306-30695387)
chr5 (84-116)||(34224379-34224411)
[»] chr3 (2 HSPs)
chr3 (10-234)||(53352915-53353129)
chr3 (142-171)||(755895-755924)
[»] chr7 (4 HSPs)
chr7 (160-230)||(2962637-2962706)
chr7 (142-231)||(13828165-13828254)
chr7 (146-224)||(8674977-8675054)
chr7 (142-224)||(47419641-47419722)
[»] chr1 (2 HSPs)
chr1 (144-224)||(43591886-43591965)
chr1 (142-224)||(16588541-16588622)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17159833 - 17159600
Alignment:
Q  1 aatgaattaaggaatgtaaaatgtctattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagt 100  Q
    |||||||| ||||||||||||||| |||||| | | ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  17159833 aatgaattgaggaatgtaaaatgtatattgattgtaatgaaaatttgtacaaggaatgagcttatatacgagcaagtgttatgttacttgaagcacaagt 17159734  T
Q  101 aagcaacaactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgat 200  Q
    ||| ||||||||| ||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||    
T  17159733 aagtaacaactctgactcttatttcctaaaatttctaaccaacttgtaacaaacgtcaaaacaaactaaaacaaagtatgatcaatcaactaatcatgat 17159634  T
Q  201 taccactaatctaaacttgaattatcaactaaac 234  Q
    || |||||||||||||||||||||||||||||||    
T  17159633 tatcactaatctaaacttgaattatcaactaaac 17159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 17163754 - 17163630
Alignment:
Q  110 ctctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaa 209  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| | ||||||    
T  17163754 ctctaactcttatttcctaaaacttctaaccaacttgtaacaaacttcaaaacaaactaaaacaaagtgtgatcaatcaactaatcacgatcatcactaa 17163655  T
Q  210 tctaaacttgaattatcaactaaac 234  Q
    |||||||||||||||||||||||||    
T  17163654 tctaaacttgaattatcaactaaac 17163630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 21417089 - 21417254
Alignment:
Q  66 atacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaa 165  Q
    |||||| | |||| |||||||||||||||||||||||| |||| || |||| |||||||| |||| ||| ||||  ||||||||||||||||||||| ||    
T  21417089 atacaaactagtgctatgttacttgaagcacaagtaagtaacagctataacccttatttcttaaagcttgtaaccaacttgtaacaaacttcaaaac-aa 21417187  T
Q  166 ctaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaa 233  Q
    |||||| |||||||||||||||| ||||| |||||||  ||||| || ||||||||||||||||||||    
T  21417188 ctaaaacaaagtgtaatcaatcagctaattatgattaatactaaact-aacttgaattatcaactaaa 21417254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 7888223 - 7888319
Alignment:
Q  144 ttgtaacaaacttcaaaacaaactaaaat-aaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaacaaaga 239  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  7888223 ttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaaga 7888319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 7888148 - 7888210
Alignment:
Q  36 tatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaa 98  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  7888148 tatgaaaaattgtacaaggaatgagcttatatacaagcatgtgttaggttacttgaagcacaa 7888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 17096337 - 17096418
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  17096337 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 17096418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 17895786 - 17895868
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccact-aatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||||||| ||| || |||| ||| ||  |||||| |||| || ||||||||||||||    
T  17895786 acttgtaacaaacttcagaacaaactaaaataaaatgtgattaatc-actgattgtgattatcactaaaactaaacttgaatta 17895868  T

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Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 29768151 - 29767943
Alignment:
Q  26 tattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttc 125  Q
    |||||| ||| | ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29768151 tattgattctaaggaaaatttgtacaaggaatgagcttatatacaagcaattgttatgttacttgaagcacaagtaagtaacaactctaactcttatttc 29768052  T
Q  126 ctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattat 225  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||| |||||| |||||||||||||||    
T  29768051 ctaaaacttataaccaacttgtaacaaactttaaaacaaactaaaacaaagtgtgatcaatcaattaatcatgattatcactaaactaaacttgaattat 29767952  T
Q  226 caactaaac 234  Q
    |||||||||    
T  29767951 caactaaac 29767943  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 51 - 226
Target Start/End: Complemental strand, 26440559 - 26440385
Alignment:
Q  51 aaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttacttgtaac 150  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||  ||||| ||||||||  |||||||||    
T  26440559 aaggaatgagcttatatacaagcaagtgttatgttacttgaagcacaagtaagtaactactttagctcttattcgctaaagcttctaaccaacttgtaac 26440460  T
Q  151 aaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatc 226  Q
     ||||| |||||||||||||||||| ||| ||||||||| ||||||||||||  ||||| ||||| ||||||||||    
T  26440459 -aactttaaaacaaactaaaataaaatgtgatcaatcaaataatcatgattattactaaactaaatttgaattatc 26440385  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 27403696 - 27403781
Alignment:
Q  145 tgtaacaaacttcaaaacaaactaaaataaagtgtaatcaat-caactaatcatgattaccactaatctaaacttgaattatcaact 230  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| || |||||||||||||||||    
T  27403696 tgtaacaaacttcaaaacaaactaaaacaaagtgtaatcaatccagctaatcatgattaacactaaact-aacttgaattatcaact 27403781  T

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Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 45976135 - 45976313
Alignment:
Q  46 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaa-gcaacaactctaactcttatttcctaaaacttctaacttact 144  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| |||||||| ||||   |||    
T  45976135 tgtacaaggaatgagcttatatacaagcaagtgttaggttacttgaagcacaagtaaagtaacaaccctaactcttattttctaaaact-ctaaaaaact 45976233  T
Q  145 tgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||||||||||||| ||  ||| || |||||||||| |||||||||||||||| |||||||||||||    
T  45976234 tgtaacaaacttcaaaacaaactaaaacaagatgtgattaatcaactaagcatgattaccactaatgtaaacttgaatta 45976313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 33334182 - 33334366
Alignment:
Q  36 tatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagt-aagcaacaactctaactcttatttcctaaaactt 134  Q
    |||||||| ||||||||||||||| |||| | ||||||| |||||| |||||||||||||||||| ||| |||||| ||||||||||||| |||||   |    
T  33334182 tatgaaaa-ttgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaagtaacaaccctaactcttattttctaaa--ct 33334277  T
Q  135 ctaacttacttgtaacaaacttcaaaacaaactaaaat-aaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaa 233  Q
    |||||  ||||||            ||||||||||||| ||||||| || |||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  33334278 ctaaccaacttgt------------aacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaa 33334365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 10317126 - 10317207
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| ||||||||| || ||||||| || |||| ||| ||  ||||||  ||||| ||||||||||||||    
T  10317126 acttgtaacaaacttcataacaaactacaacaaagtgtgattaatc-actgattgtgattataactaaactaaacttgaatta 10317207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 53722101 - 53722020
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  53722101 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 53722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 43683731 - 43683807
Alignment:
Q  147 taacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    |||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| ||||||  |||||||||||||    
T  43683731 taacaaacttcataacaaactaaaacaaagtgtgattaatc-actgattgtgattatcactaaaataaacttgaatta 43683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 41949992 - 41949815
Alignment:
Q  46 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttactt 145  Q
    ||||||| ||||| | ||| |||||| | |||||||||| |||||||||||||||||| ||||||| |||| |||||||| |||||||| ||||  ||||    
T  41949992 tgtacaatgaatgggtttatatacaaactagtgttatgtcacttgaagcacaagtaagtaacaactataacccttatttcttaaaacttgtaaccaactt 41949893  T
Q  146 gtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    |||||||||||||||||||||||||| | ||||| || |||| ||| ||  |||||| |||||| |||| |||||||||    
T  41949892 gtaacaaacttcaaaacaaactaaaacagagtgtgattaatc-actgattgtgattatcactaaactaagcttgaatta 41949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 41945517 - 41945408
Alignment:
Q  46 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttactt 145  Q
    ||||||| ||||| | ||| |||||| | | ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||| ||||  ||||    
T  41945517 tgtacaatgaatgggtttatatacaaacgaatgttatgttactttaagcacaagtaagtaacaactataactcttatttcttaaaacttgtaaccaactt 41945418  T
Q  146 gtaacaaact 155  Q
    ||||||||||    
T  41945417 gtaacaaact 41945408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 33072012 - 33071931
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  33072012 acttgtaacaaacttcataacaaactaaaagaaagtgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 33071931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 42234757 - 42234838
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  42234757 acttgtaacaaacttcataacaaactaaaacaaagtgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 42234838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 28644656 - 28644575
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  28644656 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 28644575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 33824068 - 33823955
Alignment:
Q  45 ttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagt-aagcaacaa--ctctaactcttatttcctaaaacttctaactt 141  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||  || |||||||||||| ||||||||||||||      
T  33824068 ttgtacaaggaatgagcttatatacaagcaagtgttatgttacttgaagcagaagtaaagtaacaaccctataactcttattttctaaaacttctaacca 33823969  T
Q  142 acttgtaacaaact 155  Q
    ||||||||||||||    
T  33823968 acttgtaacaaact 33823955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 43385058 - 43384972
Alignment:
Q  130 aacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaact 217  Q
    ||||||||||  ||||||||||||||||| ||||||||||||  || ||| || || | |||||| ||||||| |||||| |||||||    
T  43385058 aacttctaacaaacttgtaacaaacttcataacaaactaaaagcaaatgtgattaa-ccactaattatgattatcactaaactaaact 43384972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 30695387 - 30695306
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  30695387 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 30695306  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 34224379 - 34224411
Alignment:
Q  84 ttacttgaagcacaagtaagcaacaactctaac 116  Q
    |||||||||||||||||||| ||||||||||||    
T  34224379 ttacttgaagcacaagtaagtaacaactctaac 34224411  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 53352915 - 53353129
Alignment:
Q  10 aggaatgtaaaatgtctattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttat---gttacttgaagcacaagtaagcaa 106  Q
    ||||||||||| ||| |||||| ||||||||||  ||||| || ||||| | ||| |||||| | ||||||||   ||||||||||||||||||||| ||    
T  53352915 aggaatgtaaattgtatattgaatcttatgaaat-ttgtataaagaatgggtttatatacaaactagtgttataatgttacttgaagcacaagtaagtaa 53353013  T
Q  107 caactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccac 206  Q
    ||||| |||| |||||| | ||||||||           ||||||||||| |||  ||||||||| ||| |||||||||||| ||||||||||||| |||    
T  53353014 caactataacccttattgcttaaaactt-----------gtaacaaactttaaattaaactaaaacaaaatgtaatcaatcatctaatcatgattaacac 53353102  T
Q  207 taatctaaacttgaattatcaactaaac 234  Q
    |||||| ||||||||||| |||||||||    
T  53353103 taatct-aacttgaattaccaactaaac 53353129  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 755924 - 755895
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaa 171  Q
    ||||||||||||||||||||||||||||||    
T  755924 acttgtaacaaacttcaaaacaaactaaaa 755895  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 2962637 - 2962706
Alignment:
Q  160 aacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaact 230  Q
    |||||||||||| ||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  2962637 aacaaactaaaacaaagtgtaatcaatcagttaatcatgattaacactaatct-aacttgaattatcaact 2962706  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 13828165 - 13828254
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaacta 231  Q
    ||||||||||||||||| ||||||| |||  ||| ||| || || ||||||| |||||||| ||||||  ||||||||||||| ||||||    
T  13828165 acttgtaacaaacttcagaacaaacaaaatgaaaatgtgattaaccaactaaacatgattatcactaaggtaaacttgaattaacaacta 13828254  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 8675054 - 8674977
Alignment:
Q  146 gtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||||||||||  | |||||| || || ||  ||| |||||||| |||||||||||||||||||||    
T  8675054 gtaacaaacttcaaaacaaactaac-tgaagtgtgattaaccatttaaacatgattatcactaatctaaacttgaatta 8674977  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 47419641 - 47419722
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  47419641 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 47419722  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 43591886 - 43591965
Alignment:
Q  144 ttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||| |||||||||||||||||||  || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  43591886 ttgtaacaaacttcataacaaactaaaataaagtgcgattaatc-actgattgtgattatcactaaactaaacttgaatta 43591965  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 16588541 - 16588622
Alignment:
Q  142 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 224  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  16588541 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccacttattgtgattatcactaaactaaacttgaatta 16588622  T

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