View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_low_9 (Length: 401)
Name: NF9951_low_9
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 3198893 - 3199265
Alignment:
| Q |
18 |
caaaatgtgtacctgattcaattctcatgcatattggtgacacaattgagatacttagcaatggaaagtacaaaagtatccttcatcgtggattggtgaa |
117 |
Q |
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| T |
3198893 |
caaaatgtgtacctgattcaattctcatgcatattggtgacacaattgagatacttagcaatggaaagtacaaaagtatccttcatcgtggattggtgaa |
3198992 |
T |
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| Q |
118 |
taaggaaaaagttagaatatcttgggcagtgttttgtgaaccacctaaggagaaaattattctgaagccacttcctgaacttgtaactgaaaaagaacca |
217 |
Q |
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| T |
3198993 |
taaggaaaaagttagaatatcttgggcagtgttttgtgaaccacctaaggagaaaattattctgaagccacttcctgaacttgtaactgaaaaagaacca |
3199092 |
T |
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| Q |
218 |
gcaaggtttccacctcgcacttttgctcagcatattcatcataaactttttaggaaggatgaggaggagaagaaagatgatcccaaaaaatgagtgcctc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3199093 |
gcaaggtttccacctcgcacttttgctcagcatattcatcacaaactttttaggaaggatgaggaggagaagaaagatgatcccaaaaaatgagtgcctc |
3199192 |
T |
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| Q |
318 |
attattcaatttctcttggaaaatttgcattttatacatttgtattgtgttatcttatcttatcttggcctatg |
391 |
Q |
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| T |
3199193 |
attattcaatttctc-tggaaaatttgcattttatacatttgtattgtgttatcttatcttatcctggcctatg |
3199265 |
T |
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