View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9952_low_1 (Length: 572)
Name: NF9952_low_1
Description: NF9952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9952_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 46550385 - 46549843
Alignment:
| Q |
1 |
gtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatta |
100 |
Q |
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| T |
46550385 |
gtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatga |
46550286 |
T |
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| Q |
101 |
tggctataaaggagacagcttccaaagtatctattgagtgtattgtttgtttctttctgcttccttttcttacgttgtttttggttcttatttgtatgca |
200 |
Q |
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| T |
46550285 |
tggctttaaaggagacagcttcc-aagtatctattgagtgtattgtttgtttctttctgcttccgtttcttacgttgtttttggttcttatttgt----a |
46550191 |
T |
|
| Q |
201 |
tgcatgcatgcatatccaatagaaaaatacgtgtcttgttttaataccctttatttatggctttatgattgcacaacgacgatggcagcttttgcagaat |
300 |
Q |
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| T |
46550190 |
tgcatgcatgcatatccaatagaaaaa-acgtgtcttgttttaatac----------tggctttatgattgcaccacgacgatggcagcttttgcagaat |
46550102 |
T |
|
| Q |
301 |
atatgaatg-tttttattgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatgg-nnnnnnnatg |
398 |
Q |
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| T |
46550101 |
atatgaatgttttttattgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggttttttttatg |
46550002 |
T |
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| Q |
399 |
attcgattcaaaactacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatttgaggcatgaatattcaccaccctccatagcaa |
498 |
Q |
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| T |
46550001 |
attcgattcaaaactacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatatgaggcatgaatatttaccacccaccatagcaa |
46549902 |
T |
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| Q |
499 |
aatatttattacctacttgctgtaacacataaacttcatcccttatgatctcaacttag |
557 |
Q |
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| T |
46549901 |
aatatttattacctacttgctgtaacacctaaacatcatcccttatgatctcaacttag |
46549843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46535263 - 46535147
Alignment:
| Q |
1 |
gtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatta |
100 |
Q |
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|||||||||| |||||||| || |||||||||||| | |||||||||||| | || ||||| |||||||||||||||||||| |||||| ||||| | |
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| T |
46535263 |
gtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttgttggagtttatga |
46535164 |
T |
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| Q |
101 |
tggctataaaggagaca |
117 |
Q |
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|||||| ||||| |||| |
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| T |
46535163 |
tggctacaaaggcgaca |
46535147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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