View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9952_low_2 (Length: 255)
Name: NF9952_low_2
Description: NF9952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9952_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 49244654 - 49244431
Alignment:
| Q |
8 |
ggagagtagggacagtggtagtgaggtgagtgaacatttgcttcaatttgttccttctttcacgttcaacatttagaacctcttcggttttagtagtagt |
107 |
Q |
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| T |
49244654 |
ggagagtagggacagtggtagtgaggtgagtgaacatttgcttcaatttgttccttctttcacgttcaacatttagaacctcttcggttttaatagtagt |
49244555 |
T |
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| Q |
108 |
ggcacgttttctgttactcatttcagaaagtgatttgttactgtactcttccatacgatacgagtctcacttttagttgg-ttatatatgaaagaaagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
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| T |
49244554 |
ggcacgttttctgttactcatttcagaaagtgatttgttactgtactcttccat-----acgagtctcactcttagttggtttatatatgaaagaaagag |
49244460 |
T |
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| Q |
207 |
agagaaaattgttagtgaggtttggggtt |
235 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49244459 |
agagaaaattgttagtgaggtttggggtt |
49244431 |
T |
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