View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9952_low_3 (Length: 245)
Name: NF9952_low_3
Description: NF9952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9952_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 26096560 - 26096346
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096560 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
26096461 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096460 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaact |
26096361 |
T |
|
| Q |
220 |
ttagcaagcacctat |
234 |
Q |
| |
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||||||||||||||| |
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| T |
26096360 |
ttagcaagcacctat |
26096346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 26084285 - 26084085
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
26084285 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttg |
26084186 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaact |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||| |
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| T |
26084185 |
ttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaact |
26084086 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
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| |
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| T |
26084085 |
t |
26084085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 26075686 - 26075493
Alignment:
| Q |
25 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaa |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26075686 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaa |
26075587 |
T |
|
| Q |
125 |
tattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaac |
218 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
26075586 |
tattatgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaac |
26075493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 26119847 - 26119650
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
26119847 |
ttcaagacagtgaggaacaatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttg |
26119748 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |
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| T |
26119747 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttg---ttatgtctaagctgttgttcaaaaact |
26119651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 26126504 - 26126304
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
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| T |
26126504 |
ttcaagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttg |
26126405 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaact |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||| |||||| ||| |
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| T |
26126404 |
ttgaatactatgttaatgggaaccaagatgctctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatact |
26126305 |
T |
|
| Q |
220 |
t |
220 |
Q |
| |
|
| |
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| T |
26126304 |
t |
26126304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 26064560 - 26064408
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||| |
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| T |
26064560 |
ttcaagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttg |
26064461 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggc |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
26064460 |
ttgaatattatgttaatgggaaccaagatgctctcaaacctttccctgatggc |
26064408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 26035912 - 26035770
Alignment:
| Q |
20 |
ttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||||||| ||| |
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| T |
26035912 |
ttcaagacagtgaggaacgatgctaacctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttg |
26035813 |
T |
|
| Q |
120 |
ttgaatattatgttaatgggaaccaagatgctctcaaaccttt |
162 |
Q |
| |
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| ||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
26035812 |
tcgaatattatgtcaatgggaaacaagatgctctcaaaccttt |
26035770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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