View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9953_low_1 (Length: 363)
Name: NF9953_low_1
Description: NF9953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9953_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26056409 - 26056606
Alignment:
| Q |
1 |
tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactg |
100 |
Q |
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| T |
26056409 |
tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactttgaaactg |
26056508 |
T |
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| Q |
101 |
aatttgattgaactactagcctctcaaac--attcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggag |
196 |
Q |
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| T |
26056509 |
aatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggag |
26056606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26085646 - 26085817
Alignment:
| Q |
1 |
tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactg |
100 |
Q |
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| T |
26085646 |
tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcgcagatattcagtacttcgactttgatactg |
26085745 |
T |
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| Q |
101 |
aatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag |
172 |
Q |
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| T |
26085746 |
aatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag |
26085817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 26112020 - 26112173
Alignment:
| Q |
33 |
taattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatactgaatttgattgaactactagcctctcaaacatt |
132 |
Q |
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| T |
26112020 |
taattaagaaatgaagaattgggtggtcagtttgagcacagatattca---------ctttgaaactgaatttgattgaactactagcctctcaaatatt |
26112110 |
T |
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| Q |
133 |
cttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttgga |
195 |
Q |
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| T |
26112111 |
cttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtgattttgga |
26112173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26049004 - 26049083
Alignment:
| Q |
1 |
tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca |
80 |
Q |
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| T |
26049004 |
tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26049083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26068071 - 26068150
Alignment:
| Q |
1 |
tggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca |
80 |
Q |
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| T |
26068071 |
tggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26068150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26128937 - 26129085
Alignment:
| Q |
1 |
tggttatatagggttgtgaagtttt--ggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgatac |
98 |
Q |
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| T |
26128937 |
tggttatatagggttctgaagcttataggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttctaaac |
26129036 |
T |
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| Q |
99 |
tgaatttgattgaactactagcctctcaaacattc-ttgatgggaatat |
146 |
Q |
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| | || |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
26129037 |
taagttcgattgaactaaaagcctctcaaatattctttgatgggaatat |
26129085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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