View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9953_low_3 (Length: 245)

Name: NF9953_low_3
Description: NF9953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9953_low_3
NF9953_low_3
[»] chr4 (26 HSPs)
chr4 (46-212)||(31307052-31307219)
chr4 (42-210)||(38766079-38766248)
chr4 (47-209)||(45994513-45994676)
chr4 (46-210)||(14854595-14854760)
chr4 (48-210)||(35972333-35972496)
chr4 (46-210)||(38844154-38844319)
chr4 (42-162)||(9012309-9012429)
chr4 (42-162)||(46016188-46016308)
chr4 (42-162)||(51626288-51626408)
chr4 (46-206)||(32005132-32005298)
chr4 (50-209)||(35334088-35334248)
chr4 (55-162)||(13948587-13948694)
chr4 (49-133)||(33529325-33529409)
chr4 (62-210)||(13686591-13686741)
chr4 (168-210)||(10199213-10199255)
chr4 (50-162)||(46250545-46250657)
chr4 (48-130)||(18841556-18841639)
chr4 (50-162)||(2434598-2434710)
chr4 (42-134)||(7096163-7096254)
chr4 (48-80)||(15133496-15133528)
chr4 (42-134)||(31308364-31308456)
chr4 (42-78)||(37241358-37241394)
chr4 (50-205)||(17135092-17135247)
chr4 (60-138)||(22017527-22017605)
chr4 (71-133)||(22189399-22189461)
chr4 (52-162)||(56447115-56447224)
[»] chr7 (24 HSPs)
chr7 (46-212)||(29059793-29059960)
chr7 (46-206)||(31492097-31492258)
chr7 (48-209)||(21747028-21747189)
chr7 (42-210)||(8839262-8839432)
chr7 (59-209)||(19477249-19477399)
chr7 (46-210)||(28537380-28537541)
chr7 (46-209)||(35707838-35708001)
chr7 (42-210)||(46373663-46373834)
chr7 (76-210)||(13254117-13254252)
chr7 (42-130)||(37339715-37339803)
chr7 (46-159)||(11486730-11486843)
chr7 (49-134)||(20207564-20207649)
chr7 (42-138)||(42741791-42741886)
chr7 (100-210)||(40099312-40099423)
chr7 (47-108)||(28665183-28665244)
chr7 (46-162)||(24172246-24172364)
chr7 (74-138)||(14545006-14545070)
chr7 (48-125)||(31776494-31776571)
chr7 (49-93)||(36821069-36821113)
chr7 (172-219)||(5905803-5905850)
chr7 (46-79)||(14552482-14552515)
chr7 (60-125)||(29428792-29428857)
chr7 (48-97)||(45778968-45779017)
chr7 (170-210)||(2657947-2657987)
[»] chr8 (16 HSPs)
chr8 (42-212)||(4125006-4125177)
chr8 (46-209)||(2743924-2744088)
chr8 (52-210)||(12958077-12958236)
chr8 (46-212)||(30935992-30936159)
chr8 (46-209)||(13468731-13468895)
chr8 (48-210)||(19715713-19715877)
chr8 (46-133)||(7839239-7839326)
chr8 (62-210)||(36994502-36994651)
chr8 (50-209)||(30055991-30056151)
chr8 (71-201)||(15682928-15683059)
chr8 (48-94)||(39086859-39086905)
chr8 (114-208)||(27121804-27121899)
chr8 (42-94)||(8521805-8521856)
chr8 (168-210)||(39086808-39086850)
chr8 (42-112)||(40320185-40320255)
chr8 (122-210)||(35206990-35207079)
[»] chr5 (14 HSPs)
chr5 (42-212)||(10591915-10592086)
chr5 (46-210)||(22187984-22188147)
chr5 (42-214)||(31113320-31113493)
chr5 (47-160)||(5123485-5123598)
chr5 (48-209)||(30784974-30785136)
chr5 (43-150)||(35774636-35774743)
chr5 (72-210)||(18909313-18909449)
chr5 (111-210)||(28023494-28023594)
chr5 (64-135)||(36212962-36213033)
chr5 (42-136)||(373746-373840)
chr5 (42-162)||(19329560-19329680)
chr5 (46-124)||(25983742-25983820)
chr5 (49-86)||(12682750-12682787)
chr5 (60-141)||(22402027-22402108)
[»] chr2 (26 HSPs)
chr2 (46-210)||(42745102-42745267)
chr2 (42-210)||(5394387-5394555)
chr2 (46-212)||(31579215-31579382)
chr2 (50-210)||(18105353-18105513)
chr2 (106-212)||(44732619-44732726)
chr2 (50-209)||(9438126-9438286)
chr2 (46-210)||(17981488-17981652)
chr2 (99-210)||(12133269-12133381)
chr2 (42-124)||(25423821-25423903)
chr2 (120-212)||(37568787-37568880)
chr2 (42-120)||(14551555-14551633)
chr2 (99-210)||(7157488-7157600)
chr2 (76-219)||(33756958-33757102)
chr2 (42-162)||(37179983-37180098)
chr2 (48-210)||(993744-993906)
chr2 (60-134)||(38743805-38743879)
chr2 (44-132)||(38372978-38373064)
chr2 (52-209)||(7020352-7020508)
chr2 (168-210)||(28365939-28365981)
chr2 (46-88)||(37092181-37092223)
chr2 (42-87)||(1682136-1682181)
chr2 (42-104)||(17655758-17655822)
chr2 (54-118)||(34386566-34386630)
chr2 (70-104)||(19252506-19252540)
chr2 (42-134)||(24412909-24413000)
chr2 (42-94)||(40688761-40688813)
[»] scaffold0182 (1 HSPs)
scaffold0182 (46-199)||(26332-26486)
[»] chr6 (17 HSPs)
chr6 (42-235)||(31412088-31412281)
chr6 (46-210)||(12411138-12411303)
chr6 (46-162)||(12836883-12836999)
chr6 (48-209)||(21910196-21910357)
chr6 (47-192)||(28099251-28099397)
chr6 (48-209)||(31107481-31107643)
chr6 (47-210)||(15614560-15614724)
chr6 (63-205)||(21028982-21029129)
chr6 (50-124)||(9536844-9536918)
chr6 (49-106)||(17177233-17177290)
chr6 (42-209)||(278383-278550)
chr6 (42-133)||(1534320-1534409)
chr6 (61-133)||(6062110-6062182)
chr6 (120-162)||(31868637-31868679)
chr6 (74-210)||(423645-423782)
chr6 (96-195)||(5944847-5944947)
chr6 (63-134)||(21028845-21028914)
[»] chr3 (21 HSPs)
chr3 (50-210)||(30995955-30996116)
chr3 (50-210)||(27763713-27763872)
chr3 (42-210)||(38331118-38331287)
chr3 (42-210)||(48204293-48204462)
chr3 (46-210)||(25224689-25224854)
chr3 (47-160)||(20861289-20861402)
chr3 (42-162)||(55123136-55123256)
chr3 (46-114)||(8757431-8757499)
chr3 (42-209)||(40294603-40294771)
chr3 (99-210)||(38088625-38088737)
chr3 (42-162)||(1642645-1642765)
chr3 (43-198)||(48210943-48211099)
chr3 (46-221)||(22288214-22288390)
chr3 (42-177)||(39950235-39950371)
chr3 (46-86)||(40318435-40318475)
chr3 (169-210)||(46604670-46604711)
chr3 (43-134)||(43621294-43621386)
chr3 (50-112)||(44941255-44941316)
chr3 (109-210)||(42514594-42514698)
chr3 (42-150)||(11767161-11767269)
chr3 (165-217)||(28967288-28967340)
[»] chr1 (24 HSPs)
chr1 (42-210)||(16756072-16756241)
chr1 (46-210)||(28724663-28724827)
chr1 (48-134)||(42297430-42297516)
chr1 (47-209)||(22022111-22022274)
chr1 (42-130)||(15642526-15642614)
chr1 (42-162)||(18428124-18428243)
chr1 (46-162)||(36806650-36806766)
chr1 (47-162)||(9780976-9781091)
chr1 (42-203)||(12035546-12035709)
chr1 (48-162)||(7242795-7242909)
chr1 (49-210)||(45806226-45806388)
chr1 (42-210)||(10750588-10750756)
chr1 (51-138)||(39547355-39547442)
chr1 (42-159)||(46864133-46864250)
chr1 (121-218)||(29124727-29124825)
chr1 (48-209)||(32534074-32534235)
chr1 (48-130)||(44913180-44913262)
chr1 (57-219)||(6607691-6607854)
chr1 (159-210)||(14500358-14500409)
chr1 (42-104)||(49071674-49071736)
chr1 (42-130)||(10367575-10367663)
chr1 (74-135)||(32883561-32883622)
chr1 (58-135)||(36086923-36087000)
chr1 (42-110)||(789805-789872)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-131)||(27212-27296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (42-104)||(29134-29196)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 31307052 - 31307219
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||| || |||    
T  31307052 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31307151  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
     |||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  31307152 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtg 31307219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 38766248 - 38766079
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||||| ||| ||    
T  38766248 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctg 38766149  T
Q  142 tatgtccaaagctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||| |||| |||||||||  ||||| ||||||||||||| || ||||||| ||||||||||||||||||    
T  38766148 catgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaag 38766079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 45994676 - 45994513
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    |||||||||  ||| ||||||||||||||||||| ||||||| |||||||| |||||| |||| |||||||| |||||||||||||||  ||||| |||     
T  45994676 gggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgc 45994577  T
Q  147 ccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    |||| |||||||||| | ||| ||||||||||||| || |||||||| ||||||||||||||||    
T  45994576 ccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaa 45994513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 14854760 - 14854595
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||  || |||||| ||||||| ||||| |||||||||||||||  || || |||    
T  14854760 cgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatg 14854661  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||| |||||||||| |||||  |||||||||||| || |||||| |||||||||||||||||||    
T  14854660 cccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaag 14854595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 35972496 - 35972333
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    |||||||||||| |||||||||||||||||||||||||| | | ||| || |||||| |||||||  |||| ||||| ||||||||| ||| |||||| |    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcc 35972397  T
Q  148 caaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||  |||||||||| ||||| ||||||||||||| || ||||| ||||||||||||||||||||    
T  35972396 catggctggattcgaacccaagaccttggttaagctagaagaggcccgttccatctcatctaag 35972333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 38844154 - 38844319
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||| ||||| ||| |  |||||||||| ||||||| ||||| |   ||||| |||||||| |||||||||||||||||||| |||||| |||    
T  38844154 cgggtatcctctgcgcgtaacagtagagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatg 38844253  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||||||||||||||| || |||||||||||||||| || ||||||| ||||||||||||| ||||    
T  38844254 cccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctcatttaag 38844319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 9012429 - 9012309
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||||||| ||||| ||||||||||| ||||||| ||    
T  9012429 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctg 9012330  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||| |||| ||| |||||||    
T  9012329 catgcccaaggctagattcga 9012309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 46016308 - 46016188
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||||| ||||||||| ||||||||||| | |||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||| ||    
T  46016308 aaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctg 46016209  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||| |||| |||||||||||    
T  46016208 catgcccaaggctggattcga 46016188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 51626288 - 51626408
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  |||| || |||||| | |||||| |||| ||||| ||||||||||||| ||    
T  51626288 aaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctg 51626387  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||| |||| |||||||||||    
T  51626388 catgcccaaggctggattcga 51626408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 32005132 - 32005298
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactg-----tt 140  Q
    ||||||||||||||||  || |||||||||||||| ||||||| || ||||||| ||||||||||||| |||| |||||||||||||||||||      |    
T  32005132 cgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgatgcaat 32005231  T
Q  141 gtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatc 206  Q
    | ||| ||||||||| ||||| || || ||| |||||||||||| ||||||||  ||||||||||||    
T  32005232 gcatgcccaaagctgaattcgaactcaggactttggttaagttagaagagacctattccatctcatc 32005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 35334088 - 35334248
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    |||||| | |||||||||||||||||||||||||||||  ||||| || |||||| |||||| | ||||  |||||||||||||| ||| || ||| |||    
T  35334088 tatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgccca 35334187  T
Q  150 aagctggattcgacccatg-accttggttaagttataagagacccgttccatctcatctaa 209  Q
    | |||| || ||| ||| | |||||||||||| || |||||||  ||||||||||||||||    
T  35334188 aggctgaatacgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaa 35334248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 13948587 - 13948694
Alignment:
Q  55 tccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagct 154  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||| | ||| || |||| ||||||||||||||||||| || ||  |||| |||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggct 13948686  T
Q  155 ggattcga 162  Q
    ||||||||    
T  13948687 ggattcga 13948694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 33529409 - 33529325
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaa 133  Q
    |||||||||| ||||||||||||||||||||||||| ||  ||||| || |||||| ||||||| ||||| ||||||||||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 13686741 - 13686591
Alignment:
Q  62 gcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcc-taagagttttaacactgttgtatgtccaaagctggattc 160  Q
    ||||||| ||||||||||| ||||||| |||||||| |||||| | |||||  |||| || ||||||||||||| ||| || | | |||| | |||||||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattc 13686642  T
Q  161 g-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    | ||||| |||||||||||||  | ||||||||| | ||||||||||||||    
T  13686641 gaacccaggaccttggttaagcaagaagagacccatgccatctcatctaag 13686591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 10199213 - 10199255
Alignment:
Q  168 gaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10199213 gaccttggttaagttataagagacccgttccatctcatctaag 10199255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 46250545 - 46250657
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    |||||||| ||| |||| |||||||||||| | |||||| | ||| || |||||| ||||||||||| | | ||||||||||||||||| || ||| |||    
T  46250545 tatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgccca 46250644  T
Q  150 aagctggattcga 162  Q
    |  ||||||||||    
T  46250645 agactggattcga 46250657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 18841639 - 18841556
Alignment:
Q  48 ggtatcctccgcgcgcaact-gcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttt 130  Q
    ||||||||||| |||||||| |||||||||||||||| |||| ||||  ||||||||| |||||||  |||| |||||||||||    
T  18841639 ggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaaactctacctaagagttt 18841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 2434710 - 2434598
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    |||||||||| |||||||||||| || |||| ||||||| ||||  || | ||||  ||| ||  || ||| |||||||||||||  |||||||||||||    
T  2434710 tatcctccgcccgcaactgcggataccaatcactcgagccttgtaggacctaaatgagcgacaaacttttcgtaagagttttaacgttgttgtatgtcca 2434611  T
Q  150 aagctggattcga 162  Q
    | |||||||||||    
T  2434610 aggctggattcga 2434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 7096254 - 7096163
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    |||||||||||| |||||| ||||||| | ||||||||| || |||| |||| ||| | |||| ||||| | ||||| |||||||||||||||    
T  7096254 aaatcgggtatc-tccgcgtgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaac 7096163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 15133528 - 15133496
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatc 80  Q
    |||||||||||||||||||||||||||||||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatc 15133496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 31308456 - 31308364
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    |||| |||||| |||||| | |||||| |  |||||||||||| | | ||||| || | |||||| |||||| ||||||||||||||||||||    
T  31308456 aaattgggtattctccgcacacaactgagaggactaatccctcaaacattgtgggacctaaatagacggcagactcttcctaagagttttaac 31308364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 37241358 - 37241394
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaa 78  Q
    ||||| |||||||||||||||||||||||||||||||    
T  37241358 aaatcaggtatcctccgcgcgcaactgcggagactaa 37241394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 17135247 - 17135092
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||||||| ||||||||   |||||||||||||||||  || || ||  |||||  ||||||  |||| ||||||||||||||| ||| || |||  ||    
T  17135247 tatcctccgtgcgcaacttttgagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcaca 17135148  T
Q  150 aagctggattcgacccatgaccttggttaagttataagagacccgttccatctcat 205  Q
    | ||||||||||| | | ||| ||| ||||| || ||||||| |||  ||||||||    
T  17135147 aggctggattcgaactaggactttgattaagctagaagagacacgtgtcatctcat 17135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 22017605 - 22017527
Alignment:
Q  60 gcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactg 138  Q
    |||||||||  |||| ||||| ||||| | ||||| ||| ||||||||||||| ||| | |||||| ||||||||||||    
T  22017605 gcgcaactgtagagattaatcgctcgatcattgtgtgattcaaataggcggcaagctttccctaagggttttaacactg 22017527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 22189399 - 22189461
Alignment:
Q  71 gagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaa 133  Q
    ||||||||| |||||||| ||||| || ||| ||||||||||  |||| ||||||||||||||    
T  22189399 gagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaa 22189461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 56447115 - 56447224
Alignment:
Q  52 tcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaa 151  Q
    ||||| |||||||| |||  ||| ||||||||| ||  ||||| ||||||||| ||  |||  |||| ||||||||||||||||||| || ||| ||| |    
T  56447115 tcctctgcgcgcaattgcatagattaatccctcaagtcttgtg-gatccaaatgggtagcaaactctccctaagagttttaacactgctgcatgcccata 56447213  T
Q  152 gctggattcga 162  Q
    |||||||||||    
T  56447214 gctggattcga 56447224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 29059960 - 29059793
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||| ||||||||||||| ||||||||||||||||||| || |||    
T  29059960 cgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 29059861  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
     |||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  29059860 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtg 29059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 206
Target Start/End: Complemental strand, 31492258 - 31492097
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||| ||||||||||||| ||||||||||||||||||| || |||    
T  31492258 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31492159  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatc 206  Q
     |||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||    
T  31492158 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 21747028 - 21747189
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    |||||||||||||| |||||||| ||||||||||||||||  ||||| || |||||| || || ||||||| ||||||||||||||| |||  | ||| |    
T  21747028 ggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcc 21747127  T
Q  148 caaagctggattcgacccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
     |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21747128 taaagctggattcgacccaggaccttggttaagttagaagagacccgttccatctcatctaa 21747189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 8839262 - 8839432
Alignment:
Q  42 aaatcgggtatcctccgcg--cgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgt 139  Q
    |||||||||||| ||||||  ||||| |||||||||||||||||||||  ||||| |||| |||||||||||||  ||| ||||||||||||||| |||     
T  8839262 aaatcgggtatc-tccgcgtgcgcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgc 8839360  T
Q  140 tgtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    || ||| |||| |||||||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||    
T  8839361 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaag 8839432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 209
Target Start/End: Original strand, 19477249 - 19477399
Alignment:
Q  59 cgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggat 158  Q
    |||||||||||||||||||||||||| ||| ||||| || |||||| | ||||| ||||| |||||||||||||||||||||| ||| |||| |||||||    
T  19477249 cgcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggat 19477347  T
Q  159 tc-gacccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    ||  |||||  |||||||||||| || |||||||||||||||||||||||||    
T  19477348 tcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaa 19477399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 28537541 - 28537380
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| | |    | |||||| ||||||||||||| |||||||||||||||  ||||| |||    
T  28537541 cgggtatccttcgcgtgcaactgcggagactaatccctcaagcatgg----acccaaatgggcggcaggctctccctaagagttttaacgttgttgcatg 28537446  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||| |||||||||| |||||  |||||| |||||||| ||||||||||||||||||||||||||    
T  28537445 cccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaag 28537380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 35708001 - 35707838
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||  |||| |||| || |||| | ||| ||||||| |||||||  ||||| |||    
T  35708001 cgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatg 35707902  T
Q  146 tccaaagctggattcgacccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    ||||||| ||||||||| |||  |||||||||||  || |||||||| |||| |||| ||||||    
T  35707901 tccaaagttggattcgaaccagaaccttggttaaactagaagagacctgttcaatctaatctaa 35707838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 46373834 - 46373663
Alignment:
Q  42 aaatcgggtatcctccgcgcgc--aactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgt 139  Q
    |||||||||||| |||||||||  ||||||  ||||||||| ||||||| ||||| || |||||||||||||| ||||| |||| ||||||||||  |||    
T  46373834 aaatcgggtatcttccgcgcgcgaaactgccaagactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgt 46373735  T
Q  140 tgtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||| ||||  ||||||||| ||||| || |||| ||||| || ||||||||||   |||||||||||||    
T  46373734 tgtatgcccaagactggattcgaacccaggatcttgcttaagctagaagagacccgcgtcatctcatctaag 46373663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 13254117 - 13254252
Alignment:
Q  76 taatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatgaccttg 174  Q
    ||||||||||||| ||||| || | |||| ||||||||||||| ||||||||||| ||| ||| || ||| | || |||||||||| || || |||||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  175 gttaagttataagagacccgttccatctcatctaag 210  Q
    |||||| || ||||||||||||||||||||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaag 13254252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 37339715 - 37339803
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttt 130  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||||||| ||||  ||||||||||    
T  37339715 aaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 11486730 - 11486843
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||||||||||||||  |||||||||| || |||| |||||  | |||||| ||||||| ||||||| ||||||||||||||| | || |||    
T  11486730 cgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacagatgcatg 11486829  T
Q  146 tccaaagctggatt 159  Q
     |||| ||||||||    
T  11486830 cccaaggctggatt 11486843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 20207649 - 20207564
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||    
T  20207649 gtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaac 20207564  T

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Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 42741791 - 42741886
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactg 138  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||  || || || |||||| || |||||| ||| ||||| |||||||||||||    
T  42741791 aaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattatg-gacccaaatgggtggcaggttctccctaaaagttttaacactg 42741886  T

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Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 40099312 - 40099423
Alignment:
Q  100 caaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttcc 198  Q
    ||||| ||||||| ||||| ||||||||||||||  ||| || || |||||||||||||||| |  || || ||| |||||| || ||||||||||||||    
T  40099312 caaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagacccgttcc 40099411  T
Q  199 atctcatctaag 210  Q
    ||||||||||||    
T  40099412 atctcatctaag 40099423  T

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Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 28665244 - 28665183
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggc 108  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| || | ||||||||    
T  28665244 gggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggaccaaaataggc 28665183  T

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Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 24172364 - 24172246
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttccta--agagttttaacactgttgta 143  Q
    ||||||| ||||||||||||||||  |||||||||| |||||| ||||| ||||||| | ||||||| |||||  |||  |||||||||||  ||||| |    
T  24172364 cgggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttgca 24172265  T
Q  144 tgtccaaagctggattcga 162  Q
    || |||| | |||||||||    
T  24172264 tgcccaaggttggattcga 24172246  T

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Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 14545070 - 14545006
Alignment:
Q  74 actaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactg 138  Q
    |||||||| |||||| ||||| || |||||| | ||||||||||| |||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactg 14545006  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 31776571 - 31776494
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaag 125  Q
    |||||||||||| |||||||||| ||| ||||||||||||  ||||| || |||||| ||| || |||||| ||||||    
T  31776571 ggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgggcagctggctctccctaag 31776494  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 36821069 - 36821113
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcgagcgttgt 93  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||    
T  36821069 gtatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 5905850 - 5905803
Alignment:
Q  172 ttggttaagttataagagacccgttccatctcatctaagtgtttttgg 219  Q
    |||||||||||| ||||||| ||||| |||||||||||| ||||||||    
T  5905850 ttggttaagttagaagagactcgttctatctcatctaagcgtttttgg 5905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 14552515 - 14552482
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaat 79  Q
    ||||||||||| ||||||||||||||||||||||    
T  14552515 cgggtatcctctgcgcgcaactgcggagactaat 14552482  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 29428792 - 29428857
Alignment:
Q  60 gcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaag 125  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||| | |||||  |||| ||||||    
T  29428792 gcgcaactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaactctccctaag 29428857  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 45779017 - 45778968
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgaga 97  Q
    ||||||||||   |||||||||||||||||||||||||||  ||||||||    
T  45779017 ggtatcctccattcgcaactgcggagactaatccctcgagtattgtgaga 45778968  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2657947 - 2657987
Alignment:
Q  170 ccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||||| |||||||| ||||||| ||||||||||||||||||    
T  2657947 ccttgattaagttagaagagactcgttccatctcatctaag 2657987  T

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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 4125006 - 4125177
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||||| |||||||||||||||| || ||    
T  4125006 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctg 4125105  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
     ||| |||| ||| |||||| ||||| ||| ||||||||| || ||||||||||||||||||||||||||||    
T  4125106 catgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtg 4125177  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 2744088 - 2743924
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| | || || ||||| ||||||||||||||||||| || |||    
T  2744088 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
     |||| |||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  2743988 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaa 2743924  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 12958077 - 12958236
Alignment:
Q  52 tcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaa 151  Q
    |||||||||||| |||||||||||||||||||||||| ||||| || |||||| |||| |||||||| ||||||||||||||| ||| || ||| ||||     
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  152 gctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||||||  ||||||||||||||||||| || |||||||  |||||||||||||||||    
T  12958177 gctggattcaaacccatgaccttggttaagctagaagagactagttccatctcatctaag 12958236  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 30936159 - 30935992
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||| | |||||||||||||||||||||||||||||||| | ||||  || |||||| ||||||||||||| |||||||||||||||  || || |||    
T  30936159 cgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatg 30936060  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
       || |||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||    
T  30936059 cttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtg 30935992  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 13468731 - 13468895
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||| ||  ||||| |||||||| ||||  |||||||||||||| ||| |  |||    
T  13468731 cgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatg 13468830  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
     |||| |||||||||| ||||| ||||||||||||| || |||||||||||||||||| ||||||    
T  13468831 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

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Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 19715713 - 19715877
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccc-tcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||| || |||||| ||||||| ||||| ||| ||||||||||| ||| || |||     
T  19715713 ggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgc 19715812  T
Q  147 ccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||| |||||||||| ||||| ||||||||||||| || || ||||  |||||||||||||||||    
T  19715813 ccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaag 19715877  T

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Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 7839239 - 7839326
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||| ||||| ||||||||||||||    
T  7839239 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaa 7839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 36994502 - 36994651
Alignment:
Q  62 gcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg 161  Q
    |||||||| |||||||||||||||||| ||||| || |||||| ||| |||  |||| | ||||||||||||| ||| || |||||||| ||||||||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  162 -acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||||| ||||||||||||  || |||||||  || |||||| |||||||    
T  36994602 aacccaggaccttggttaaactagaagagacatgtgccatcttatctaag 36994651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 30055991 - 30056151
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||| |||| |||||||   |||||||||||||||||| |||||  | |||||| | ||||||||||| ||||||||||||||  ||| || ||| | |    
T  30055991 tatcccccgcacgcaactaaagagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgccta 30056090  T
Q  150 aagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    | |||||||| | |||||||||||| |||||| || |||||||  ||||||||||||||||    
T  30056091 aggctggatttgaacccatgaccttcgttaagctagaagagacatgttccatctcatctaa 30056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 15683059 - 15682928
Alignment:
Q  71 gagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatga 169  Q
    |||| ||||||||||||| ||||| || | |||| ||||||||||||| ||||||||||||||| ||| || ||| |||| |||||||||| || || ||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagga 15682960  T
Q  170 ccttggttaagttataagagacccgttccatc 201  Q
    ||||| ||||| || ||||||| |||||||||    
T  15682959 ccttgattaagctagaagagactcgttccatc 15682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 39086905 - 39086859
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtg 94  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39086905 ggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtg 39086859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 27121804 - 27121899
Alignment:
Q  114 gctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatcta 208  Q
    ||||||||||| |||||||||||||||| |||   ||||||||||||| |||||  || ||||||||| || |||||||||||   ||||||||||    
T  27121804 gctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 8521856 - 8521805
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtg 94  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||| |||||    
T  8521856 aaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtg 8521805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 39086850 - 39086808
Alignment:
Q  168 gaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||||||||||||| || ||||| ||||||||||||||||||||    
T  39086850 gaccttggttaagctagaagaggcccgttccatctcatctaag 39086808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 40320255 - 40320185
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggca 112  Q
    |||| ||||||||||||||  ||||| | |||||||||| ||||||| | ||| ||||||||||| |||||    
T  40320255 aaattgggtatcctccgcgtacaactacagagactaatctctcgagcatcgtgggatccaaatagacggca 40320185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 35207079 - 35206990
Alignment:
Q  122 taagagttttaacactgttgtatgtccaaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||||||||||||| ||| || |||||||| | |  |||||| ||||  | ||||||||||||| |||||||| ||| |||||||||||||    
T  35207079 taagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 10592086 - 10591915
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||  ||||| |||||||| |||| ||||||||||||||||||| ||    
T  10592086 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctg 10591987  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
     ||| |||| |||||||||| ||||| ||||||||||||  || ||||||||||||||||||||||||||||    
T  10591986 catgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtg 10591915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 22187984 - 22188147
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||| || ||||||||||||||| ||||  | |||||||||||| ||||||||||    
T  22187984 cgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactct--ccaagagttttaacgctgttgtatg 22188081  T
Q  146 tccaaagctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||| |||||||||  |||||  ||||||||||||||| ||||||  ||||| ||||||||||||    
T  22188082 cccaaggctggattcaaacccaataccttggttaagttagaagagattcgttcaatctcatctaag 22188147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 31113493 - 31113320
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||| ||||| ||||||| ||||||||||||||||||| ||    
T  31113493 aaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 31113394  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtgtt 214  Q
     ||| |||| |||| ||||| ||| |  |||||  ||||| || || ||||||||| |||||||||||| ||||    
T  31113393 catgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaaatgtt 31113320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 5123485 - 5123598
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||| || |||     
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 5123584  T
Q  147 ccaaagctggattc 160  Q
    |||| |||| ||||    
T  5123585 ccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 30784974 - 30785136
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||| | |||| |  |||||  ||| |||||||||||||||  || || |||||    
T  30784974 ggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtc 30785073  T
Q  148 caaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    |||||||||||||| ||||| ||| ||| ||||| || ||||||| |||||||||||||||||    
T  30785074 caaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatctaa 30785136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 35774743 - 35774636
Alignment:
Q  43 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgt 142  Q
    ||||||||||| |||||| ||||||| ||||| |||| | |||||  ||||||||  |||||  |||||| ||||| |||||| ||||||||| |||||     
T  35774743 aatcgggtatcttccgcgtgcaactgaggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgc 35774644  T
Q  143 atgtccaa 150  Q
    ||||||||    
T  35774643 atgtccaa 35774636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 18909313 - 18909449
Alignment:
Q  72 agactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatgac 170  Q
    ||||||||||||||||| ||||| ||| |||||  ||||||   ||| ||||||||||||||||||| || ||  |||| |||||||||| ||| | |||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggac 18909412  T
Q  171 cttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||| ||||| |   ||| |||||||| ||||||||||||    
T  18909413 cttgattaagct---agaaacccgttctatctcatctaag 18909449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 28023494 - 28023594
Alignment:
Q  111 caggctcttcctaagagttttaacactgttgtatgtccaaagctggattcgacc-catgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    |||||||| ||||| ||||||||||||  | |||| | || ||||||||||| | || ||| ||||||||| || |||||| ||||||||||||||||||    
T  28023494 caggctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaa 28023593  T
Q  210 g 210  Q
    |    
T  28023594 g 28023594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 36213033 - 36212962
Alignment:
Q  64 aactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaaca 135  Q
    |||||||||||| |||||||||||| ||||| || | |||| |||||||  |||| ||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaaca 36212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 373746 - 373840
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacac 136  Q
    |||| |||||||||||| ||||||||||||||| |||||||| || | ||||  || |||||||| |||||   ||||||||| | |||||||||    
T  373746 aaattgggtatcctccgtgcgcaactgcggagattaatcccttgaacattgtatgacccaaatagacggcaaaatcttcctaacaattttaacac 373840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 19329680 - 19329560
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||| |||||||||| ||  ||||||   ||||||||||||||| | |||||||| |||| | |  ||||  ||||| ||||||||||||||||||| |    
T  19329680 aaatcaggtatcctccacgtccaactgattagactaatccctcgaaccttgtgagacccaatttgaaggcaaactctttctaagagttttaacactgtcg 19329581  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||||| ||| || |||||||    
T  19329580 catgtcaaaatctagattcga 19329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 25983820 - 25983742
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaa 124  Q
    ||||||||||||| | ||||||||||||||||||| ||||| | || || ||  ||||| ||||||| ||||| |||||    
T  25983820 cgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaagctctccctaa 25983742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 12682787 - 12682750
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcga 86  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  12682787 gtatcctccgcgcgcaactgcgaagactaattcctcga 12682750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 22402108 - 22402027
Alignment:
Q  60 gcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||| ||||||||||||| ||||| ||   ||||||||||||  | ||||||   |||||||||| |||||    
T  22402108 gcgcaactgcggagattaatccctcgagcattgtgtgacttaaataggcggcaaacccttcctgcaagttttaacattgttg 22402027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 42745102 - 42745267
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||  | |||||||||| |||| |||| |||||||||||||||| || || |||    
T  42745102 cgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatg 42745201  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  42745202 cccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaag 42745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 5394555 - 5394387
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| |||||||||||||||| || ||    
T  5394555 aaatcgagtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctg 5394457  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||| |||| |||||||||| ||||| ||||||||||||| || ||||||| ||||||||||||||||||    
T  5394456 catgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaag 5394387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 31579215 - 31579382
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||| ||   |||| |||||||| |||| ||||| |||||||||||||||| |||    
T  31579215 cgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatg 31579314  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
     |||| |||||||||| ||||| ||||||| ||||| || |||||||||||| |||||||||||||||    
T  31579315 cccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctcatctaagtg 31579382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 18105353 - 18105513
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||| ||||||||||||| | ||||| |||||||  ||||| ||| |||    
T  18105353 tatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgccca 18105451  T
Q  150 aagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    | |||||||||| ||||| ||||||||||||| || ||||||| ||||||||||||| ||||    
T  18105452 aggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatataag 18105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 44732619 - 44732726
Alignment:
Q  106 ggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctca 204  Q
    ||||||||||||| ||||||||||||||||||| || ||| |||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  44732619 ggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctca 44732718  T
Q  205 tctaagtg 212  Q
    ||||||||    
T  44732719 tctaagtg 44732726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 9438126 - 9438286
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||| ||  ||||| ||||||||| ||||||||||||||||||| ||| || ||| |||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgccca 9438225  T
Q  150 aagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    | |||||||||| ||| | ||| ||||||||| || ||||||  |||||||||||||||||    
T  9438226 aggctggattcgaaccaaagactttggttaagctaaaagagattcgttccatctcatctaa 9438286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 17981652 - 17981488
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||  |||||| ||||| ||||||||||||||   ||||| |||    
T  17981652 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttgttgcatg 17981554  T
Q  146 tccaaagctgga-ttcgacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||||  ||||| ||  |  || ||| ||||||||| || ||||||| ||||||||||||||||||    
T  17981553 cccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaag 17981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 12133269 - 12133381
Alignment:
Q  99 ccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcga-cccatgaccttggttaagttataagagacccgttc 197  Q
    |||||| | ||||||||||| |||||||||||||||  || || |||||||| ||||||||||| |||||||||||| ||||| || ||||||| |||||    
T  12133269 ccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttc 12133368  T
Q  198 catctcatctaag 210  Q
    |||||||||||||    
T  12133369 catctcatctaag 12133381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 25423903 - 25423821
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaa 124  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||| || |||||| ||||||||| ||| |||||    
T  25423903 aaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 37568787 - 37568880
Alignment:
Q  120 cctaagagttttaacactgttgtatgtccaaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctcatctaagtg 212  Q
    ||||||||||||||||||| || ||| | || ||||||||||| |||| ||||||||||||| || |||| |||||||||||||||||||||||    
T  37568787 cctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtg 37568880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 14551633 - 14551555
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttc 120  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||| ||||  || ||||||||||||||| ||||||    
T  14551633 aaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcggcagactcttc 14551555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 7157600 - 7157488
Alignment:
Q  99 ccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttc 197  Q
    |||||||||||||||||||| |||||||||||||||  || || ||| |||| ||| |||||| ||| | || ||||||||||||| ||||||| |||||    
T  7157600 ccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagactcgttc 7157501  T
Q  198 catctcatctaag 210  Q
     ||| ||||||||    
T  7157500 tatcccatctaag 7157488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 33757102 - 33756958
Alignment:
Q  76 taatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcgacccatg-accttg 174  Q
    ||||||||| ||| ||||| ||| |||||  ||| || ||||||||||||||||||||| || |||||||  ||| |||| |||||| | | | ||||||    
T  33757102 taatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaaccttg 33757003  T
Q  175 gttaagttataagagacccgttccatctcatctaagtgtttttgg 219  Q
     ||||| || |||||||||||  ||||||||||||||||| ||||    
T  33757002 attaagctagaagagacccgtgtcatctcatctaagtgttcttgg 33756958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 37179983 - 37180098
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||  ||||| ||  ||||| |||||||  |||| ||||||||     |||||||||    
T  37179983 aaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgttg 37180077  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||||||||  ||||||||||    
T  37180078 catgtccaagactggattcga 37180098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 993906 - 993744
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    |||||||||| |||||||| ||||| |||||||| |  ||  ||||  || |||||| ||||||| | ||| ||||||||||||| | ||| || ||| |    
T  993906 ggtatcctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcc 993808  T
Q  148 caaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||| | || |||||| |||| ||||||||||||| |||||||||| |||  |||||||||||||    
T  993807 caaggttgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaag 993744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 38743879 - 38743805
Alignment:
Q  60 gcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||  |||||| ||||| || || |||||||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaac 38743805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 38372978 - 38373064
Alignment:
Q  44 atcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagtttta 132  Q
    |||||||||||||||||||||||||   |||||||| ||| |||| ||||| || ||  || ||||||| |||||||||||||||||||    
T  38372978 atcgggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccc--atgggcggcaagctcttcctaagagtttta 38373064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 7020352 - 7020508
Alignment:
Q  52 tcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaa 151  Q
    |||||||||||||||||  |||||||||| ||||||| ||||  || |||||| ||||||| | ||| ||||||| |||||||| || || ||| || ||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatg-cctaa 7020449  T
Q  152 gctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
      || ||||| |  || ||||||||||||| || ||||||||||| | |||||||||||    
T  7020450 attgaattcgaattcaagaccttggttaagctagaagagacccgtgcaatctcatctaa 7020508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 28365981 - 28365939
Alignment:
Q  168 gaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  28365981 gaccttggttaagttagaagagacgcgttccatctcatctaag 28365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 37092181 - 37092223
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagc 88  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  37092181 cgggtatcctccgtgcacaactgcggagactaatccctcgagc 37092223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 1682181 - 1682136
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgag 87  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||    
T  1682181 aaattgggtatcctctgtgcgcaactgcggagactaatccctcgag 1682136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 17655822 - 17655758
Alignment:
Q  42 aaatcgggtatcctccgcgc--gcaactgcggagactaatccctcgagcgttgtgagatccaaat 104  Q
    ||||| |||||||||| |||  ||||||||||||||||||||||||||| |||||  ||||||||    
T  17655822 aaatcaggtatcctcctcgcacgcaactgcggagactaatccctcgagccttgtggaatccaaat 17655758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 34386630 - 34386566
Alignment:
Q  54 ctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctct 118  Q
    ||||||||| |||||| |||| ||||| ||||||| || |||||||||||||| ||||| |||||    
T  34386630 ctccgcgcgtaactgcagagattaatctctcgagcattatgagatccaaatagacggcaagctct 34386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 19252506 - 19252540
Alignment:
Q  70 ggagactaatccctcgagcgttgtgagatccaaat 104  Q
    ||||||||||||||||||| |||||||||||||||    
T  19252506 ggagactaatccctcgagccttgtgagatccaaat 19252540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 24412909 - 24413000
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    |||| |||||||||||  ||| |||||||||||||||| |||| ||  ||||| ||  |||||||| |||| |||| |||| |||||||||||    
T  24412909 aaattgggtatcctcctagcggaactgcggagactaattcctcaagtattgtgggactcaaataggtggcaagctc-tccttagagttttaac 24413000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 40688761 - 40688813
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtg 94  Q
    ||||||| ||| |||||  |||||||||| ||||||||| |||||||||||||    
T  40688761 aaatcggttattctccgttcgcaactgcgaagactaatctctcgagcgttgtg 40688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 26486 - 26332
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||| || |||||| ||||||||||||| ||||||||||||||||||| || |||    
T  26486 cgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 26387  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttcca 199  Q
     |||| |||||||||| ||||| ||||||||||||| || |||||||||||||||    
T  26386 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttcca 26332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 31412281 - 31412088
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||| ||||||||| ||||||||| ||||||||||  ||||||| |||||  | |||||| |||||||| |||| ||||||||||||||||||| ||    
T  31412281 aaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctg 31412182  T
Q  142 tatgtccaaagctggattcgacccatgaccttggttaagttataagagacccgttccatctcatctaagtgtttttggatttctttgtcctttg 235  Q
     | | ||||||||| |||||| |||||||||| |||||  ||| ||||||||||||||||||||||||||| | |||| || ||||||||||||    
T  31412181 cacgcccaaagctgaattcgatccatgaccttagttaaactatgagagacccgttccatctcatctaagtgctcttgggttcctttgtcctttg 31412088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 12411303 - 12411138
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| ||   |||| |||||||| |||||||||||||||||||| ||| || |||    
T  12411303 cgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatg 12411204  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||| |||||||||| || || |||||||||||||||| |||||||| |||||||||||||||||    
T  12411203 cccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaag 12411138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 12836883 - 12836999
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |||||| ||||||  ||||| ||||||||||||||| ||| || |||    
T  12836883 cgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatg 12836982  T
Q  146 tccaaagctggattcga 162  Q
     | || |||||||||||    
T  12836983 cctaaggctggattcga 12836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 21910357 - 21910196
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    ||||||||||||| |||||||||||||||||||||| |||  ||||| || | ||||  ||||||| ||||  ||||||||||||||  ||||| ||| |    
T  21910357 ggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcc 21910259  T
Q  148 caaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    ||| |||||||||| ||||| || |||||||||| || |||||||  ||| ||||||||||||    
T  21910258 caaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaa 21910196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 28099397 - 28099251
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||  |  ||||| | || ||   ||| ||||| ||||||||||||| || |||     
T  28099397 gggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgc 28099298  T
Q  147 ccaaagctggattcg-acccatgaccttggttaagttataagagacc 192  Q
    |||| |||||||||| ||||| |||||| |||||| || ||||||||    
T  28099297 ccaaggctggattcgaacccaggaccttagttaaggtagaagagacc 28099251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 31107481 - 31107643
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    ||||||||| |||||||| | | |||||||||| |||||   ||||| ||  ||||| | ||| | ||||| || |||||||||||| |||||| |||||    
T  31107481 ggtatcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtc 31107580  T
Q  148 caaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    ||| |||||||||| || ||  ||||| ||||||||| ||||||||| || ||||||||||||    
T  31107581 caatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaa 31107643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 15614560 - 15614724
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    ||||||||||| | |||||||| | |||||||| ||| |||| ||||| ||  |||||||| || | | |||||| || |||||||||  || |  ||||    
T  15614560 gggtatcctccacacgcaactgtgaagactaattcctagagcattgtgggactcaaataggtggtaagttcttccgaaaagttttaacgttgctacatgt 15614659  T
Q  147 ccaaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||||  ||| |||||| |||||||| |||||||||||| ||||||| ||||||||||||| ||||    
T  15614660 ccaagactgaattcgaacccatgacattggttaagttagaagagactcgttccatctcatataag 15614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 21028982 - 21029129
Alignment:
Q  63 caactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt------ccaaagctgg 156  Q
    ||||||||||||||||||||| |||| |||||  | |||||| |||||||  ||||  |||||||||||||| ||| || || |      |||| |||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcatctgcatgcccaaggctgg 21029079  T
Q  157 attcga-cccatgaccttggttaagttataagagacccgttccatctcat 205  Q
    |||||| |||| ||||||||||||| || ||||||||||| |||||||||    
T  21029080 attcgaacccaagaccttggttaagctagaagagacccgtgccatctcat 21029129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 9536918 - 9536844
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaa 124  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||  ||| |||| | ||| ||||||| |||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 17177290 - 17177233
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaatag 106  Q
    ||||||||||||| ||| | |||||| ||||||||||||  |||||||||||||||||    
T  17177290 gtatcctccgcgcacaattacggagattaatccctcgagtattgtgagatccaaatag 17177233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 278550 - 278383
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||| | ||||||| |  ||||||||||| |||  ||||| || | |||| | |||||  |||| | ||||||||||||   |||||    
T  278550 aaatcgggtatcctccgtgtgcaactgtgacgactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaa-tgtgttg 278452  T
Q  142 tatgtccaaagctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
     ||| ||||||||||||||  || || |||||| |||||| || ||||||| |||  ||||||||||||    
T  278451 catgcccaaagctggattcaaactcaagaccttagttaagctagaagagactcgtgtcatctcatctaa 278383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 1534409 - 1534320
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaa 133  Q
    ||||||| ||||||||||||  |||||||||||  ||| |||||||| ||||| ||  ||||| |||| || ||||| ||||||||||||||    
T  1534409 aaatcggatatcctccgcgc--aactgcggagatcaattcctcgagcattgtgcgactcaaatgggcgacaagctctccctaagagttttaa 1534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 6062182 - 6062110
Alignment:
Q  61 cgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaa 133  Q
    |||||||||| |||||||||| |||| ||||||  || ||||||   ||||| ||||||||||||||||||||    
T  6062182 cgcaactgcgaagactaatccatcgaacgttgtaggacccaaatgaacggcaagctcttcctaagagttttaa 6062110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 31868637 - 31868679
Alignment:
Q  120 cctaagagttttaacactgttgtatgtccaaagctggattcga 162  Q
    |||||||||||||||| |||||||||||||| | |||||||||    
T  31868637 cctaagagttttaacattgttgtatgtccaaggttggattcga 31868679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 423782 - 423645
Alignment:
Q  74 actaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcga-cccatgacct 172  Q
    ||||||||||||||| ||||| ||  ||||| | ||||||  | |  |||||||||||||| |||  | ||| |||| ||||||||| | ||||  ||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaacct 423683  T
Q  173 tggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||||  || |||||| | |||||||||||||||||    
T  423682 tggttaaactagaagagatctgttccatctcatctaag 423645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 5944947 - 5944847
Alignment:
Q  96 gatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcgacc-catgaccttggttaagttataagagacccg 194  Q
    |||| |||| |||||||  |||| ||||| |||||||||| ||||  ||||| ||  ||| |||||| | || |||||||||||||||| ||||||||||    
T  5944947 gatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaagagacccg 5944848  T
Q  195 t 195  Q
    |    
T  5944847 t 5944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 21028845 - 21028914
Alignment:
Q  63 caactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    ||||||||||||||||||||| |||| |||||  | |||||| |||||||  ||||  ||||||||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaac 21028914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30995955 - 30996116
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || ||| || |||||||| |||| ||||||||||||||| |||||| ||| |||    
T  30995955 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgccca 30996054  T
Q  150 aagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    | |  ||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  30996055 aggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctcatctaag 30996116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 27763872 - 27763713
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcca 149  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| ||  ||||| | |||||| |||| |||||||||||||||||||||||||| |||    
T  27763872 tatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgccca 27763773  T
Q  150 aagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    | |||||||||| ||||| |||||||||||||   || ||||||||||| ||||||||||||    
T  27763772 aggctggattcgaacccaggaccttggttaag--ctaggagacccgttctatctcatctaag 27763713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 38331287 - 38331118
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | | ||||| || |||||| ||||||| |||||  |||||||||||||| ||| ||    
T  38331287 aaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctg 38331188  T
Q  142 tatgtccaaagctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     |||  ||||| |||||||  || || ||| |||||||||||| |||||||||| |||||||||||||||    
T  38331187 catgctcaaagttggattcaaactcaggacattggttaagttagaagagacccgatccatctcatctaag 38331118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 48204293 - 48204462
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||| |||||  | |||||| | || || ||||| |||||| ||||||||  || ||    
T  48204293 aaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctg 48204392  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||| |||| |||||||||| ||||| ||||||||||||| || ||||||| ||||||||||||||||||    
T  48204393 catgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaag 48204462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 25224854 - 25224689
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||| |||||||||||||||||||||| |||| ||||| || | |||| ||||||| | ||| | ||||||||||||| ||| || ||     
T  25224854 cgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcatt 25224755  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||||| || |||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||    
T  25224754 cccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaag 25224689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 20861402 - 20861289
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    ||||||||||||||| |||||||||||||||||||||||||| || ||  | |||||| ||||||||||||| ||||||||||||||| ||| || |||     
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgc 20861303  T
Q  147 ccaaagctggattc 160  Q
    |||| |||||||||    
T  20861302 ccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 55123256 - 55123136
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||  ||| ||||| ||||||| ||||||| ||| ||    
T  55123256 aaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctg 55123157  T
Q  142 tatgtccaaagctggattcga 162  Q
     || ||||| |||||||||||    
T  55123156 catttccaaggctggattcga 55123136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 8757499 - 8757431
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcagg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  8757499 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcggcagg 8757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 40294771 - 40294603
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||||||||||  | |||||||||||||||||||||| |||||  ||||| ||| |||||  |||||| ||| | |||||||||||||||| |||||    
T  40294771 aaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttg 40294672  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
     || ||||| |||||||||| || || ||||||| ||||| || | ||||| |||  ||||||||||||    
T  40294671 catatccaaggctggattcgaactcaggaccttgattaaggtagaggagactcgtgtcatctcatctaa 40294603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 38088737 - 38088625
Alignment:
Q  99 ccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctggattcgacccatg-accttggttaagttataagagacccgttc 197  Q
    |||||||||||||| | ||| ||||||||||||||| ||  || ||| |||||||||||||||| ||  | |||||||||||| || ||||||||||||     
T  38088737 ccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgttt 38088638  T
Q  198 catctcatctaag 210  Q
    |||||||||||||    
T  38088637 catctcatctaag 38088625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 1642765 - 1642645
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||  ||||| || |||||| | ||| || |||| ||||| ||||||||||| | ||    
T  1642765 aaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctg 1642666  T
Q  142 tatgtccaaagctggattcga 162  Q
     |||| ||| ||| |||||||    
T  1642665 catgttcaaggctagattcga 1642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 48210943 - 48211099
Alignment:
Q  43 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgt 142  Q
    ||||||||||| |||||| |||||||||||||  ||| |||||||  ||||| || | |||||| ||||| ||||| | |||||||||||||  || ||     
T  48210943 aatcgggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgc 48211042  T
Q  143 atgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttcc 198  Q
    |||  ||| |||||||||| ||| |  |||||| |||||||| ||||||||||||||    
T  48211043 atgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgttcc 48211099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 22288390 - 22288214
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||||||| ||||||| ||||||||| ||| |||  |||||  |  ||||| | || || | ||| |||||||||||||||| ||||| |||    
T  22288390 cgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatg 22288291  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtgtttttggat 221  Q
    | ||| |||| ||||| || || ||| |||||||||||| ||||||  | |  ||||||||||||| | ||||||||    
T  22288290 ttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctcatctaagcgcttttggat 22288214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 39950371 - 39950235
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||| |||||||||||||  |||||||||||||||||||| |||||| ||||  |||||||||   || |||  ||| ||||| | ||||||| ||| ||    
T  39950371 aaattgggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctg 39950272  T
Q  142 tatgtccaaagctggattc-gacccatgaccttggtt 177  Q
     ||||||||| ||||||||  ||||| ||||||||||    
T  39950271 catgtccaaaactggattctaacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 40318435 - 40318475
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcga 86  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40318435 cgggtatcctccgcgcgcaactgcggagactaatccctcga 40318475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 46604670 - 46604711
Alignment:
Q  169 accttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  46604670 accttggttaagttataagagactcgttccatctcatctaag 46604711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 43621294 - 43621386
Alignment:
Q  43 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagc-gttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||   |||| || |||| ||||| ||||| |||||||||    
T  43621294 aatcgggtatcctctgcgcgcaactacagagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaac 43621386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 44941255 - 44941316
Alignment:
Q  50 tatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggca 112  Q
    |||||||||||||||||||||||||||||| |||||||| |  || ||||||||| |||||||    
T  44941255 tatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcggca 44941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 42514698 - 42514594
Alignment:
Q  109 ggcaggctcttcctaagagttttaacac--tgttgtatgtccaaagctggattcga-cccatgaccttggttaagttataagagacccgttccatctcat 205  Q
    |||| ||||| ||||||||||||||| |  || || ||| |||||| ||||||||| |||| ||| || |||||| || ||||||| |||| ||||||||    
T  42514698 ggcaagctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcat 42514599  T
Q  206 ctaag 210  Q
    |||||    
T  42514598 ctaag 42514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 11767269 - 11767161
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||||| |||| || |||| |||||||||| || |   ||||| ||  ||||| ||||||| || ||| ||||||||||||| | |||||    
T  11767269 aaatcgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgttg 11767170  T
Q  142 tatgtccaa 150  Q
     ||| ||||    
T  11767169 catgcccaa 11767161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 28967288 - 28967340
Alignment:
Q  165 catgaccttggttaagttataagagacccgttccatctcatctaagtgttttt 217  Q
    ||||||||||||||||||| ||||||| |||  |||||||| |||| ||||||    
T  28967288 catgaccttggttaagttagaagagactcgtgtcatctcatgtaagcgttttt 28967340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 16756241 - 16756072
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||   || || ||||| ||||||||||||||| ||  ||    
T  16756241 aaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctg 16756142  T
Q  142 tatgtccaaagctggattc-gacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
     ||| |||| |||| ||||  |||||  |||||||||||| || |||||| |||||||||||||||||||    
T  16756141 catgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaag 16756072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 28724827 - 28724663
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||  ||  ||||| | |||||| ||||||||||||||||||||||||||| |||    
T  28724827 cgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatg 28724728  T
Q  146 tccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    | ||| |||| ||||| | ||| || |||  ||||| || ||||||| ||||||||||||||||||    
T  28724727 ttcaaggctgaattcgaatccagga-ctttattaagctagaagagactcgttccatctcatctaag 28724663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 42297430 - 42297516
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaac 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||| |||| |||||||||||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaac 42297516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 22022274 - 22022111
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    ||||||||||| || |||||||||||||||||||||||||   ||||| || |||||| || |||| | ||| ||||||||||||||  ||| || |||     
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  147 ccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    |||| |||||||||| |||||  ||||| |||||| || |||||||| ||||||||||||||||    
T  22022174 ccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaa 22022111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 15642614 - 15642526
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttt 130  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| || |||||| |||||||  |||| |||||||||||    
T  15642614 aaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 18428124 - 18428243
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |  |||||| | | |||| |||| ||||| ||||||||||||| ||    
T  18428124 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtg-gggccaaatggacagcagactctccctaaaagttttaacactgctg 18428222  T
Q  142 tatgtccaaagctggattcga 162  Q
     ||| |||| | |||||||||    
T  18428223 catgcccaaggttggattcga 18428243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 36806766 - 36806650
Alignment:
Q  46 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatg 145  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||||  | |||||| |||||||| | || ||||||||||||||| ||  ||||||    
T  36806766 cgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatg 36806667  T
Q  146 tccaaagctggattcga 162  Q
     |||| |||| ||||||    
T  36806666 cccaaggctgaattcga 36806650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 9780976 - 9781091
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgt 146  Q
    |||||| |||||||| ||||| |||| ||||||||||||||| ||||| || |||||| |||||| | |||| ||||||||||||||| ||| || |||     
T  9780976 gggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgc 9781075  T
Q  147 ccaaagctggattcga 162  Q
    |||| |||||||||||    
T  9781076 ccaaggctggattcga 9781091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 12035709 - 12035546
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagag-ttttaacactgtt 140  Q
    |||||| ||||| ||| || |||| ||| |||||||||||||||||| ||||| || |||||| |||||||| |||| |||||||| |||||||| ||||    
T  12035709 aaatcgagtatcatccacgtgcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgtt 12035610  T
Q  141 gtatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctc 203  Q
    | ||| | || |||||||||| ||| | ||| ||||||||  || ||||||||| |||||||||    
T  12035609 gcatgccaaaggctggattcgaaccaaagactttggttaaactagaagagaccctttccatctc 12035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 7242795 - 7242909
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    |||||| |||||||||||||||||||||||||||||||||  || |||||| ||||| || || || |||| |||||||||||||||  || || |||||    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtc 7242894  T
Q  148 caaagctggattcga 162  Q
    |||  ||||||||||    
T  7242895 caagactggattcga 7242909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 45806388 - 45806226
Alignment:
Q  49 gtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtcc 148  Q
    ||||||||| |||| |||||| ||||||||||  ||||   ||||||||   |||||||||| | ||||| |||||||||||||| |||| || ||| ||    
T  45806388 gtatcctccacgcgtaactgcagagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgccc 45806289  T
Q  149 aaagctggattcgacc-catgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    ||  ||| |||||| | || ||||||||||||| || ||||||||||||| ||||||||||||    
T  45806288 aagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaag 45806226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 10750756 - 10750588
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||| ||||||||| |||||||||||   ||||||||||||||| | ||||| ||||||||| ||||||| || |  ||||||||||||||| ||| ||    
T  10750756 aaatcaggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaagcgc-acctaagagttttaacgctgatg 10750658  T
Q  142 tatgtccaaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||| ||||   | |||||| ||||| |||||||||||| ||| || ||||  ||| |||||||||||||    
T  10750657 tatgcccaagattagattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaag 10750588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 39547355 - 39547442
Alignment:
Q  51 atcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactg 138  Q
    |||||| ||||||||||||||||| |||||| |||| | |||||||| | ||||||||||||| |||  |||||||||||| ||||||    
T  39547355 atcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactg 39547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 46864250 - 46864133
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttg 141  Q
    ||||| ||||||||  |||||||||||| |||||||||||||||| | |||||| | |||||| | ||||| | ||| ||||||| ||||||| ||  ||    
T  46864250 aaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactg 46864151  T
Q  142 tatgtccaaagctggatt 159  Q
     ||| |||||||||||||    
T  46864150 catgcccaaagctggatt 46864133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 29124825 - 29124727
Alignment:
Q  121 ctaagagttttaacactgttgtatgtccaaagctggattcgacc-catgaccttggttaagttataagagacccgttccatctcatctaagtgtttttg 218  Q
    |||||||||||||| ||| || ||| |||| ||||||||||| | ||||||| |||||||| || ||||||| |||| ||||||||||||  |||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaacgtttttg 29124727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 32534235 - 32534074
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtc 147  Q
    ||||||||| |||||||| |||||||||||| | ||||||| |||||||| || ||| ||||| | |||||  ||||||||||||||  ||||| |||      
T  32534235 ggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgaga-cctaatgggcggtaagctctctctaagagttttaacgttgttgcatgct 32534137  T
Q  148 caaagctggattcg-acccatgaccttggttaagttataagagacccgttccatctcatctaa 209  Q
    |||||||| ||| | | |||  |||||||||||| || |||| ||||||  ||| ||||||||    
T  32534136 caaagctgaatttgaatccaaaaccttggttaagctagaagaaacccgtgtcatatcatctaa 32534074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 44913262 - 44913180
Alignment:
Q  48 ggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttt 130  Q
    ||||||||| ||||| |||||| |||||||||| ||||||| ||||| || ||| || ||||||| ||||| |||||||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 6607691 - 6607854
Alignment:
Q  57 cgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaacactgttgtatgtccaaagctgg 156  Q
    |||| ||| ||||||||||||||||||||||| |||||||| | ||||   |  || | |||| ||||||||||||    |||||||||||||||| | |    
T  6607691 cgcgtgcagctgcggagactaatccctcgagcattgtgagacctaaatgaacatcaagttctttctaagagttttatttatgttgtatgtccaaagttag 6607790  T
Q  157 attcg-acccatgaccttggttaagttataagagacccgttccatctcatctaagtgtttttgg 219  Q
    ||||| || || |||| || |||||||| ||||||| |||  |||| |||||||| ||| ||||    
T  6607791 attcgaactcaagaccatgattaagttagaagagactcgtgtcatcccatctaagcgttcttgg 6607854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 14500358 - 14500409
Alignment:
Q  159 tcgacccatgaccttggttaagttataagagacccgttccatctcatctaag 210  Q
    |||||||| ||||||||||||| || ||||||||||||||||| ||||||||    
T  14500358 tcgacccaggaccttggttaagctagaagagacccgttccatcgcatctaag 14500409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 49071736 - 49071674
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaat 104  Q
    ||||||| |||| ||||| |||||||||||||||||||| ||||||| ||||| || ||||||    
T  49071736 aaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaat 49071674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 10367663 - 10367575
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttt 130  Q
    ||||||||||| || ||| |||||||||||||| |||||| |||||| ||||  || |||||| ||||| || |||| | |||||||||    
T  10367663 aaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 32883561 - 32883622
Alignment:
Q  74 actaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaaca 135  Q
    ||||||||||||||  ||||| | ||||||| |||||||  |||| ||||||||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggcaaactctccctaagagttttaaca 32883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 36087000 - 36086923
Alignment:
Q  58 gcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagttttaaca 135  Q
    ||||||| || |||||||||||||||| ||| | |||||| | |||||| |||||  || ||| ||||||||||||||    
T  36087000 gcgcgcagctacggagactaatccctccagcatcgtgagacctaaatagacggcaaacttttcataagagttttaaca 36086923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 789872 - 789805
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcgg 110  Q
    |||||| |||| ||||||| |||||||| ||||||||| |||||||| || ||||| | ||||||||||    
T  789872 aaatcgagtattctccgcgtgcaactgccgagactaat-cctcgagctttatgagacctaaataggcgg 789805  T

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Target: scaffold0009 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 27212 - 27296
Alignment:
Q  47 gggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaataggcggcaggctcttcctaagagtttt 131  Q
    |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||||    
T  27212 gggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 29134 - 29196
Alignment:
Q  42 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcgttgtgagatccaaat 104  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||    
T  29134 aaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaat 29196  T

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