View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_high_1 (Length: 928)

Name: NF9954_high_1
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_high_1
NF9954_high_1
[»] chr8 (16 HSPs)
chr8 (324-928)||(14726647-14727253)
chr8 (1-244)||(14727334-14727576)
chr8 (635-928)||(30648218-30648511)
chr8 (635-920)||(26088519-26088804)
chr8 (759-924)||(28865374-28865540)
chr8 (759-924)||(15329278-15329443)
chr8 (759-924)||(15509647-15509812)
chr8 (1-129)||(30648585-30648713)
chr8 (659-927)||(29552134-29552402)
chr8 (1-160)||(26088914-26089076)
chr8 (3-69)||(15329612-15329678)
chr8 (3-69)||(15509981-15510047)
chr8 (3-69)||(28865709-28865775)
chr8 (797-918)||(24508494-24508615)
chr8 (416-468)||(28700543-28700595)
chr8 (418-467)||(30085518-30085567)
[»] chr7 (4 HSPs)
chr7 (606-920)||(6611905-6612219)
chr7 (36-183)||(17292927-17293074)
chr7 (871-928)||(17293999-17294056)
chr7 (423-468)||(43930098-43930143)
[»] chr1 (3 HSPs)
chr1 (1-168)||(26086673-26086840)
chr1 (635-928)||(26087151-26087444)
chr1 (423-468)||(29068075-29068120)
[»] chr3 (2 HSPs)
chr3 (767-920)||(4819163-4819316)
chr3 (423-468)||(29235644-29235689)
[»] chr5 (1 HSPs)
chr5 (423-468)||(5990658-5990703)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 324 - 928
Target Start/End: Complemental strand, 14727253 - 14726647
Alignment:
Q  324 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattagaaacagataagtgtaatctatagtttctctcacactttataatacg 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |    
T  14727253 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattaaaaacatacacgtgtaatctatagtttctctcacactttataatatg 14727154  T
Q  424 aggagtgttatggacaccctctttctaacactttctgtaaca--ctctattttcggaataattcatgtgggtctcagactttaaaatctagtgagactcg 521  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||| || | |||||||||||||||||||| ||||||||||| || ||||||||||    
T  14727153 aggagtgttatggacaccctctttctaacactttctctaacatactctcttctgggaataattcatgtgggtcttagactttaaaaactggtgagactcg 14727054  T
Q  522 catggagttcaaccaataggagatccggtgttagagagagtgttcctggcatttaatagaggcaaaaactagaaacatataacagagacatgtgatttta 621  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14727053 catggagttcaaccaataggagatcctgtgttagagagagtgttcttagcatttaatagaggcaaaaactagaaacatataaaagagacatgtgatttta 14726954  T
Q  622 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagc 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  14726953 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatatattattttctagg 14726854  T
Q  722 tgttcagcacctctcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctccc 821  Q
    | |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||     
T  14726853 ttttcagcacctctcttacaattttctttgagccagccaacaagtacttgaagtgcctcaaactgttcattcttaacagcaatatgcagtgcagtctcct 14726754  T
Q  822 gccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaa 921  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14726753 gccttacagtcaagtattcaatggattccggacacaataagagaaagcaaactaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaa 14726654  T
Q  922 gccttct 928  Q
    |||||||    
T  14726653 gccttct 14726647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14727576 - 14727334
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  14727576 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctccaaattcttttccttcaaatttataccagtacttaccaacaa 14727477  T
Q  101 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727476 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaa 14727377  T
Q  201 acaacctatctactttataagttgtctttccctcatctttcttt 244  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  14727376 acaacctatctactttataagttgtc-ttccctcatcttccttt 14727334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 635 - 928
Target Start/End: Complemental strand, 30648511 - 30648218
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| | ||||||||||| ||||||||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||| || ||| ||||    
T  30648511 attacctgcgggtcactacttagtgctgaaatatgcaaaattgtgttgcttgccttatccctttggtttaatattttattttccagcttttgagcccctc 30648412  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    |||    ||||  |||||| |||  ||||||||||||||| |||||| | | |||||| ||||||| | | || ||||||||||| ||||| ||||||||    
T  30648411 tctgtgtattttttttgagccagctaacaagtacttgaagggcctcatattgttcatttttaacagaaatatggagtgcagtctcgcgcctcacagtcaa 30648312  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttct 928  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |  | ||||||||||||||||| ||| |||||||||||||||| |||||||    
T  30648311 gtattcaattgattccggacacaaacggagaaagtaagctaacatttgaacctcaccattttgacatgcaaaatgaagaggagttatgccttct 30648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 635 - 920
Target Start/End: Complemental strand, 26088804 - 26088519
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| | ||||||| ||| ||||||||||||||||| |||||||   |||||||||  |||||||||||| |||||||||||  || ||| | ||    
T  26088804 attacctgcgggtcactacgtagtgctgaaatatgcaaaatcgtgttgcgtgcctcatcccactggtttaatattctattttccagcatttgagcccttc 26088705  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    ||||    |||  | |||| |||  ||||||||||||||| |||||||||| | |||||||||||||| | ||||||||||||||  |||| ||||| ||    
T  26088704 tctttgtgtttgttctgagccagataacaagtacttgaagagcctcaaactgtccattcttaacagcaatatgcagtgcagtctcgtgcctcacagttaa 26088605  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagtta 920  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||| |||||||||| |||||||||| ||||||||||||||||    
T  26088604 gtattcaatagattccggacacaagaagagaaagtattctaaatgattaacctcaccaatttgacttgcaaaatgaagaggagtta 26088519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 759 - 924
Target Start/End: Complemental strand, 28865540 - 28865374
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcag-tctcccgccttacagtcaagtattcaatggattccggacaca 857  Q
    ||||||| |||||||  |||||||| | ||||||||||| |||| | |||||||  | |||| | ||| |||||| | | |||||||||||| |||||||    
T  28865540 caacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgcagtgggggtctcacacctcacagtccaatcttcaatggattctggacaca 28865441  T
Q  858 aaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagcc 924  Q
    | |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  28865440 ataagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc 28865374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 759 - 924
Target Start/End: Complemental strand, 15329443 - 15329278
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    ||||||| |||||||  | |||||| | ||||||||||| |||| | |||||||  ||||| | ||| |||||| | | |||||||||||| |||||| |    
T  15329443 caacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattctggacacga 15329344  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagcc 924  Q
     |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  15329343 gaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc 15329278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 759 - 924
Target Start/End: Complemental strand, 15509812 - 15509647
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    ||||||| |||||||  | |||||| | ||||||||||| |||| | |||||||  ||||| | ||| |||||| | | |||||||||||| |||||| |    
T  15509812 caacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattctggacacga 15509713  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagcc 924  Q
     |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  15509712 gaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagcc 15509647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 30648713 - 30648585
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||   ||||||| ||| |||||  ||||||||||||||||||||    
T  30648713 ttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctcactattctttgccttcaaatctataccagtacttaccaacaa 30648614  T
Q  101 ttgaagtgcctgtgctaccaagtaattaa 129  Q
    | ||||||||||| |||| ||| ||||||    
T  30648613 tagaagtgcctgtactacaaagaaattaa 30648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 659 - 927
Target Start/End: Complemental strand, 29552402 - 29552134
Alignment:
Q  659 gctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctctcttacaatttactttgaggcagt 758  Q
    |||||||| |||||||| ||||||||  || ||||| | ||||| | ||||||||||||||  | |  ||||||| || |  |||||  ||  || |||     
T  29552402 gctgaaatgtgcaaaatagtgttgcctgccacatccttctggttcagtattttattttccatatctatagcacctatcctgtaatttttttccagccagc 29552303  T
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    |||| |||||||  || || || |||| | |||| |||| |||| | || ||||| ||||| | ||| ||||||||||||||||| ||||| |||||       
T  29552302 caactagtacttttagggcgtcgaactgtgcattattaatagcaatatgaagtgcggtctcgcacctcacagtcaagtattcaatagattcaggacatgc 29552203  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttc 927  Q
       |||||||||||||||||| |||||||| ||| |||| |||||  ||||||||||||| ||||||||    
T  29552202 gttgagaaagtaagctaaaaggtcaacctctccaatttggcttgcataatgaagaggagtcaagccttc 29552134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26089076 - 26088914
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgat---accagtacttaccaa 97  Q
    ||||||||||||||||||  ||||| ||||||| |||||||||||| ||||||||||| | |||||||      ||||  ||   |||||||| || |||    
T  26089076 ttaataatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttctccagattctttgaacataaatctatacgaccagtacgtaacaa 26088977  T
Q  98 caattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatg 160  Q
     ||| |||||||||||||||| ||| |||| | ||||| |||| || ||||| ||||||||||    
T  26088976 taatagaagtgcctgtgctacgaagaaattgaagaacaatacaattattagagatcattcatg 26088914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 15329678 - 15329612
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  15329678 aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 15329612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 15510047 - 15509981
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  15510047 aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 15509981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 28865775 - 28865709
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  28865775 aataatatactcttaatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 28865709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 918
Target Start/End: Complemental strand, 24508615 - 24508494
Alignment:
Q  797 acagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccatttt 896  Q
    |||||| | |||| ||||||||  | ||| ||||| | || |||||||||||| |||||   |||||| |  | ||||||||  ||| ||||||||||||    
T  24508615 acagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccatttt 24508516  T
Q  897 gacttgcgaaatgaagaggagt 918  Q
    ||||||| ||||||||||||||    
T  24508515 gacttgcaaaatgaagaggagt 24508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 28700543 - 28700595
Alignment:
Q  416 ataatacgaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||| ||||||||||||| |||| |||||||||||||| ||| ||||||||    
T  28700543 ataataagaggagtgttatgtacactctctttctaacactctctctaacactc 28700595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 30085567 - 30085518
Alignment:
Q  418 aatacgaggagtgttatggacaccctctttctaacactttctgtaacact 467  Q
    |||| ||||| |||||||||||| |||||||||||||| ||| |||||||    
T  30085567 aataagaggaatgttatggacactctctttctaacactctctctaacact 30085518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 7e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 606 - 920
Target Start/End: Original strand, 6611905 - 6612219
Alignment:
Q  606 gagacatgtgattttagttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaa 705  Q
    ||||||||||||||||||||||  ||||  |||||||  ||||  ||||||| ||||||||||||||||||||||||||  |||||||||| | ||||||    
T  6611905 gagacatgtgattttagttattcaataaggttacctggcgctccgtacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaa 6612004  T
Q  706 tattttattttccagctgttcagcacctctct-tacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagt 804  Q
    ||||| ||||||||||| ||  |||||| ||  |||| | |  | | || ||| ||||||||||| |||| |||||||| | || |||||||| |||| |    
T  6612005 tatttgattttccagcttttgcgcacctatcgctaca-tgtgttctcagccagccaacaagtactcgaagggcctcaaattgttgattcttaatagcaat 6612103  T
Q  805 gtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcg 904  Q
     ||||||||||||||  |||| |||||||| |||||||||||||||||||||||   |||||| | |||||||||||||||||||||| ||||||||||     
T  6612104 atgcagtgcagtctcgtgcctcacagtcaaatattcaatggattccggacacaacttgagaaatttagctaaaagatcaacctcaccaatttgacttgca 6612203  T
Q  905 aaatgaagaggagtta 920  Q
    ||||||||||||||||    
T  6612204 aaatgaagaggagtta 6612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 17292927 - 17293074
Alignment:
Q  36 atgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaaca 135  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||| || |||||||||||||||||| |||| |||||||||||  ||||||| ||||||     
T  17292927 atgtctaatgctgttttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaagcgcctgtgctacatagtaattcatgaacg 17293026  T
Q  136 gtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaag 183  Q
     |||| |||||| | ||||||||| | |||||||||||| ||||||||    
T  17293027 atacaattgttaaagatcattcatattagcaactaaaatattcacaag 17293074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 871 - 928
Target Start/End: Original strand, 17293999 - 17294056
Alignment:
Q  871 agctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttct 928  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  17293999 agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagccttct 17294056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 43930143 - 43930098
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  43930143 gaggagtgttatggacactctctttctaacactctctctaacactc 43930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26086673 - 26086840
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||| ||||||    
T  26086673 ttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattctttgcctcgaaatttataccagtacttagcaacaa 26086772  T
Q  101 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaac 168  Q
    | |||||  ||||||||||| ||| ||||| || | || |  ||||||| |||||||| || ||||||    
T  26086773 tagaagtttctgtgctaccacgtagttaataaaaaatataaatgttagagatcattcaagttagcaac 26086840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 635 - 928
Target Start/End: Original strand, 26087151 - 26087444
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||  | || ||||| | ||||||||||  ||||||||||| | |||| ||||    
T  26087151 attacctgcggctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagctctacagcgcctc 26087250  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    | |    ||||  || ||| ||  |||||||||||||||| |||||| | | ||||||||| | |||| | |||| ||| ||||| | ||| |||||||     
T  26087251 tttgtttatttgtttcgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcggtctcacacctcacagtcac 26087350  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttct 928  Q
     | |  |||||| |  ||||| | || ||| || | ||||||||| |||||||| ||| |||||||||| |||||||||| |||||||||||||    
T  26087351 atctctaatggaattaggacatacaaggaggaatttagctaaaaggtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttct 26087444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 29068075 - 29068120
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29068075 gaggagtgttatggacactctctttctaacactttctctaacactc 29068120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 767 - 920
Target Start/End: Complemental strand, 4819316 - 4819163
Alignment:
Q  767 acttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaa 866  Q
    |||||||| |||||| ||| ||||||| | |||||| | |||| |||||||||   ||| ||||||||||||||||| |||||||||||   ||||||||    
T  4819316 acttgaagggcctcatactgttcattcatgacagcaatatgcaatgcagtctcaaacctcacagtcaagtattcaatagattccggacaagcaaagagaa 4819217  T
Q  867 agtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagtta 920  Q
    | | ||||||||| |||||||| ||| |||||||||| ||||||||||||||||    
T  4819216 aattagctaaaagttcaacctcgccaatttgacttgcaaaatgaagaggagtta 4819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 29235644 - 29235689
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  29235644 gaggagtgttatggacactctctttctaacactctctctaacactc 29235689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 5990703 - 5990658
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  5990703 gaggagtgctatggacactctctttctaacactttctccaacactc 5990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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