View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_16 (Length: 474)
Name: NF9954_high_16
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 9795314 - 9794858
Alignment:
| Q |
1 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9795314 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
9795215 |
T |
|
| Q |
101 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9795214 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagtttggcatcacaaagacaagattaaaggagtgctaccttgtgtttatagaa |
9795115 |
T |
|
| Q |
201 |
gtcttctttatggttggtctctggagaggaatgtaaaggaatctaggagaattattcaagagatgaagacaaatggggtaaccccagatttagtttgcta |
300 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9795114 |
gtcttctttatggttggtctttggagaggaatgtgaaggaatcttggagaattattcaagagatgaagacaaatggggtaaccccagatttagtttgcta |
9795015 |
T |
|
| Q |
301 |
taatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggacttatgccggaagctttgaatgtgatgatggagatgaggtcttat |
400 |
Q |
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| T |
9795014 |
taatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggacttgtgctggaagctttgaatgtgatgatggagatgaggtcttat |
9794915 |
T |
|
| Q |
401 |
aaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagact |
457 |
Q |
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| T |
9794914 |
aaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagact |
9794858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 45145721 - 45146177
Alignment:
| Q |
1 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145721 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
45145820 |
T |
|
| Q |
101 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45145821 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagattggcatcacaaagacaagattaaaggagagctaccttgtgtttatagaa |
45145920 |
T |
|
| Q |
201 |
gtcttctttatggttggtctctggagaggaatgtaaaggaatctaggagaattattcaagagatgaagacaaatggggtaaccccagatttagtttgcta |
300 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45145921 |
gtcttctttatggttggtctatggagaggaatgtgaaggaatctaggagaattattcaagagatgaagacaaatggggtaaccccagatatagtttgcta |
45146020 |
T |
|
| Q |
301 |
taatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggacttatgccggaagctttgaatgtgatgatggagatgaggtcttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45146021 |
taatacattccttaggtgcctttgtgaaagaaatctcagaaataatccttccggacttgtgcaggaagctttgaatgtgatgatggagatgaggtcttat |
45146120 |
T |
|
| Q |
401 |
aaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagact |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45146121 |
aaggtttttccaacttcaatcagttacaacattttgctttcttgtttggggaagact |
45146177 |
T |
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