View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_high_17 (Length: 454)
Name: NF9954_high_17
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 94 - 438
Target Start/End: Original strand, 17459464 - 17459810
Alignment:
| Q |
94 |
taaatgaagata-gatacatatatcgccccctttgtatcgtatcattgcttccatcaccctatgattcaaatatcagtcaaacaagcnnnnnnnnn-tcc |
191 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17459464 |
taaatgaagataagatacatatatctccccctttgtatcgtatctttgcttccatcaccctatgattcaaatatcagtcaaacaagcaaaaaaaaaatcc |
17459563 |
T |
|
| Q |
192 |
tacgtcacaaacattgaatgacacactttccttagtccctttattatttgataaatatgaatcttaaagaggagaaacccctattaatcaagaaataatc |
291 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17459564 |
tacgtcacaaacattgaatcacacactttccttagtccctttattatctgataaatatgaatcttaaagaggagaaacccctattaatcaagaaataatc |
17459663 |
T |
|
| Q |
292 |
atcacttatgatagcagcacacatccctattacaatgtcaataatgtatatttcatactcagaatgagtttccaaaaccagacaaatatattaaaagtgt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17459664 |
atcacttatgatagcagcacacatccctattacaatgtcaataatgtatatttcatactcagaatgagtttccaaaaccagacaaatatattaaaagtgt |
17459763 |
T |
|
| Q |
392 |
tactaaagaatatatagcaaaagtagaaatgtaaatggactgccact |
438 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
17459764 |
tactaaagaataaatagcaaaattagaaatgtaaatggactgccact |
17459810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University