View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_22 (Length: 407)
Name: NF9954_high_22
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 33713033 - 33712644
Alignment:
| Q |
1 |
aaaatattaaaacatttgatgtcaaattgtatagacatagttaacttatttatttgtataaaatgttaactgattttagtgttttataaaaacaaaaccc |
100 |
Q |
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| T |
33713033 |
aaaatattaaaacatttgatgtcaaattgtatagacatagttaacttatttatttgtataaaatgttaactgattttagtgttttataaaaacaaaaccc |
33712934 |
T |
|
| Q |
101 |
aatttgatctaaagaattaccggttcaccgcgtaaaatcttcagttcacatcagtttgtatcagtttagttacacagccgatccaatacttggctcgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712933 |
aatttgatctaaagaattaccggttcaccgcgtaaaatcttcggttcacatcagtttgtatcagtttagttacacagccgatccaatacttggctcgaat |
33712834 |
T |
|
| Q |
201 |
ctgtcacgcctcatgttgcttgttggtcagtccgaccggtagtttcaaattggattttaaatcttttcttaaaagcacttatcaattgaactgttgaaat |
300 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712833 |
ctgtcacgtctcaggttgcttgttggtcagtccgaccggtagtttcaaattggattttaaatcttttcttaaaagcacttatcaattgaactgttgaaat |
33712734 |
T |
|
| Q |
301 |
taaatctataactctgttttttcaacgatgattatgacattttctgtttgaataagaaattgtttgaatctatatatgcagtcacatttt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712733 |
taaatctataactctgttttttcaacgatgattatgacattttctgtttgaataagaaattgtttgaatctatatatgcagtcacatttt |
33712644 |
T |
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