View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_24 (Length: 386)
Name: NF9954_high_24
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 53540834 - 53540467
Alignment:
| Q |
1 |
aaattcgggatttgatgtgtcacgatgttttccaaccctttcctcataccacattaatgcaccacatgattcacaattaaaacgtggctctcccacttga |
100 |
Q |
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| T |
53540834 |
aaattcgggatttgatgtgtcacgatgttttccaaccctttcctcataccacattaatgcaccacatgattcacaaacaaaacgtggctctcccacttga |
53540735 |
T |
|
| Q |
101 |
aagtaatctgcgttaaatttgcatacacataagtttgctctgatacatatctcatatgctagtttgatatgagacttgttaacataattttccacacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
53540734 |
aagtaatctgcgttaaatttgcatacacataagtttgctgtgatacatatctcatatgctaatttgatatgagacttgttaacataattgtccaaacaaa |
53540635 |
T |
|
| Q |
201 |
ttttctttatgctgcaaaaggtagaaagtttaaaaataacctgtgtcgttggctccatctacttcgtcttcatcttcaacatcatcttataaattggtta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540634 |
ttttctttatgctgcaaaaggtagaaagtttaaaaataacctgtgtcattggctccatctacttcgtcttcatcttcaacatcatcttataaattggtta |
53540535 |
T |
|
| Q |
301 |
agaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaatt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540534 |
agaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaatt |
53540467 |
T |
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