View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_high_25 (Length: 383)
Name: NF9954_high_25
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 38826982 - 38827331
Alignment:
| Q |
18 |
ggtgcttccaatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaa |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38826982 |
ggtgcttccgatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaa |
38827081 |
T |
|
| Q |
118 |
catggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
38827082 |
catggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttt |
38827181 |
T |
|
| Q |
218 |
caagtcagttgaataacttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaagagttgctgctcgaacttgaa |
317 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
38827182 |
taactcagttgaataacttactgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaggagttgctgctcgaactcgaa |
38827281 |
T |
|
| Q |
318 |
gaagagccgttgtttagggctacgttagaaaaccttaaagcgcaccttat |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38827282 |
gaagagccgttgtttagggctacgttagaaaaccttaaggcgcaccttat |
38827331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 38846590 - 38846915
Alignment:
| Q |
18 |
ggtgcttccaatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaa |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38846590 |
ggtgcttccgatccaacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaa |
38846689 |
T |
|
| Q |
118 |
catggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
38846690 |
catggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttt |
38846789 |
T |
|
| Q |
218 |
caagtcagttgaataacttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaagagttgctgctcgaacttgaa |
317 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||| || |
|
|
| T |
38846790 |
caactcagttgaataacttactgttgggaatgtcttgagagctttcttcttgattcctttgttggcaaattgaggtgaagagttgatgctagaactcaaa |
38846889 |
T |
|
| Q |
318 |
gaagagccgttgtttagggctacgtt |
343 |
Q |
| |
|
|||||| ||||| | | ||||||||| |
|
|
| T |
38846890 |
gaagagtcgttgatgatggctacgtt |
38846915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 34 - 340
Target Start/End: Original strand, 38861398 - 38861704
Alignment:
| Q |
34 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgatt |
133 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
38861398 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38861497 |
T |
|
| Q |
134 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataa |
233 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
38861498 |
gcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatag |
38861597 |
T |
|
| Q |
234 |
cttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaagagttgctgctcgaacttgaagaagagccgttgttta |
333 |
Q |
| |
|
|| | ||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||| ||||||||| ||||||| | |
|
|
| T |
38861598 |
ctcattgtaggaaatttcttgagagctttcttcttgattcctttgttgaccaattgaggtgaattgttgttgcttgaactcgaagaagagtcgttgttga |
38861697 |
T |
|
| Q |
334 |
gggctac |
340 |
Q |
| |
|
||||||| |
|
|
| T |
38861698 |
gggctac |
38861704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 34 - 364
Target Start/End: Original strand, 38840786 - 38841113
Alignment:
| Q |
34 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgatt |
133 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
38840786 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38840885 |
T |
|
| Q |
134 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataa |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
38840886 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38840985 |
T |
|
| Q |
234 |
cttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaagagttgctgctcgaacttgaagaagagccgttgttta |
333 |
Q |
| |
|
|| | ||| ||||||| ||| ||||||||||||||||||||||| || || ||||| | ||||| |||||| ||||||| ||||||| ||||||| | |
|
|
| T |
38840986 |
ctcactgtgggaaatgccttaagagctttcttcttgattcctttattgaccgattgaagcgaagaattgctgttcgaact---agaagagtcgttgttga |
38841082 |
T |
|
| Q |
334 |
gggctacgttagaaaaccttaaagcgcacct |
364 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |
|
|
| T |
38841083 |
tggctacgtttgaaaaccttaaggcacacct |
38841113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 34 - 322
Target Start/End: Original strand, 38858524 - 38858812
Alignment:
| Q |
34 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgatt |
133 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
|
| Q |
134 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataa |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || |
|
|
| T |
38858624 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38858723 |
T |
|
| Q |
234 |
cttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaagagttgctgctcgaacttgaagaaga |
322 |
Q |
| |
|
|| | ||| ||||||| ||| ||||||||||||||||||||||| || || ||||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
38858724 |
ctcactgtgggaaatgccttaagagctttcttcttgattcctttattgaccgattgaggcgaagaattgctgttcgaactagaagaaga |
38858812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 38851118 - 38850856
Alignment:
| Q |
34 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatgatt |
133 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||||| || |||||||| ||| | |||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
38851118 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38851019 |
T |
|
| Q |
134 |
gcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaataa |
233 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
38851018 |
gcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatag |
38850919 |
T |
|
| Q |
234 |
cttaatgttggaaatgtcttgagagctttcttcttgattcctttgttagccaattgaggtgaa |
296 |
Q |
| |
|
|| | ||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38850918 |
ctcattgtaggaaatttcttgagagctttcttcttgattcctttgttgaccaattgaggtgaa |
38850856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 38864851 - 38865099
Alignment:
| Q |
32 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgcctttagccatttgtcgatgcaacgaacatggaaaccatga |
131 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || ||||||| |||| |||||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38864851 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
38864950 |
T |
|
| Q |
132 |
ttgcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacacactctgtatccaaacttggtagtttcaagtcagttgaat |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| | ||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
38864951 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
38865050 |
T |
|
| Q |
232 |
aacttaatgttggaaatgtcttgagagctttcttcttgattcctttgtt |
280 |
Q |
| |
|
| || | ||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38865051 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttgtt |
38865099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 38865099 - 38865162
Alignment:
| Q |
304 |
tgctcgaacttgaagaagagccgttgtttagggctacgttagaaaaccttaaagcgcaccttat |
367 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38865099 |
tgctcgaactcaaagaagggtcgttgtgtagggctacgttagaaaaccttaaaccacaccttat |
38865162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 274
Target Start/End: Original strand, 43666059 - 43666239
Alignment:
| Q |
94 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggtaaaatgcgcaccttttcaccttttgtgaattctgagagacatattacaca |
193 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || || |||| |||||| || || || || ||||| || || |||||||| ||||| |
|
|
| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacaca |
43666158 |
T |
|
| Q |
194 |
ctctgtatccaaacttggtagtttcaagtcagttgaataacttaatgttggaaatgtcttgagagctttcttcttgattcc |
274 |
Q |
| |
|
||| | |||||||| || | ||||| ||| ||| ||||| | ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
43666159 |
ctccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University