View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_high_3 (Length: 684)

Name: NF9954_high_3
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_high_3
NF9954_high_3
[»] chr5 (5 HSPs)
chr5 (1-667)||(15433814-15434473)
chr5 (1-62)||(900885-900946)
chr5 (3-65)||(30839716-30839778)
chr5 (1-61)||(2250327-2250387)
chr5 (6-62)||(8317418-8317474)
[»] chr3 (6 HSPs)
chr3 (507-667)||(8184942-8185102)
chr3 (197-273)||(8184848-8184924)
chr3 (1-61)||(26847768-26847828)
chr3 (1-64)||(2043729-2043792)
chr3 (3-62)||(40034727-40034786)
chr3 (6-57)||(25288789-25288840)
[»] chr6 (8 HSPs)
chr6 (1-63)||(29396443-29396505)
chr6 (3-61)||(18141383-18141441)
chr6 (3-57)||(21203327-21203381)
chr6 (3-57)||(22956984-22957038)
chr6 (3-57)||(23831354-23831408)
chr6 (3-55)||(22995981-22996031)
chr6 (3-55)||(23792369-23792419)
chr6 (6-61)||(9961242-9961297)
[»] chr2 (1 HSPs)
chr2 (1-65)||(33538172-33538236)
[»] chr7 (4 HSPs)
chr7 (3-65)||(45849522-45849584)
chr7 (1-61)||(6494744-6494804)
chr7 (3-63)||(38174619-38174679)
chr7 (4-48)||(44732493-44732537)
[»] chr1 (3 HSPs)
chr1 (1-62)||(9388560-9388621)
chr1 (1-62)||(10366565-10366626)
chr1 (6-57)||(16752331-16752382)
[»] chr4 (5 HSPs)
chr4 (3-61)||(2728256-2728314)
chr4 (3-60)||(3684733-3684790)
chr4 (1-32)||(33152544-33152575)
chr4 (4-57)||(48150556-48150609)
chr4 (6-62)||(12842278-12842334)
[»] chr8 (3 HSPs)
chr8 (15-62)||(24511975-24512022)
chr8 (3-57)||(37819902-37819956)
chr8 (14-59)||(36796082-36796127)


Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Complemental strand, 15434473 - 15433814
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctattggatttggcatttcaacctgttacaagtttctttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434473 tcattaaaagtagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctattggatttggcatttcaacctgttacaagtttctttt 15434374  T
Q  101 acaatcatgtcaactatttatggtggttgatcaatttttcgtctagcgatgtttcgctacataaccagagaaagcatgcctgagcagagtatgcatggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15434373 acaatcatgtcaactatttatggtggttgatcaatttttcgtctagcgatgtttcgctacataaccacagaaagcatccctgagcagagtatgcatggta 15434274  T
Q  201 atggaaatggaaagtatgacagtacgcacaatgcagctgcaaagtaatatgttacaacaatcagaatgacatacaaaaacaaggaaaacagcagagtcgt 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434273 atggaaatggaaagtatgacagtacacacaatgcagctgcaaag---tatgttacaacaatcagaatgacatacaaaaacaaggaaaacagcagagtcgt 15434177  T
Q  301 gaaaaaagtaattaacaaatgttcatctcttatatattatattcatcgaannnnnnnnnnnnnnnnatgaaatagggaaaattttcctaattgatatcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  15434176 gaaaaaagtaattaacaaatgttcatctcttatatattatattcatcgaa----ttttttttttttatgaaatagggaaaattttcctaattgatatcat 15434081  T
Q  401 acaatacagtggcgtatggatccaccagaaaatttaaacgttataaaatacaaatagtatagacaaaattcacagttggcatttggcaaggataatnnnn 500  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  15434080 acaatacagtggcgtatggatccaccagaaaatttaaaagttataaaatacaaatagtatagacaaaattcacagttggcatttggcaaggataatcaaa 15433981  T
Q  501 nnnngtcatccaattctaagatcaccgagttcatataaatactttgaacatgaaaagcatcgtcaatgtgtggtatattacattgaacagaagattgtga 600  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15433980 aaacttcatccaattctaagatcaccgagttcatataaatactttgaacatgaaaagcattgtcaatgtgtggtatattacattgaacagaagattgtga 15433881  T
Q  601 attaattttccaactcggtttggttattaacaaaatattgatcaaggctaaataaagtagtaatagt 667  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15433880 attaattttccaactcggtttggttattaacaaaatatagatcaaggctaaataaagtagtaatagt 15433814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 900946 - 900885
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  900946 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 30839778 - 30839716
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 65  Q
    |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  30839778 attaaaaatagcaagtaaattgttggtcgtacaatttagttgttcacatatcattcctctatt 30839716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2250387 - 2250327
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    ||||||||||||  |||||| |||||| |||||||||||| || |||||||||||||||||    
T  2250387 tcattaaaaataataaataaattgttgattgtacaatttgattcttcacatatcattcctc 2250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 8317418 - 8317474
Alignment:
Q  6 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    |||||||||||| ||||||||||||||||||    | |||||| |||||||||||||    
T  8317418 aaaaatagcaaaaaagttgttggttgtacaaaaatgatgttcaaatatcattcctct 8317474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 507 - 667
Target Start/End: Original strand, 8184942 - 8185102
Alignment:
Q  507 catccaattctaagatcaccgagttcatataaatactttgaacatgaaaagcatcgtcaatgtgtggtatattacattgaacagaagattgtgaattaat 606  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  8184942 catccaattccaagatcactgagttcgtataaacactttgaacatggaaagcatcgtcaatatgtggtatattacatcgaacaaaagattgtgaattaat 8185041  T
Q  607 tttccaactcggtttggttattaacaaaatattgatcaaggctaaataaagtagtaatagt 667  Q
    |||||||||||||||||| ||||||||||||||||  | |||||| | |||||||| ||||    
T  8185042 tttccaactcggtttggtcattaacaaaatattgaaaagggctaatttaagtagtactagt 8185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 8184848 - 8184924
Alignment:
Q  197 ggtaatggaaatggaaagtatgacagtacgcacaatgcagctgcaaagtaatatgttacaacaatcagaatgacata 273  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||    
T  8184848 ggtaatggaaatggaaagtgtgacagtacacacaatgcagctgcaaaataatatgtcacaacagtcagaatgacata 8184924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26847768 - 26847828
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26847768 tcattaaaaatagcaaataagttgttggttgtacaatttgattgttcacatatcattcctc 26847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2043792 - 2043729
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctat 64  Q
    |||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  2043792 tcattaaagatagcaaataagttgttggttgtacaatttagttatttacatatcattcctctat 2043729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 40034786 - 40034727
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    ||||||||||  ||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  40034786 attaaaaataataaataagttgttggttgtacaatttgaatgttcacatatcatttctct 40034727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 25288840 - 25288789
Alignment:
Q  6 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||||| |||||| |||||||||||||||||  |||||||||| ||||||    
T  25288840 aaaaatagtaaataaattgttggttgtacaattatgttgttcacaaatcatt 25288789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29396505 - 29396443
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctcta 63  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29396505 tcattaaaaatagcaaataagttgttggttgtacaatttggctgttcacatatcattcctcta 29396443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 18141441 - 18141383
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  18141441 attaaaaatagaaaataagttgctggttgtacgatttggttgttcacatatcattcctc 18141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 21203327 - 21203381
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  21203327 attaaaaatatcaagtaagttgttgattgtacaatttggttgttcacatatcatt 21203381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 22957038 - 22956984
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  22957038 attaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 22956984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 23831354 - 23831408
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  23831354 attaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 23831408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22996031 - 22995981
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatca 55  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  22996031 attaaaaatagcaaa--agttgttggttatacaatttggttgttcacatatca 22995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23792369 - 23792419
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatca 55  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  23792369 attaaaaatagcaaa--agttgttggttatacaatttggttgttcacatatca 23792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 9961242 - 9961297
Alignment:
Q  6 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    |||||||||||||||||||||||||||||||    | |||||||||||||||||||    
T  9961242 aaaaatagcaaataagttgttggttgtacaaacgagatgttcacatatcattcctc 9961297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33538236 - 33538172
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 65  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  33538236 tcattaaaaatagtaaataagttgttggttgtacaatttgatttttcacatatcattcctctatt 33538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 45849522 - 45849584
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctatt 65  Q
    |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  45849522 attaaaaatagcaaataaattattggttgtacaatttggttgttcacgtatcattcctctatt 45849584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6494804 - 6494744
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  6494804 tcattaaaaatagcaaataagttattgattgtacaattttgttgttcacatatcattcctc 6494744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 38174679 - 38174619
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctcta 63  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||    
T  38174679 attaaaaatatcaagtaagttattggttgtacaatttggttgttcacgtatcattcctcta 38174619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 44732493 - 44732537
Alignment:
Q  4 ttaaaaatagcaaataagttgttggttgtacaatttggttgttca 48  Q
    ||||||||| |||||||||| |||||||||||| ||| |||||||    
T  44732493 ttaaaaataacaaataagttattggttgtacaaattgattgttca 44732537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9388621 - 9388560
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  9388621 tcattaaaaatagtaaataagttgttggttgtacaatttaattgttcacatatcattcctct 9388560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10366626 - 10366565
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  10366626 tcattaaaaataacaaataagttgttggttgtacaatttgattgttcacgtatcattcctct 10366565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 16752331 - 16752382
Alignment:
Q  6 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||||||||    
T  16752331 aaaaatagcaagtaagttgttggttgtacaaatgtgatgttcacatatcatt 16752382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 2728314 - 2728256
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctc 61  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||    
T  2728314 attaaaaatagcaagtaagttgttggttgtataatttagttgttcacatatcattcctc 2728256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 3684790 - 3684733
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcct 60  Q
    |||||||||||||||||  ||||||||| |||||||| ||||||||||||| ||||||    
T  3684790 attaaaaatagcaaatatattgttggttttacaatttagttgttcacatattattcct 3684733  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 33152544 - 33152575
Alignment:
Q  1 tcattaaaaatagcaaataagttgttggttgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  33152544 tcattaaaaatagcaaataagttgttggttgt 33152575  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 48150609 - 48150556
Alignment:
Q  4 ttaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||||||||||||||||||| |||||||||| |  | |||||||| ||||||    
T  48150609 ttaaaaatagcaaataagttgtcggttgtacaaatgagatgttcacaaatcatt 48150556  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12842334 - 12842278
Alignment:
Q  6 aaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    |||||||||||| ||||||||||||||||||    | |||||| |||||||||||||    
T  12842334 aaaaatagcaaagaagttgttggttgtacaaaaatgatgttcatatatcattcctct 12842278  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 24512022 - 24511975
Alignment:
Q  15 aaataagttgttggttgtacaatttggttgttcacatatcattcctct 62  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24512022 aaataagttgttggttgtacaatttggttgttcagatatcattcctct 24511975  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 37819902 - 37819956
Alignment:
Q  3 attaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcatt 57  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  37819902 attaaacatagcaaataaattgttggttgtacaatttagttgttcaaatatcatt 37819956  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 36796127 - 36796082
Alignment:
Q  14 caaataagttgttggttgtacaatttggttgttcacatatcattcc 59  Q
    |||||||||||||||||||| ||||| ||||||||| ||| |||||    
T  36796127 caaataagttgttggttgtataatttagttgttcacctataattcc 36796082  T

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