View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_30 (Length: 328)
Name: NF9954_high_30
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 12233929 - 12233620
Alignment:
| Q |
1 |
tatggggtagaaaaaactctgtcggctgtagcatatgccatgagatcaacgtgtgtgatgaaatgtgaaaacaaaagtacaaggtacatgtggtgtattt |
100 |
Q |
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| T |
12233929 |
tatggggtagaaaaaactctgtcggctgtagtatatgccatgagatcaacgtgtgtgatgaaatgtgaaaacaaaagtacaaggtacatgtggtgtattt |
12233830 |
T |
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| Q |
101 |
cctcgtggttcatacgaagttgtgaatattctcgatgtctttattgaccaaaatgattgaagaactcaagcaacttattatttcccaatagaaacaagaa |
200 |
Q |
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| T |
12233829 |
cctcgtggttcatacgaagttgtgaatattctcgatgtctttattgaccaaaatgattgaagaactcaagcaacttattatttcccaatagaaacaagta |
12233730 |
T |
|
| Q |
201 |
aaataaagaaaacaaactcatcttataggacatacaccaaaagccgtacaaataataattgttttaggtcttttattctttttta-ggttatacttttga |
299 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12233729 |
aaataaagaaaacaaactcatcatataggacata-accaaaagccgtacaaataataattgttttaggtcttttattcttttttagggttatacttttga |
12233631 |
T |
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| Q |
300 |
gatttaaacct |
310 |
Q |
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| T |
12233630 |
gatttaaacct |
12233620 |
T |
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