View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_31 (Length: 327)
Name: NF9954_high_31
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_31 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 22158186 - 22157878
Alignment:
| Q |
1 |
agtcacaaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaaca |
100 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158186 |
agtcataaggaaaattaaggtattatttgtttctatttctattcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaaca |
22158087 |
T |
|
| Q |
101 |
tttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158086 |
tttgtttggtgtagccttctttttatttcaaatatacctctactattttggtttttttcatatgtaatttctgataactcaaagtaactaatgtatggca |
22157987 |
T |
|
| Q |
201 |
gtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattg-tccagattacaattgaagagacatttcatctatatttaga |
299 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22157986 |
gtttttctatctatattttctaattgctaatgagaattgaggaatgagcggttctattgttccagattacaattgaagagacatttcatctatatttaga |
22157887 |
T |
|
| Q |
300 |
tagggaaac |
308 |
Q |
| |
|
||||||||| |
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| T |
22157886 |
tagggaaac |
22157878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 9765713 - 9765782
Alignment:
| Q |
174 |
ataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgagga |
243 |
Q |
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||||||| |||||||| || |||| ||| || ||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
9765713 |
ataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctattgagaattgagga |
9765782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 9333246 - 9332937
Alignment:
| Q |
1 |
agtcacaaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgatttttt-ccaacatatggagaaaac |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||| ||| |
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| T |
9333246 |
agtcacaaggaaaattaaggtattatttgtttctatttctatgcatgttatctgtttctaattccctacatatgatttttttccaacatatggagacaac |
9333147 |
T |
|
| Q |
100 |
atttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggc |
199 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |||||| |
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| T |
9333146 |
attggtttggtgtagccttctttttatttcaaatatacctctactattttgatttttttcatatgtaatttctgataactcaaagtaactgatctatggc |
9333047 |
T |
|
| Q |
200 |
agtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattg-tccagattacaattgaagagacatttcatctatatttag |
298 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
9333046 |
agttattctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgttccagattacaattgaagagacatttcatctatctttag |
9332947 |
T |
|
| Q |
299 |
atagggaaac |
308 |
Q |
| |
|
|||||||||| |
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|
| T |
9332946 |
atagggaaac |
9332937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 27273164 - 27273126
Alignment:
| Q |
222 |
aattgctaatgagaattgaggaatgagcggttctattgt |
260 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
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| T |
27273164 |
aattgctaatgagaattgaggattgagcggctctattgt |
27273126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 51861836 - 51862135
Alignment:
| Q |
7 |
aaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaacatttgtt |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| || ||| |
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|
| T |
51861836 |
aaggaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaattccc---atatgattttttccaacatatggagacaacgttggtt |
51861932 |
T |
|
| Q |
107 |
tggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggcagttttt |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
51861933 |
tggtgtagccttccatttatttcaaatatacccctactatttcggtttttttcatatgtaatttctgataactcaaagtaactgatctatggcagttttt |
51862032 |
T |
|
| Q |
207 |
ctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattg-tccagattacaattgaagagacatttcatctatatttagataggga |
305 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
51862033 |
ctatctatatttgctaaatgctaatgagaattgaggaatgagcgattctattgttccatattacaattgaagagacatttcatctatatttagctaggga |
51862132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 39482498 - 39482450
Alignment:
| Q |
260 |
tccagattacaattgaagagacatttcatctatatttagatagggaaac |
308 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39482498 |
tccaaattacaattgaagagacatttcatctatatttagatagggaaac |
39482450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 7807689 - 7807639
Alignment:
| Q |
210 |
tctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt |
260 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
7807689 |
tctatatttgccgattgctaataagaattgaggattgagcggtactattgt |
7807639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 43651807 - 43651711
Alignment:
| Q |
164 |
gtaatttctgataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt |
260 |
Q |
| |
|
|||| |||| ||||||| |||||||| || |||| ||| || ||||||||||||||| |||||||||||||||||||||| ||| | |||||||||| |
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|
| T |
43651807 |
gtaacttctaataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgt |
43651711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 21115016 - 21114920
Alignment:
| Q |
164 |
gtaatttctgataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt |
260 |
Q |
| |
|
|||| |||| ||||||| |||||||| || |||| || || ||||||||||||||| |||||||||||||||||||||| ||| | |||||||||| |
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|
| T |
21115016 |
gtaacttctaataactctaagtaactgatttatgataggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgt |
21114920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 81348 - 81426
Alignment:
| Q |
180 |
caaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt |
258 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| ||||||||| |||||| |||||||||||||| |||| ||||||||| |
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|
| T |
81348 |
caaagtaacaaatttgtggcagtttttctatttatatttgccgattgctgatgagaattgaggattgagaggttctatt |
81426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 24863896 - 24863748
Alignment:
| Q |
95 |
aaaacatttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaacta--at |
192 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||| |||||||||| | ||| | ||| |||| |||||||||||||||| || |
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|
| T |
24863896 |
aaaacatttgtttggt--agcctatttttcatttcaaatatacccctactatttcaggttatttcatctataacttctaataactcaaagtaactttgat |
24863799 |
T |
|
| Q |
193 |
gtatggcagtttttctatctatatttgctaattgctaatgagaattgagga |
243 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
24863798 |
ttatgacagtttctctatctatatctgtcaattgctaatgacaattgagga |
24863748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 13550421 - 13550383
Alignment:
| Q |
222 |
aattgctaatgagaattgaggaatgagcggttctattgt |
260 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13550421 |
aattgctaatgagaattgaggattgaggggttctattgt |
13550383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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