View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_high_36 (Length: 290)

Name: NF9954_high_36
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_high_36
NF9954_high_36
[»] chr7 (31 HSPs)
chr7 (21-277)||(20947417-20947675)
chr7 (23-179)||(43937895-43938052)
chr7 (63-179)||(43938160-43938277)
chr7 (23-144)||(47081884-47082005)
chr7 (63-158)||(26825896-26825991)
chr7 (21-179)||(37563355-37563514)
chr7 (63-144)||(35262663-35262744)
chr7 (70-158)||(34454507-34454595)
chr7 (63-158)||(23191120-23191214)
chr7 (73-144)||(15827758-15827829)
chr7 (63-158)||(27558118-27558213)
chr7 (73-144)||(34454756-34454827)
chr7 (21-160)||(5636249-5636388)
chr7 (79-179)||(5280553-5280654)
chr7 (63-144)||(12931004-12931085)
chr7 (79-144)||(20947230-20947295)
chr7 (63-144)||(47121544-47121625)
chr7 (24-137)||(12930816-12930929)
chr7 (73-144)||(12928315-12928386)
chr7 (79-122)||(47082129-47082172)
chr7 (63-120)||(12929520-12929577)
chr7 (63-144)||(26825667-26825748)
chr7 (63-158)||(12929310-12929405)
chr7 (73-144)||(37563630-37563701)
chr7 (81-139)||(26830025-26830083)
chr7 (79-127)||(5280326-5280374)
chr7 (63-122)||(12928096-12928154)
chr7 (79-137)||(7158275-7158333)
chr7 (74-127)||(25049438-25049491)
chr7 (79-127)||(15828003-15828051)
chr7 (94-158)||(19980190-19980254)
[»] chr1 (52 HSPs)
chr1 (63-158)||(46364841-46364936)
chr1 (22-122)||(2953523-2953623)
chr1 (63-158)||(12577278-12577373)
chr1 (73-144)||(33030611-33030682)
chr1 (21-158)||(739442-739579)
chr1 (21-179)||(26953102-26953261)
chr1 (62-144)||(29043020-29043102)
chr1 (21-158)||(49002899-49003035)
chr1 (63-179)||(6056644-6056762)
chr1 (74-144)||(12577047-12577117)
chr1 (21-144)||(25414881-25415004)
chr1 (21-144)||(37152575-37152698)
chr1 (79-177)||(52455037-52455135)
chr1 (63-179)||(1040299-1040416)
chr1 (63-179)||(1047205-1047322)
chr1 (63-144)||(1047470-1047551)
chr1 (63-181)||(5183505-5183624)
chr1 (63-158)||(19755671-19755766)
chr1 (63-158)||(49003141-49003236)
chr1 (21-144)||(24701307-24701430)
chr1 (74-144)||(37152815-37152885)
chr1 (63-179)||(2953730-2953847)
chr1 (63-127)||(49989849-49989913)
chr1 (63-177)||(29980642-29980757)
chr1 (63-158)||(33347682-33347777)
chr1 (21-179)||(33347417-33347576)
chr1 (21-144)||(46849695-46849818)
chr1 (63-144)||(739256-739337)
chr1 (63-144)||(5926787-5926868)
chr1 (63-144)||(48380949-48381030)
chr1 (63-124)||(51933826-51933887)
chr1 (63-127)||(8890265-8890329)
chr1 (63-158)||(5926542-5926637)
chr1 (71-122)||(6334715-6334766)
chr1 (21-144)||(10019410-10019533)
chr1 (63-158)||(46849924-46850019)
chr1 (63-144)||(5183772-5183853)
chr1 (63-179)||(6056377-6056494)
chr1 (79-179)||(33030335-33030436)
chr1 (63-159)||(29980904-29981000)
chr1 (72-144)||(37152470-37152542)
chr1 (63-118)||(29042818-29042873)
chr1 (73-179)||(46364575-46364682)
chr1 (79-184)||(48380677-48380783)
chr1 (63-145)||(49990062-49990144)
chr1 (79-144)||(10019655-10019720)
chr1 (63-179)||(25415110-25415227)
chr1 (63-144)||(26953367-26953448)
chr1 (79-127)||(46545013-46545061)
chr1 (64-144)||(30830167-30830247)
chr1 (21-53)||(34176051-34176083)
chr1 (66-158)||(52454779-52454870)
[»] chr6 (35 HSPs)
chr6 (21-179)||(21880365-21880524)
chr6 (21-179)||(22494104-22494262)
chr6 (73-158)||(20994967-20995052)
chr6 (71-179)||(30234866-30234975)
chr6 (64-179)||(26503621-26503737)
chr6 (21-179)||(5064336-5064495)
chr6 (21-179)||(13480432-13480591)
chr6 (63-144)||(23291781-23291862)
chr6 (21-138)||(20774305-20774422)
chr6 (63-158)||(3299582-3299677)
chr6 (21-179)||(23291968-23292127)
chr6 (63-179)||(737963-738080)
chr6 (63-144)||(13480245-13480326)
chr6 (63-155)||(7612815-7612907)
chr6 (70-158)||(9607589-9607677)
chr6 (79-181)||(3299841-3299944)
chr6 (63-122)||(5064601-5064660)
chr6 (63-179)||(20560929-20561046)
chr6 (63-144)||(20994856-20994936)
chr6 (21-158)||(3586234-3586371)
chr6 (63-118)||(20561193-20561248)
chr6 (63-158)||(26542886-26542981)
chr6 (73-144)||(32337601-32337672)
chr6 (79-133)||(26503412-26503466)
chr6 (63-179)||(15819756-15819873)
chr6 (63-144)||(22493918-22493998)
chr6 (74-179)||(32337844-32337949)
chr6 (85-156)||(18865145-18865216)
chr6 (79-144)||(26542653-26542719)
chr6 (64-146)||(31393450-31393532)
chr6 (63-144)||(21880630-21880711)
chr6 (74-158)||(19039066-19039150)
chr6 (63-144)||(31879724-31879805)
chr6 (63-167)||(1066152-1066256)
chr6 (81-137)||(17784385-17784441)
[»] chr3 (33 HSPs)
chr3 (21-179)||(10998097-10998256)
chr3 (63-179)||(40257139-40257256)
chr3 (21-179)||(1741388-1741547)
chr3 (63-139)||(24576561-24576637)
chr3 (21-179)||(51279232-51279391)
chr3 (64-158)||(10749663-10749757)
chr3 (73-158)||(21300409-21300494)
chr3 (63-127)||(30804114-30804178)
chr3 (63-155)||(35432616-35432708)
chr3 (63-158)||(40256897-40256992)
chr3 (63-122)||(53037293-53037352)
chr3 (21-124)||(21300190-21300293)
chr3 (74-144)||(30890484-30890554)
chr3 (63-127)||(33458184-33458248)
chr3 (63-127)||(55036935-55036999)
chr3 (64-127)||(10749586-10749649)
chr3 (74-145)||(22129042-22129113)
chr3 (63-158)||(55036692-55036787)
chr3 (63-144)||(11312772-11312853)
chr3 (63-128)||(11313001-11313066)
chr3 (63-179)||(46670249-46670366)
chr3 (63-144)||(53037064-53037145)
chr3 (63-179)||(10997878-10997992)
chr3 (79-158)||(30654762-30654840)
chr3 (79-122)||(33989073-33989116)
chr3 (63-144)||(10749355-10749436)
chr3 (63-144)||(22129275-22129356)
chr3 (79-144)||(30803883-30803948)
chr3 (63-144)||(33989285-33989366)
chr3 (79-127)||(33457970-33458018)
chr3 (79-158)||(24576311-24576392)
chr3 (63-104)||(51279496-51279537)
chr3 (63-127)||(30654538-30654602)
[»] chr2 (36 HSPs)
chr2 (21-179)||(32519379-32519538)
chr2 (63-179)||(1150203-1150320)
chr2 (21-127)||(18476961-18477067)
chr2 (63-158)||(4375817-4375912)
chr2 (63-158)||(20911153-20911248)
chr2 (21-144)||(9693779-9693902)
chr2 (22-144)||(16367000-16367122)
chr2 (24-158)||(37984954-37985088)
chr2 (21-122)||(17366846-17366947)
chr2 (29-158)||(22309454-22309583)
chr2 (63-158)||(8089475-8089570)
chr2 (21-144)||(41846429-41846552)
chr2 (63-158)||(1149960-1150055)
chr2 (73-179)||(32519156-32519263)
chr2 (79-128)||(9959107-9959156)
chr2 (63-144)||(16367229-16367310)
chr2 (63-155)||(28599693-28599785)
chr2 (63-118)||(17580391-17580446)
chr2 (61-144)||(19606954-19607037)
chr2 (73-144)||(22731808-22731879)
chr2 (73-179)||(9958827-9958933)
chr2 (81-158)||(17366649-17366726)
chr2 (21-127)||(20911354-20911459)
chr2 (63-144)||(45663774-45663855)
chr2 (63-127)||(5608646-5608710)
chr2 (79-127)||(41846674-41846722)
chr2 (79-142)||(4375588-4375651)
chr2 (81-144)||(10446869-10446932)
chr2 (23-127)||(8089678-8089780)
chr2 (74-179)||(43681857-43681963)
chr2 (79-144)||(5608876-5608941)
chr2 (63-144)||(11830226-11830307)
chr2 (79-144)||(28599464-28599529)
chr2 (21-122)||(17580552-17580649)
chr2 (65-136)||(19620777-19620848)
chr2 (79-158)||(22309713-22309792)
[»] chr8 (45 HSPs)
chr8 (21-178)||(41801818-41801976)
chr8 (21-144)||(43866935-43867058)
chr8 (63-192)||(40525495-40525625)
chr8 (21-179)||(41182120-41182279)
chr8 (21-127)||(11478369-11478475)
chr8 (73-179)||(11478146-11478253)
chr8 (63-144)||(7659-7740)
chr8 (63-179)||(36623353-36623470)
chr8 (63-139)||(40422202-40422278)
chr8 (63-147)||(40525773-40525857)
chr8 (63-158)||(35163520-35163615)
chr8 (74-144)||(29190436-29190506)
chr8 (63-144)||(25287829-25287910)
chr8 (21-127)||(37342836-37342942)
chr8 (63-128)||(41251392-41251457)
chr8 (63-179)||(547432-547548)
chr8 (64-144)||(22763863-22763943)
chr8 (63-122)||(547701-547760)
chr8 (73-182)||(26739993-26740104)
chr8 (63-158)||(37343048-37343143)
chr8 (70-144)||(38619835-38619909)
chr8 (63-144)||(26739754-26739835)
chr8 (63-144)||(36623619-36623700)
chr8 (63-144)||(43866748-43866829)
chr8 (63-127)||(20096074-20096138)
chr8 (63-127)||(23424566-23424630)
chr8 (63-127)||(27856796-27856860)
chr8 (63-139)||(29190202-29190278)
chr8 (67-127)||(31690166-31690226)
chr8 (63-139)||(41251165-41251241)
chr8 (22-158)||(7416-7552)
chr8 (79-158)||(40422442-40422521)
chr8 (21-144)||(27856966-27857089)
chr8 (63-144)||(23424778-23424859)
chr8 (73-137)||(25288068-25288132)
chr8 (79-155)||(37713722-37713798)
chr8 (63-139)||(41802082-41802158)
chr8 (79-179)||(9632329-9632430)
chr8 (79-187)||(22763588-22763697)
chr8 (79-144)||(31689932-31689997)
chr8 (79-127)||(24529732-24529780)
chr8 (79-122)||(23514080-23514123)
chr8 (79-137)||(38599008-38599066)
chr8 (73-127)||(38600226-38600280)
chr8 (87-127)||(24529946-24529986)
[»] scaffold0321 (2 HSPs)
scaffold0321 (21-179)||(10886-11045)
scaffold0321 (73-158)||(10685-10770)
[»] chr5 (32 HSPs)
chr5 (21-179)||(12991012-12991171)
chr5 (21-179)||(13064633-13064792)
chr5 (73-158)||(6421898-6421983)
chr5 (63-144)||(7015545-7015626)
chr5 (21-127)||(37945218-37945324)
chr5 (63-158)||(14745471-14745566)
chr5 (63-185)||(32052490-32052613)
chr5 (21-144)||(20704937-20705059)
chr5 (21-179)||(32052225-32052384)
chr5 (21-127)||(6421676-6421782)
chr5 (22-144)||(18013837-18013958)
chr5 (66-139)||(27753520-27753593)
chr5 (22-158)||(8323281-8323417)
chr5 (63-158)||(33735579-33735674)
chr5 (79-149)||(27753761-27753831)
chr5 (79-160)||(7015791-7015872)
chr5 (24-179)||(25253313-25253469)
chr5 (24-179)||(25317104-25317260)
chr5 (23-127)||(33735367-33735471)
chr5 (63-144)||(25253123-25253204)
chr5 (63-144)||(25316913-25316994)
chr5 (63-144)||(37945031-37945112)
chr5 (79-182)||(18934711-18934815)
chr5 (73-144)||(14745589-14745660)
chr5 (73-144)||(18013649-18013720)
chr5 (21-160)||(22533411-22533550)
chr5 (63-127)||(18934980-18935044)
chr5 (79-122)||(22024152-22024195)
chr5 (63-157)||(41339378-41339472)
chr5 (74-155)||(20704763-20704844)
chr5 (79-158)||(21260888-21260967)
chr5 (63-137)||(21261129-21261203)
[»] chr4 (37 HSPs)
chr4 (21-179)||(22249734-22249893)
chr4 (21-144)||(50245894-50246017)
chr4 (63-145)||(34238506-34238588)
chr4 (79-179)||(19916938-19917039)
chr4 (63-179)||(33294145-33294262)
chr4 (63-158)||(19916679-19916774)
chr4 (34-145)||(47981873-47981984)
chr4 (63-144)||(54961468-54961549)
chr4 (79-158)||(37678130-37678209)
chr4 (21-179)||(13872070-13872229)
chr4 (21-144)||(20086474-20086597)
chr4 (21-127)||(12691630-12691735)
chr4 (74-158)||(47862175-47862259)
chr4 (63-158)||(37677871-37677966)
chr4 (79-158)||(50246140-50246219)
chr4 (63-117)||(20601212-20601266)
chr4 (21-144)||(53559611-53559734)
chr4 (63-144)||(47862418-47862499)
chr4 (21-127)||(54961655-54961761)
chr4 (63-127)||(13872335-13872399)
chr4 (63-127)||(53559441-53559505)
chr4 (73-144)||(8287209-8287280)
chr4 (74-144)||(22250010-22250080)
chr4 (63-144)||(12691443-12691524)
chr4 (63-144)||(26601342-26601423)
chr4 (63-144)||(33294409-33294490)
chr4 (63-144)||(47980722-47980803)
chr4 (63-144)||(48507683-48507764)
chr4 (63-127)||(27813319-27813383)
chr4 (79-139)||(45199169-45199229)
chr4 (73-127)||(52339249-52339303)
chr4 (79-158)||(8286955-8287034)
chr4 (74-132)||(20086714-20086772)
chr4 (79-137)||(53477078-53477136)
chr4 (79-167)||(27813063-27813151)
chr4 (79-182)||(32846360-32846464)
chr4 (74-122)||(53475890-53475938)
[»] scaffold1493 (2 HSPs)
scaffold1493 (63-144)||(859-940)
scaffold1493 (73-137)||(637-701)
[»] scaffold0201 (2 HSPs)
scaffold0201 (63-144)||(14159-14240)
scaffold0201 (63-125)||(13949-14011)
[»] scaffold0279 (1 HSPs)
scaffold0279 (63-158)||(10876-10971)
[»] scaffold0233 (2 HSPs)
scaffold0233 (79-144)||(8470-8535)
scaffold0233 (74-118)||(8709-8753)
[»] scaffold0206 (1 HSPs)
scaffold0206 (63-144)||(10362-10443)
[»] scaffold0202 (2 HSPs)
scaffold0202 (63-144)||(14500-14581)
scaffold0202 (79-158)||(14258-14337)
[»] scaffold0022 (1 HSPs)
scaffold0022 (79-122)||(120258-120301)
[»] scaffold0009 (1 HSPs)
scaffold0009 (74-137)||(261045-261108)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 20947417 - 20947675
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnn-cttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattag 119  Q
    |||||||||||||||||||||| ||||||||||        ||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  20947417 ggcaccacgtcgttaatgacagcccacctcagcaaaaaaaacttaattatgatcaaaagttaaatgattaatatttacagtggtagattggaaggattag 20947516  T
Q  120 taatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa-acatatttaagctttaaatttatatgaacccgaatgtttatttctatcatg 218  Q
    ||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20947517 taacttcatagatgaaaattcaaataacttatatttgcaagcacaaaagacatatttaagctttaaatttatatgaacccgaatgtttatttctatcatg 20947616  T
Q  219 tataccaaattggagaagattataagtcttacttttgtctattattgtaccagcggtct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20947617 tataccaaattggagaagattataagtcttacttttgtctattattgtaccagcagtct 20947675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 43938052 - 43937895
Alignment:
Q  23 caccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||||||||||||| ||||||||||         ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  43938052 caccacgtcgttaatgacagcccacctcagcaaaaaaatctaattatgaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 43937953  T
Q  123 tttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
     ||||  |||||||||| |||| || | ||||| |||| || ||| ||||||||||||    
T  43937952 cttcagggatgaaaattcaaatgacctatatttacaaggacgaaagacatatttaagc 43937895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 43938160 - 43938277
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| ||||  ||| |||||||||| |    
T  43938160 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcttatatttgcaagga 43938259  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  43938260 cgaaagacatatttaagc 43938277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 47082005 - 47081884
Alignment:
Q  23 caccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||| ||||||||  ||||||||||       | |||||| || ||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  47082005 caccacgtcgctaatgacaacccacctcagcaaaaaaacctaattaagaccaaaaatcaaatgattaatatttacaatggcagattgaaaggattagtaa 47081906  T
Q  123 tttcatagatgaaaatttaaat 144  Q
     |||| ||||||||||| ||||    
T  47081905 cttcagagatgaaaattcaaat 47081884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 26825896 - 26825991
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| || ||||||| |||| || | ||||||||    
T  26825896 taattataaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattaataacttcatggacgaaaattcaaatgacatatatttgca 26825991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 37563514 - 37563355
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  37563514 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattagaaggattagt 37563415  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa-acatatttaagc 179  Q
    || ||||  || ||||||| ||||  | | |||||||| | |||||| ||||||||||||    
T  37563414 aaattcagggacgaaaattcaaatggcctatatttgcagggacaaaagacatatttaagc 37563355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 35262744 - 35262663
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| |||| |||  |||||| ||||    
T  35262744 taattatgatcaaaagtcaaatgattaaattttgcagtggcagattggaaggattagtaacttcagagacaaaaattcaaat 35262663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 34454595 - 34454507
Alignment:
Q  70 gatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||| |||| ||| ||||||| |||| || | ||||||||    
T  34454595 gatcaaaagtcaaatgattaatatttgcaggggtagattggaaggattagtaacttcaaagacgaaaattcaaatgacctatatttgca 34454507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 23191120 - 23191214
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| || || |||| ||||||| | ||||||||    
T  23191120 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaagaattagtaaattcat-gacgataattcaaataacatatatttgca 23191214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 15827829 - 15827758
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| | | ||||||| ||||    
T  15827829 caaaagtcaaatggttaatatttgcagtggcagattgaaaggattaataacttcaaaaacgaaaattcaaat 15827758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 27558118 - 27558213
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| ||||||||||||||||||||||||||||| ||||| | || |||||||||||| ||| | || ||||||| |||| || | ||||||||    
T  27558118 taattaggatcaaaagtcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgca 27558213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 34454756 - 34454827
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||  || ||||||| ||||    
T  34454756 caaaagtcaaatgattaatatttgcaggggcagattgaaagaattagtaacttcagggacgaaaattcaaat 34454827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 5636249 - 5636388
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||| | ||||||||| |||||||| |       | |||||| || |||| ||||||| |||||  ||||||||||||||||| ||||||||||    
T  5636249 ggcaccacgttgctaatgacagcccacctcaactaaaaaacctaattaggaccaaatgtcaaataattaaattttgcagtggcagattggaaggattagt 5636348  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaag 160  Q
    || ||||  || ||||||| |||| |||| ||||||||||    
T  5636349 aacttcagggacgaaaattcaaattacttatatttgcaag 5636388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 5280553 - 5280654
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa-acatatttaa 177  Q
    |||||||||||||||||||| || |||||| ||||||||||||| ||||  || ||||||| |||| || | |||||||||| |||||| || |||||||    
T  5280553 tcaaatgattaatatttgcaatgacagattcaaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaaggacaaaagacctatttaa 5280652  T
Q  178 gc 179  Q
    ||    
T  5280653 gc 5280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 12931004 - 12931085
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  12931004 taattaggaccaaaagtcaaatgattaatatttgcatgggcagattggaaggattagtaacttcagggacgaaaattcaaat 12931085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 20947295 - 20947230
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||||| || ||||||| ||||    
T  20947295 tcaaatgattaatatttgtagtggcagattggaaggattagtaacttcatggacgaaaattcaaat 20947230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 47121544 - 47121625
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||  |||||||||| |||||||||| |||||||| |||| ||| ||||||| ||||    
T  47121544 taattaggaccaaaagtcaaatgattaaattttgcagtggtagattgaaagtattagtaacttcagagacgaaaattcaaat 47121625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 12930929 - 12930816
Alignment:
Q  24 accacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaat 123  Q
    ||||||||| ||||||||| |||||||| |       | |||||| || ||||||||||||||||||||||||||| |||| | || ||||||||||||     
T  12930929 accacgtcgctaatgacagcccacctcaacaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcaaaatggaaggattagtaag 12930830  T
Q  124 ttcatagatgaaaa 137  Q
    ||||  ||||||||    
T  12930829 ttcagggatgaaaa 12930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 12928315 - 12928386
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||  || ||||||| ||||    
T  12928315 caaaagtcaaatgattgatatttgcagcggcagattaaaaggattagtaacttcaaggacgaaaattcaaat 12928386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 47082129 - 47082172
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  47082129 tcaaatgattaatatttgtagtggcagattgaaaggattagtaa 47082172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 12929520 - 12929577
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  12929520 taattaggaccaaaagtcaaatgattaatatttgcacgggcagattggaaggattagt 12929577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 26825748 - 26825667
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||| ||||||| ||||||||| || ||||||||| ||||  || ||||||| ||||    
T  26825748 taattaagaccaaaagtcaaatgattaatctttgcaggggcagattggaatgattagtaacttcagggacgaaaattcaaat 26825667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 12929405 - 12929310
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| |||| | ||  ||||||||||| ||||  |||||||| | ||||| | | ||||||||    
T  12929405 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatagcctatatttgca 12929310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 37563630 - 37563701
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||| ||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  37563630 caaaagtcaaaagattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaat 37563701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 26830025 - 26830083
Alignment:
Q  81 aaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||||||||||||||||||||| | || |||||||||||| |||||  |||||||||    
T  26830025 aaatgattaatatttgcagtggcaaaatggaaggattagtaacttcatgaatgaaaatt 26830083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 5280374 - 5280326
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  5280374 tcaaattattaatatttacagtggcagattggaaggattagtaacttca 5280326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 12928154 - 12928096
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||| || |||| |||||||||||||||| |||| |||||||||| ||||||||||||    
T  12928154 taattaggaccaaatgtcaaatgattaatatatgca-tggcagattggaaggattagtaa 12928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 7158333 - 7158275
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||| ||| |||| | || |||||||||||| ||||| ||||||||    
T  7158333 tcaaatgattaatatttacaggggcaaaatggaaggattagtaagttcatggatgaaaa 7158275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 25049438 - 25049491
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||||||||||||||  |||||||||||| |||| || ||||||||| ||||    
T  25049438 aaaagtcaaatgattaaattttgcagtggcatattggaaagattagtaacttca 25049491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 15828003 - 15828051
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||||||||||||||||||||||| |||| ||  |||| ||||||||    
T  15828003 tcaaatgattaatatttgcagtggcaaattggaataattattaatttca 15828051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 19980190 - 19980254
Alignment:
Q  94 ttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||| ||||||||| ||||  ||  |||||| |||| |||| ||||||||    
T  19980190 ttgcagtggcagattgaaatgattagtaacttcaaggacaaaaattcaaatgacttatatttgca 19980254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 46364841 - 46364936
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||||||| ||||||||| ||||||||    
T  46364841 taattaggatcaaaagtcaaatgattaatatttgcaggggcatattgaaaggattagtaatttcaaggacgaaaattcaaataacttatatttgca 46364936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 2953623 - 2953523
Alignment:
Q  22 gcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    ||||||||||||||||||||| ||||||||||         ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2953623 gcaccacgtcgttaatgacagcccacctcagcaaaaaaatctaattatgaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagta 2953524  T
Q  122 a 122  Q
    |    
T  2953523 a 2953523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 12577278 - 12577373
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  || |||||||||||| |||| ||||||||    
T  12577278 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcaaggacgaaaatttaaatgacttatatttgca 12577373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 33030611 - 33030682
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  33030611 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatggacgaaaattcaaat 33030682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 739442 - 739579
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||||  |||||||||       | |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  739442 ggcaccacgtcgctaatgacagctcacctcagcaaaaaaacctaattaggatcaaaagtcaaatgattaatatttgcagggacagattgaaaggattagt 739541  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgca 158  Q
    || |||||  | ||||||| |||| || | ||||||||    
T  739542 aacttcatgtacgaaaattcaaatgacctatatttgca 739579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 26953261 - 26953102
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||| ||||||         |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26953261 ggcaccacgtcgctaatgacagcccagctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagt 26953162  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||||   | |||||||||| || ||| ||||||||||||    
T  26953161 aacttcagggacgaaaattcaaatagtctatatttgcaaggacgaaagacatatttaagc 26953102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 29043020 - 29043102
Alignment:
Q  62 ttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  || ||||||| ||||    
T  29043020 ttaattaggatcaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcagggacgaaaattcaaat 29043102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 49003035 - 49002899
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| |||||||| |       || ||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  49003035 ggcaccacgtcgctaatgacagcccacctcaacaaaaaacct-aattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 49002937  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgca 158  Q
    || ||||| || ||||||| |||| || | ||||||||    
T  49002936 aacttcatggacgaaaattcaaatgacctatatttgca 49002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 6056644 - 6056762
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa-tttcatagatgaaaatttaaataacttttatttgcaagc 161  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| || ||  |||||||||| ||||  ||| |||||||| |     
T  6056644 taattatgaccaaatgtcaaatgattaatatttgcaggggcagattgaaaggattagtaacttacagggatgaaaattcaaatggcttatatttgcaggg 6056743  T
Q  162 ac-aaaaacatatttaagc 179  Q
    || ||| ||||||||||||    
T  6056744 acgaaagacatatttaagc 6056762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 12577117 - 12577047
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||| ||||    
T  12577117 aaaagtcaaatgattaatatttgcaggggcagattgaaatgattagtaacttcatagacgaaaattcaaat 12577047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 25415004 - 25414881
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||   |||||||||       | |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  25415004 ggcaccacgtcgctaatgacaactcacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 25414905  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || |||| ||| ||||||| ||||    
T  25414904 aacttcagagaagaaaattcaaat 25414881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 37152698 - 37152575
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| |||||||||||||||||||| ||||||||  ||||||||| ||||||||||    
T  37152698 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggatcaaaagtcaaatgattagtatttgcacgggcagattggaaggattagt 37152599  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||| || ||||||| ||||    
T  37152598 aacttcatggacgaaaattcaaat 37152575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 52455037 - 52455135
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaaacatatttaa 177  Q
    |||||||||||||| |||||||||||||||| |||||||| ||| || || || ||||||||||||||||| |||||||| | |||||||  |||||||    
T  52455037 tcaaatgattaatagttgcagtggcagattggaaggattaataactttatggacgaaaatttaaataacttatatttgcatggacaaaaaactatttaa 52455135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 1040416 - 1040299
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  ||  |||||| ||||  ||| |||||||||| |    
T  1040416 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaatggcttatatttgcaagga 1040317  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  1040316 cgaaagacatatttaagc 1040299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 1047322 - 1047205
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  ||  |||||| ||||  ||| |||||||||| |    
T  1047322 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaatggcttatatttgcaagga 1047223  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  1047222 cgaaagacatatttaagc 1047205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 1047470 - 1047551
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||| ||||    
T  1047470 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaat 1047551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 5183624 - 5183505
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| || || || ||||||| |||| || | ||||| || | |    
T  5183624 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaactttatggacgaaaattcaaatgacctatattttcaggaa 5183525  T
Q  163 c-aaaaacatatttaagctt 181  Q
    | ||| ||||||||||||||    
T  5183524 cgaaagacatatttaagctt 5183505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 19755671 - 19755766
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  ||| |||||| |||| || | ||||||||    
T  19755671 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggataaaaattcaaatgacctatatttgca 19755766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 49003141 - 49003236
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||| || ||||||| |||| || | ||||||||    
T  49003141 taattaggaccaaaaatcaaatgattaatatttgcagaggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgca 49003236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 24701430 - 24701307
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       | |||||| || ||||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  24701430 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaacctaattaggaccaaaagttaaatgattaaattttgcagtggcagattggaaggattagt 24701331  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  24701330 aacttcagggacgaaaattcaaat 24701307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 37152815 - 37152885
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||| ||||    
T  37152815 aaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaat 37152885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 2953730 - 2953847
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | |    
T  2953730 taattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaggga 2953829  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  2953830 cgaaagacatatttaagc 2953847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 49989913 - 49989849
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  49989913 taattaggaccaaaagtcaaatgattaatatttgcagaggcagattgaaaggattaataacttca 49989849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 29980757 - 29980642
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| |  ||||||| |||| || | ||||| |||| |    
T  29980757 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaagattagtaacttcatgggcgaaaattcaaatgacctatatttacaagga 29980658  T
Q  163 c-aaaaacatatttaa 177  Q
    | ||| ||||||||||    
T  29980657 cgaaagacatatttaa 29980642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 33347682 - 33347777
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  33347682 taattaggaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgca 33347777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 33347576 - 33347417
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||| ||| ||||||||| |||||||| |       | |||||| || |||||||||||||||||||||||| || ||||||||| ||| ||||||    
T  33347576 ggcaccacatcgctaatgacagcccacctcaacaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgtaggggcagattggaagaattagt 33347477  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || |||| || |||| |||| |||||||| | || ||| ||||||||||||    
T  33347476 aacttcagggacgaaagttcaaatgacttatatttgcagggacgaaagacatatttaagc 33347417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 46849818 - 46849695
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||| || ||||||||||       | ||||||||| |||||||||||||| |||||||| ||| ||||||||||||| |||| |    
T  46849818 ggcaccacgtcgctaatgatagcccacctcagcaaaaaaacctaattatgaccaaaagtcaaatgactaatatttacaggggcagattgaaagaattaat 46849719  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  46849718 aacttcagggacgaaaattcaaat 46849695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 739337 - 739256
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  739337 taattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcaaggacgaaaattcaaat 739256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 5926787 - 5926868
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||| | |||||||||| ||||  |||||||||| ||||    
T  5926787 taattaggaccaaaagtcaaatgattactatttgcagaggcagattggacggattagtaacttcagggatgaaaattcaaat 5926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 48380949 - 48381030
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||| ||| || |  || ||||||||||||    
T  48380949 taattaggaccaaaagtcaaatgattaatatttgcagcggcagattggaaggattaataactttaaggacgaaaatttaaat 48381030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 51933887 - 51933826
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatt 124  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||| |||| ||||||||||    
T  51933887 taattatgaccaaaagacaaatgattaatatttacagtggcagattaaaagaattagtaatt 51933826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 8890329 - 8890265
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || |||||||||||||||||||||||| |||||||||||| || ||||||||| ||||    
T  8890329 taattacgaccaaaagtcaaatgattaatatttggagtggcagattggaaagattagtaacttca 8890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 5926637 - 5926542
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||| ||||||| |||| |||| |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  5926637 taattaagaccaaaagtcaaatgattaatgtttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 5926542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 6334766 - 6334715
Alignment:
Q  71 atcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  6334766 atcaaaagccaaatgattaatatttgcagtggcagatcggaaggattagtaa 6334715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 10019533 - 10019410
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnn-cttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattag 119  Q
    |||||||||||| ||||||||| ||||||||||        | |||||| |||||||||||||||||||||  |||||| | | |||||| |||||||||    
T  10019533 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaaacctaattaggatcaaaagtcaaatgattaaattttgcaatagtagattggaaggattag 10019434  T
Q  120 taatttcatagatgaaaatttaaat 144  Q
    ||| ||||  |||||||||||||||    
T  10019433 taacttca-ggatgaaaatttaaat 10019410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 46849924 - 46850019
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||| ||||| ||||  || ||||||| |||| || | ||||||||    
T  46849924 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggatcagtaacttcagggacgaaaattcaaatgacctatatttgca 46850019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 5183772 - 5183853
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| ||||||| |||| ||||  || ||||||| ||||    
T  5183772 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattcgtaacttcagggacgaaaattcaaat 5183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 6056494 - 6056377
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| | || |||| |||||| |||||||| |  || ||||||| |||| || | |||||||| | |    
T  6056494 taattaggaccaaaagtcaaatgattaatatttgcagggacatattggaaggatcagtaattttagggacgaaaattcaaatgacctatatttgcaggga 6056395  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  6056394 cgaaagacatatttaagc 6056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 33030436 - 33030335
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa-acatatttaa 177  Q
    |||||||||| |||||||||||||||||||| ||| |||||||| ||||  || ||||||| |||| || | |||||||| | |||||| || |||||||    
T  33030436 tcaaatgattcatatttgcagtggcagattggaagaattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacaaaagacctatttaa 33030337  T
Q  178 gc 179  Q
    ||    
T  33030336 gc 33030335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 29980904 - 29981000
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaa 159  Q
    |||||| || ||||| ||||||||||||||||||||| |||| |||| |||||||||||| |||   || ||||||| |||| || | |||||||||    
T  29980904 taattaggaccaaaaatcaaatgattaatatttgcaggggcaaattggaaggattagtaacttccgggacgaaaattcaaatgacctatatttgcaa 29981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 37152542 - 37152470
Alignment:
Q  72 tcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||| ||||||||  |||| |||| |||||||||||| ||||| || ||||||| ||||    
T  37152542 tcaaaagtcaaatgattagtatttgcaagggcatattggaaggattagtaacttcatggacgaaaattcaaat 37152470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 29042873 - 29042818
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggatta 118  Q
    ||||||||| ||||| ||||||||||||||||||||| | ||||||| ||||||||    
T  29042873 taattatgaccaaaaatcaaatgattaatatttgcagggacagattggaaggatta 29042818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 46364682 - 46364575
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacat 171  Q
    |||||||||||||||||||||||| || | ||||| |||| ||||||||| ||||  || ||||||| |||| || | |||||||| | || ||| ||||    
T  46364682 caaaagtcaaatgattaatatttgtagggacagatggaaaagattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacat 46364583  T
Q  172 atttaagc 179  Q
    ||||||||    
T  46364582 atttaagc 46364575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 48380783 - 48380677
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaa 177  Q
    ||||||||||||| |||||| |||||||||| |||||||||||| ||||  || ||||||| |||| || | ||||| |||| || ||| || |||||||    
T  48380783 tcaaatgattaatttttgcactggcagattggaaggattagtaacttcagcgacgaaaattcaaatgacctatatttacaaggacgaaagacctatttaa 48380684  T
Q  178 gctttaa 184  Q
    || ||||    
T  48380683 gccttaa 48380677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 49990062 - 49990144
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaata 145  Q
    |||||| || |||||||||||||||||||||||| || || |||||  |||||||| ||| |||| ||| ||||||| |||||    
T  49990062 taattaagaccaaaagtcaaatgattaatatttgtaggggtagatttgaaggattaataacttcaaagacgaaaattcaaata 49990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 10019655 - 10019720
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||| ||||| | || |||||||||||| ||||  |||||||||| ||||    
T  10019655 tcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggatgaaaattcaaat 10019720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 25415110 - 25415227
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||| |||||||||||||   || |||| |||||||||||| ||||   | ||||||| |||| |||| |||||||| | |    
T  25415110 taattaggaccaaaagtcaaatggttaatatttgcaggaacatattggaaggattagtaacttcaggaacgaaaattcaaatgacttatatttgcaggga 25415209  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||||| ||||||||||    
T  25415210 cgaaaaatatatttaagc 25415227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 26953367 - 26953448
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||   |||||||| ||| |||||||| ||||   ||||||||| ||||    
T  26953367 taattaggaccaaaagtcaaatgattaatatttgcaagagcagattggaagaattagtaacttcaggaatgaaaattcaaat 26953448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 46545013 - 46545061
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||||    
T  46545013 tcaaatgattaatatttgcagtggcaaaatggaaggattagtaacttca 46545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 30830247 - 30830167
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||| |||||||| ||||||||||||  ||||| ||||||||||| || ||||| ||| ||||  || ||||||| ||||    
T  30830247 aattaggatcaaaattcaaatgattaaattttgcggtggcagattggaatgattattaacttcagggacgaaaattcaaat 30830167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 34176083 - 34176051
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagc 53  Q
    |||||||||||| ||||||||||||||||||||    
T  34176083 ggcaccacgtcgctaatgacagtccacctcagc 34176051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 52454870 - 52454779
Alignment:
Q  66 ttatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||| |||||||||||||||||||||||| || ||||  ||| ||||| || ||||| | |||| || | ||||||||    
T  52454870 ttatgaccagaagtcaaat-attaatatttgcagtggcagattggaatgattgataacttcatggacgaaaagtcaaatgacctatatttgca 52454779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 21880524 - 21880365
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       | ||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21880524 ggcaccacgtcggtaatgacagcccacctcagcaaaaaaacctaattagtaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagt 21880425  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || |||| ||| ||||||| |||| |||| ||||| || | || ||| ||||||||||||    
T  21880424 aacttcagagacgaaaattcaaatgacttatatttacaggaacgaaagacatatttaagc 21880365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 22494104 - 22494262
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||| || | ||||||||||||||||||||       |  ||||| || |||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  22494104 ggcaccatgttgctaatgacagtccacctcagcaaaaaaacccaattaggaccaaaagtcaaatgattgatatttgcaggggcagattggaaggattagt 22494203  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcacaaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | |||||||| | ||||||||||||||||||    
T  22494204 aacttcaaggacgaaaattcaaatgacctatatttgcagggacaaaaacatatttaagc 22494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 20994967 - 20995052
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  |||||||||| |||| |||| ||||||||    
T  20994967 caaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacttctatttgca 20995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 30234866 - 30234975
Alignment:
Q  71 atcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaac 169  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  |||||||||| ||| ||| | |||||||| | || ||| ||    
T  30234866 atcaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaacaacctatatttgcagggacgaaagac 30234965  T
Q  170 atatttaagc 179  Q
    ||||||||||    
T  30234966 atatttaagc 30234975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 26503621 - 26503737
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac 163  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| || ||||||| |||| |||| |||||||| | ||    
T  26503621 aattaggaccaaaagtcaaatgattaatatttgcagtggcggattggaaggattaataacttcatggacgaaaattcaaatgacttatatttgcagggac 26503720  T
Q  164 -aaaaacatatttaagc 179  Q
     |||||| |||||||||    
T  26503721 gaaaaacctatttaagc 26503737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 5064495 - 5064336
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||||||||||||||         |||||| || ||||||||||||||||||||||||||| |||| ||||  |||||||||    
T  5064495 ggcaccacgtcgctaatgacagtccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattgggaggattagt 5064396  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| |||| ||||| || | || ||| ||||||||||||    
T  5064395 aacttcagggacgaaaattcaaatgacttatatttacagggacgaaagacatatttaagc 5064336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 13480432 - 13480591
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| || |||||||||||||||||||||||| || ||||||||| ||||||||||    
T  13480432 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgtaggggcagattggaaggattagt 13480531  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | ||||| |||| || ||| ||||||||||||    
T  13480532 aacttcagggacgaaaattcaaatgacctatatttacaaggacgaaagacatatttaagc 13480591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 23291862 - 23291781
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  |||||||||| ||||    
T  23291862 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaat 23291781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 20774305 - 20774422
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||| ||||||         ||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  20774305 ggcaccacgtcgctaatgacagcccaactcagcataaaaatctaattatgaccaaaagtcaaatgattaaattttgcagtggcagattgaaagaattagt 20774404  T
Q  121 aatttcatagatgaaaat 138  Q
    || |||| ||| ||||||    
T  20774405 aacttcagagacgaaaat 20774422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 3299677 - 3299582
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| |||||||||| |||||||||||||||||| ||||| |||| || ||||||||| ||||| || ||||||| |||| |||| ||||||||    
T  3299677 taattaggatcaaaagtgaaatgattaatatttgcaatggcaaattggaatgattagtaacttcatggacgaaaattcaaatgacttatatttgca 3299582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 23291968 - 23292127
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||||  ||| |||||       | |||||| |||||||||||||||||||||||||||||| |  |||||| ||||||||||    
T  23291968 ggcaccacgtcgctaatgacagctcacttcagcaaaaaaacctaattaggatcaaaagtcaaatgattaatatttgcagggatagattggaaggattagt 23292067  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  23292068 aacttcagggacgaaaattcaaatgacctatatttgcatggacgaaagacatatttaagc 23292127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 737963 - 738080
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || |||||||||||||||||||| ||| || ||||||||| |||||||||||| ||||| || ||||||| |||| || | |||||||| | |    
T  737963 taattaggaccaaaagtcaaatgattaatacttgaaggggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcaggga 738062  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  738063 cgaaagacatatttaagc 738080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 13480326 - 13480245
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  13480326 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaat 13480245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 7612815 - 7612907
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttattt 155  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||| || |||| |||||||||  || ||||||| ||||| ||| |||||    
T  7612815 taattatgaccaaaagtcaaatgattaaattttgcagtggcagattggaaagattggtaatttcagggacgaaaattcaaatagcttatattt 7612907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 9607589 - 9607677
Alignment:
Q  70 gatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||||||||||||||||| |||| |||  |||||||||||| ||||| || ||||||| |||| || | ||||||||    
T  9607589 gatcaaaagtcaaatgattaatatttgcaggggcatattagaaggattagtaacttcatggacgaaaattcaaatgacctatatttgca 9607677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 3299841 - 3299944
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaa 177  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||    
T  3299841 tcaaatgattaatatttgcaatggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagggacgaaatacatatttaa 3299940  T
Q  178 gctt 181  Q
    ||||    
T  3299941 gctt 3299944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 5064601 - 5064660
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  5064601 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 5064660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 20561046 - 20560929
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||||| ||||| ||| | ||  || ||||||| |||| || | |||||||| | |    
T  20561046 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaatgattaataactacagggacgaaaattcaaatgacctatatttgcaggga 20560947  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  20560946 cgaaagacatatttaagc 20560929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 20994936 - 20994856
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||  |||||||||||| |||| ||| ||||||| ||||    
T  20994936 taattatgaccaaaagttaaatgattaatatttgcag-ggcagattagaaggattagtaacttcagagacgaaaattcaaat 20994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 3586371 - 3586234
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||||||||||| |||       | |||||| || || |||||||||||||||  ||||||||||||||||  |||||||||     
T  3586371 ggcaccacgtcgctaatgacagtccaccttagcgaaaaaacctaattaagaccagaagtcaaatgattaaattttgcagtggcagatttgaaggattagc 3586272  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgca 158  Q
    || || | ||| ||||||| |||| || | ||||||||    
T  3586271 aactttagagacgaaaattcaaatgacctatatttgca 3586234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 20561193 - 20561248
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggatta 118  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  20561193 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggatta 20561248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 26542886 - 26542981
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||| ||||| ||||||||  |||||||| |||| ||| ||||| | |||| || | ||||||||    
T  26542886 taattaggaccaaaagtcaaatgattaatatttgcggtggccgattgaaattattagtaacttcagagacgaaaactcaaatgacctatatttgca 26542981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 32337672 - 32337601
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  32337672 caaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaat 32337601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 26503466 - 26503412
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatg 133  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  26503466 tcaaatgatttatatttgcagtggtagattgaaaggattagtaacttcatggatg 26503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 15819756 - 15819873
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||| ||||||||  || |||||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | |    
T  15819756 taattaggaccaaaagtcaaatgattagtatttgcaagggtagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaggga 15819855  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  15819856 cgaaagacatatttaagc 15819873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 22493998 - 22493918
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| || ||||||||| ||||||||| ||||  || ||||||| ||||    
T  22493998 taattaggaccaaaagtcaaatgattaatatttgcag-ggtagattgaaaagattagtaacttcagggacgaaaattcaaat 22493918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 32337844 - 32337949
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaaacatat 173  Q
    |||||||||||||||||||||||||| |||| |||| |||||| ||||| ||||  || ||||||| |||| || | |||||||| |   ||| ||||||    
T  32337844 aaaagtcaaatgattaatatttgcaggggcatattggaaggatcagtaacttcagggacgaaaattcaaatgacctatatttgcaggacgaaagacatat 32337943  T
Q  174 ttaagc 179  Q
    ||||||    
T  32337944 ttaagc 32337949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 18865216 - 18865145
Alignment:
Q  85 gattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttg 156  Q
    ||||||||||||||||||||  ||| |||||||||||| || ||||| ||||||| |||| |||| ||||||    
T  18865216 gattaatatttgcagtggcaatttggaaggattagtaactttatagacgaaaattcaaatgacttgtatttg 18865145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 26542719 - 26542653
Alignment:
Q  79 tcaaatgattaa-tatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||  || ||||||| ||||    
T  26542719 tcaaatgattaaatatttgcagtggcagattgaaatgattagtaacttcagggacgaaaattcaaat 26542653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 31393450 - 31393532
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataa 146  Q
    ||||| || ||||||||||||||||||  ||||| |||||| |||| ||| |||||||| |||||  ||||||||| ||||||    
T  31393450 aattaggaccaaaagtcaaatgattaaattttgcggtggcatattggaagaattagtaacttcatgaatgaaaattgaaataa 31393532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 21880630 - 21880711
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||| ||||||||||||| |  |||||| |||||||||||| ||||  || ||||||| ||||    
T  21880630 taattaggaccaaaagtcaaatgcttaatatttgcagggatagattggaaggattagtaacttcagggacgaaaattcaaat 21880711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 19039066 - 19039150
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||| || ||||||||||||||| ||| |||||| ||||||||| |||| ||   |||||| ||||||| | ||||||||    
T  19039066 aaaagtcaagtgtttaatatttgcagtgccagtttgaaatgattagtaacttcaaagtataaaattcaaataacctatatttgca 19039150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 31879724 - 31879805
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||| ||||||||||||||||||  ||||||||  ||||||| ||  |||||||| ||||  |||| ||||| ||||    
T  31879724 taattatgaccaaaagtcaaatgattaaattttgcagtaacagattggaattattagtaacttcagggatgcaaattcaaat 31879805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 1066256 - 1066152
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||| |||||| |||||  ||||||||| |||||||||||||||| ||| || |  || ||||||| |||| || | ||||| |||| |    
T  1066256 taattaggaccaaaattcaaattattaaattttgcagtgacagattgaaaggattaataactttaaggacgaaaattcaaatgacctatatttacaagga 1066157  T
Q  163 caaaa 167  Q
    |||||    
T  1066156 caaaa 1066152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 17784385 - 17784441
Alignment:
Q  81 aaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||||| |||| | ||  ||||||||||| ||||| ||||||||    
T  17784385 aaatgattaatatttgcaggggcaaaatgggaggattagtaagttcatggatgaaaa 17784441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 10998097 - 10998256
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||        |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10998097 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatttaattatgaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 10998196  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgca-agcacaaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | |||||||| ||   ||||||||||||||||    
T  10998197 aacttcagggacgaaaattcaaatgacctatatttgcagagacgaaaaacatatttaagc 10998256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 40257139 - 40257256
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  || ||||||| ||||||||| |||||  | | |    
T  40257139 taattaggatcaaaagtcaaatgattaatatttgcaggggcagattgaaatgattagtaatttcagggacgaaaattcaaataacttatatttataggga 40257238  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||||||||||||||||    
T  40257239 cgaaaaacatatttaagc 40257256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 1741547 - 1741388
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       | |||||| || ||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  1741547 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagt 1741448  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  1741447 aacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 1741388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 24576561 - 24576637
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||| || ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||    
T  24576561 taattaggaccaaaattcaaatgattaatatttgcactggcagattggaaggattagtaatttcaaagatgaaaatt 24576637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 51279391 - 51279232
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||||||||||| ||       | |||||| ||  |||||||||||||||||||||||||| |||| ||||||| |||||||    
T  51279391 ggcaccacgtcgctaatgacagtccacctcggcaaaaaaacctaattaggactaaaagtcaaatgattaatatttgcaggggcaaattgaaatgattagt 51279292  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || |||   || ||||||| ||||||| | |||||||| | || ||| ||||||||||||    
T  51279291 aacttctgggacgaaaattcaaataacctatatttgcagggacgaaagacatatttaagc 51279232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 10749663 - 10749757
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||| || ||||||||| ||||  || |||||||||||| || | ||||||||    
T  10749663 aattatgaccaaaagtcaaatgattaatatttgctgaggcagattggaaagattagtaacttcagggacgaaaatttaaatgacctatatttgca 10749757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 21300409 - 21300494
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||||||| |||| ||| ||||||| ||||||| | ||||||||    
T  21300409 caaaagtcaaatgattaatatttacagggacagactgaaaggattagtaacttcagagacgaaaattcaaataacatatatttgca 21300494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 30804114 - 30804178
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  30804114 taattaggaccaaaagtcaaatgattaatatttgcagtgacagattggaaggattagtaacttca 30804178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 35432616 - 35432708
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttattt 155  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||| |||||||| ||| || ||  | ||||||| ||||||||| |||||    
T  35432616 taattatgacaaaaagtcaaataattaatatttgcagtggcagattggaaggattaataactttatgaacgaaaattcaaataacttatattt 35432708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 40256992 - 40256897
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||  |||| |||| |||||||||||| ||||  || ||||||| ||||||| | ||||||||    
T  40256992 taattaggaccaaaagtcaaatgattaatatttgcaagggcatattggaaggattagtaacttcagggacgaaaattcaaataacctatatttgca 40256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 53037293 - 53037352
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  53037293 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggatcagtaa 53037352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 21300293 - 21300190
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||| ||| ||||||||||||||||||||       | |||||| ||  |||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  21300293 ggcaccacatcgctaatgacagtccacctcagcaaaaaaacctaattaggacaaaaaatcaaatgattaatatttgcatgggcagatagaaaggattagt 21300194  T
Q  121 aatt 124  Q
    ||||    
T  21300193 aatt 21300190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 30890484 - 30890554
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||| ||||  |||||||||| ||||    
T  30890484 aaaagtcaaatgattaaattttgcagtggcagattgaaaagattagtaacttcagggatgaaaattcaaat 30890554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 33458184 - 33458248
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||    
T  33458184 taattaggaccaaaagtcaaatgattaatatttgcagtgacagattagaaggattagtaacttca 33458248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 55036935 - 55036999
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  55036935 taattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagtaacttca 55036999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 10749586 - 10749649
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||| || ||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||    
T  10749586 aattaggaccaaaagtcaaatgattaatatttgctggggcagattggaaggattagtaacttca 10749649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 22129113 - 22129042
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaata 145  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| |||||    
T  22129113 aaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagtgacgaaaattcaaata 22129042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 55036787 - 55036692
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || |||| || ||||||||||||||||||| ||||||||| |||||||||||| ||||   ||||||||| |||| || | ||||||||    
T  55036787 taattaggaccaaaggttaaatgattaatatttgcaggggcagattggaaggattagtaacttcaggaatgaaaattcaaatgacctatatttgca 55036692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 11312853 - 11312772
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||||| || ||||||| |||| ||||  || ||||||| ||||    
T  11312853 taattaggaccaaaagtcaaatgattaatatttgcaggggcagactgcaaggattggtaacttcagggacgaaaattcaaat 11312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 11313001 - 11313066
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcat 128  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||  |||||||||||| |||||    
T  11313001 taattaggaccaaaagtcaaatgattagtatttgcaggggcagattagaaggattagtaacttcat 11313066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 46670366 - 46670249
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||  |||||||||| |||||| |||||||||||| ||||  || | ||||| |||| || | |||||||| | |    
T  46670366 taattaggaccaaaagtcaaatgattaaattttgcagtggtagattggaaggattagtaaattcaaggacggaaattcaaatgacctatatttgcaggga 46670267  T
Q  163 caaaa-acatatttaagc 179  Q
    ||||| || |||||||||    
T  46670266 caaaagacttatttaagc 46670249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 53037145 - 53037064
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||| ||||||||| |||||||||||| || | |||| |||||||||||| ||||  || ||||||| ||||    
T  53037145 taattatgatcaaatgtcaaatgactaatatttgcaggggtatattggaaggattagtaacttcagggacgaaaattcaaat 53037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 10997992 - 10997878
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| |||||||||||||||||||||||||| ||| |    |||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | |    
T  10997992 taattaggatcaaaagtcaaatgattaatatttacaggg---aattggaaggattagtaacttcagggacgaaaattcaaatgacctgtatttgcaggaa 10997896  T
Q  163 caaaa-acatatttaagc 179  Q
    ||||| ||||||||||||    
T  10997895 caaaatacatatttaagc 10997878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 30654762 - 30654840
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||| |||||||||||||  |||||| ||||| |||||||| ||||||| |||| || | ||||||||    
T  30654762 tcaaatgattaatatt-gcagtggcagattagaaggatcagtaacttcatagacgaaaattcaaatgacctatatttgca 30654840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 33989116 - 33989073
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  33989116 tcaaataattaatatttgcagtggcagattggaaggattagtaa 33989073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 10749436 - 10749355
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |  |||||  |||||||||||| ||||  || ||||||| ||||    
T  10749436 taattaggaccaaaagtcaaatgattaatatttgcagggatagattagaaggattagtaacttcagggacgaaaattcaaat 10749355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 22129275 - 22129356
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || |||||||||||| |||||||||||||| |||| |||  |||||||||||| ||||  || ||||||| ||||    
T  22129275 taattaggaccaaaagtcaaattattaatatttgcagaggcaaatttgaaggattagtaacttcagggacgaaaattcaaat 22129356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 30803948 - 30803883
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||| |||||||||||||||||| ||||||| ||| |||||||| |||| ||| ||||||| ||||    
T  30803948 tcaattgattaatatttgcagtgacagattggaagaattagtaacttcagagacgaaaattcaaat 30803883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 33989285 - 33989366
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||| || |||| || |||| |||||||| ||| ||||| || ||||||| ||||    
T  33989285 taattaggaccaaaagtcaaatgattaatatctgtagtgacaaattggaaggattactaacttcatggacgaaaattcaaat 33989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 33458018 - 33457970
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||||||||||||||||||||| || ||| ||||||||||||| ||||    
T  33458018 tcaaatgattaatatttgcagtgacatattaaaaggattagtaacttca 33457970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 24576392 - 24576311
Alignment:
Q  79 tcaaatgattaatattt--gcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||| |||  ||||| |||||||  |||||||||||||||||| || ||||||| ||||  ||| ||||||||    
T  24576392 tcaaatgattaatttttttgcagttgcagattagaaggattagtaatttcatggacgaaaattcaaatggcttatatttgca 24576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 51279496 - 51279537
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggca 104  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||    
T  51279496 taattatgaccaaaagtcaaatgattaatatttacaggggca 51279537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 30654602 - 30654538
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || |||||||||||| |||||||||| |||| |||||||| ||  |||||||| ||||    
T  30654602 taattaggaccaaaagtcaaattattaatatttacagtagcagattggaaatattagtaacttca 30654538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 32519379 - 32519538
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       | |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32519379 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagt 32519478  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||   | ||||||| |||| |||| |||||||| | || ||| ||||||||||||    
T  32519479 aacttcaggaacgaaaattcaaatgacttatatttgcagggacgaaagacatatttaagc 32519538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 1150203 - 1150320
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||||| |||| || | |||||||| |||    
T  1150203 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaatttcagggacgaaaattcaaatgacctatatttgcaggca 1150302  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||| ||||||||||||    
T  1150303 cgaaagacatatttaagc 1150320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 18477067 - 18476961
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||| |||||||||||||| ||||||||||       | |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  18477067 ggcaccatgtcgttaatgacagcccacctcagcaaaaaaacctaattaggatcaaaagtcaaatgattaaattttgcagtggcagattggaaggattagt 18476968  T
Q  121 aatttca 127  Q
    || ||||    
T  18476967 aacttca 18476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 4375817 - 4375912
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||| || |||||||||||| || | ||||||||    
T  4375817 taattaggaccaaaagtcaaatgattaaattttgcagtggcagattggaaggattagtaacttcatggacgaaaatttaaatgacatatatttgca 4375912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 20911248 - 20911153
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  20911248 taattatgaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 20911153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 9693902 - 9693779
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       | |||||| || ||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  9693902 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaaactttgcagtggcagattggaaggattagt 9693803  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  9693802 aacttcagtgacgaaaattaaaat 9693779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 16367122 - 16367000
Alignment:
Q  22 gcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    ||||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  16367122 gcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagta 16367023  T
Q  122 atttcatagatgaaaatttaaat 144  Q
    | ||||  || ||||||| ||||    
T  16367022 acttcagggacgaaaattcaaat 16367000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 37984954 - 37985088
Alignment:
Q  24 accacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaat 123  Q
    ||||||| | ||||||||| ||||||||||       | |||||| |||||||||||||||||||||  |||||||||||| |||| |||||||||||||    
T  37984954 accacgttgctaatgacagcccacctcagcaaaaaaacctaattaagatcaaaagtcaaatgattaaattttgcagtggcaaattggaaggattagtaat 37985053  T
Q  124 ttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||| ||| ||||| | |||| || | ||||||||    
T  37985054 ttcagagacgaaaaatcaaatgacatatatttgca 37985088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 17366846 - 17366947
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||  ||||||||||       | |||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17366846 ggcaccacgtcgctaatgacaacccacctcagcaaaaaaacctaattaggaccaaaagtcaattgattaatatttgcagtggcagattggaaggattagt 17366945  T
Q  121 aa 122  Q
    ||    
T  17366946 aa 17366947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 22309583 - 22309454
Alignment:
Q  29 gtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcat 128  Q
    |||| ||||||||| ||||||||||       | ||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||    
T  22309583 gtcgctaatgacagcccacctcagcaaaaaaacctaaatatgaccaaaagtcaaatgattaatatgtgcagtggcagattggaaggattagtaacttcat 22309484  T
Q  129 agatgaaaatttaaataacttttatttgca 158  Q
     ||  |||||| |||| || | ||||||||    
T  22309483 tgactaaaattcaaatgacctatatttgca 22309454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 8089570 - 8089475
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || |||||||||||||||| |||||||||| ||||||||| |||||||||||| |||| ||| ||||||| |||| || | ||||||||    
T  8089570 taattaggaccaaaagtcaaatgattgatatttgcaggggcagattggaaggattagtaacttcaaagacgaaaattcaaatgacatatatttgca 8089475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 41846552 - 41846429
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||||||||| | | |       | |||||||||| |||||||||||||||||||||||||||||||||||  |||||||| |    
T  41846552 ggcaccacgtcgctaatgacagtccactttaacaaaaaaacctaattatgattaaaagtcaaatgattaatatttgcagtggcagattagaaggattact 41846453  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  41846452 aacttcagggacgaaaattcaaat 41846429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 1150055 - 1149960
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  1150055 taattaggaccaaaagtcaaatgattaatatttgcaggggccgattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 1149960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 32519263 - 32519156
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacat 171  Q
    |||||||||||||||||||||||||||  ||| |||| |||||||||||||||||  || ||||||| |||| || | |||||||| | || ||| ||||    
T  32519263 caaaagtcaaatgattaatatttgcaggagcatattggaaggattagtaatttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacat 32519164  T
Q  172 atttaagc 179  Q
    ||||||||    
T  32519163 atttaagc 32519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 9959107 - 9959156
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcat 128  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  9959107 tcaaatgattaatatttgtagtggcagattgaaaggattagtaacttcat 9959156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 16367229 - 16367310
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  16367229 taattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaat 16367310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 28599693 - 28599785
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttattt 155  Q
    |||||| || ||||||||||||||||||  |||||| |||||||||| ||||||| |||| |||| ||| ||||||| |||| |||| |||||    
T  28599693 taattaggaccaaaagtcaaatgattaaattttgcaatggcagattggaaggatttgtaacttcagagacgaaaattcaaatgacttatattt 28599785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 17580446 - 17580391
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggatta 118  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||    
T  17580446 taattaggatcaaaagtcaaatgattaatatttgcaggggcaaattggaaggatta 17580391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 19607037 - 19606954
Alignment:
Q  61 cttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||| || ||||||||||||||||||||||||||  | ||||||| |||||||||||| ||||  || ||||||| ||||    
T  19607037 cttaattaggaccaaaagtcaaatgattaatatttgcaacgacagattggaaggattagtaacttcagggacgaaaattcaaat 19606954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 22731808 - 22731879
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||  || ||||||| ||||    
T  22731808 caaaagtcaaatgattaatatttgcagggacagattgaaaggaatagtaacttcacggacgaaaattcaaat 22731879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 9958933 - 9958827
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaaacata 172  Q
    |||||||||| |||||||||||||||||||| ||||| ||| ||||| || ||||| || ||||||| |||| |  | |||||||| | || ||||| ||    
T  9958933 caaaagtcaactgattaatatttgcagtggctgattggaagcattagcaacttcattgacgaaaattcaaatgatctatatttgcagggacgaaaaccta 9958834  T
Q  173 tttaagc 179  Q
    |||||||    
T  9958833 tttaagc 9958827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 17366726 - 17366649
Alignment:
Q  81 aaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||  || ||||||| |||| || | ||||||||    
T  17366726 aaatgattaatatttgcagtggcagattggaaggattattaaattcagggaagaaaattcaaatgacctatatttgca 17366649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 20911354 - 20911459
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||| ||||||         ||||||||| ||||||||||||||||||||||||||| | ||||||| || |||||||    
T  20911354 ggcaccacgtcgctaatgacagcccatctcagcaaaaaaatctaattatgaccaaaagtcaaatgattaatatttgcag-gacagattggaatgattagt 20911452  T
Q  121 aatttca 127  Q
    || ||||    
T  20911453 aacttca 20911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 45663774 - 45663855
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| | ||||||  |||||||||||| ||||  || ||||||| ||||    
T  45663774 taattaggaccaaaagtcaaatgattaatatttgcagggccagatttgaaggattagtaacttcagggacgaaaattcaaat 45663855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 5608710 - 5608646
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| |||||||||||||||||||||  ||||||||| || |||| |||||||||||| ||||    
T  5608710 taattaagatcaaaagtcaaatgattaaattttgcagtgccaaattggaaggattagtaacttca 5608646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 41846674 - 41846722
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  41846674 tcaaatgattaatatttgcagtggcagattggaaggagtagtaacttca 41846722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 4375651 - 4375588
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaa 142  Q
    |||||||||||||||||||  ||||| | || |||||||| |||||||| ||||||||||||||    
T  4375651 tcaaatgattaatatttgctatggcaaaatggaaggattaataatttcagagatgaaaatttaa 4375588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 10446932 - 10446869
Alignment:
Q  81 aaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  10446932 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaat 10446869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 8089678 - 8089780
Alignment:
Q  23 caccacgtcgttaatgacagtccacctcagcnnnnnnn-cttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    |||||||||| ||||||||||||||||||||        | |||||| || |||||||||||||||||||||||   | ||||||||| |||||||||||    
T  8089678 caccacgtcgctaatgacagtccacctcagcaaaaaaaacctaattaggaccaaaagtcaaatgattaatattt---ggggcagattggaaggattagta 8089774  T
Q  122 atttca 127  Q
    | ||||    
T  8089775 acttca 8089780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 43681963 - 43681857
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacata 172  Q
    ||||||||||||||||||||||||| ||||| | || || ||||||||| || || || ||||||| |||| || | |||||||| | || ||| |||||    
T  43681963 aaaagtcaaatgattaatatttgcaatggcaaaatggaatgattagtaactttatggacgaaaattcaaatgacatatatttgcagggacgaaagacata 43681864  T
Q  173 tttaagc 179  Q
    |||||||    
T  43681863 tttaagc 43681857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 5608876 - 5608941
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||| ||||| | ||||||||||||||| || | ||| ||||||| ||||    
T  5608876 tcaaatgattaatatttgcaatggcaaaatgaaaggattagtaactttagagaggaaaattcaaat 5608941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 11830226 - 11830307
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||| ||||| |||||| |||| |||| | | |||||||||| |||||||||||| | ||| |||||||||| ||||    
T  11830226 taattatgaccaaaaatcaaataattagtattcgtaatggcagattggaaggattagtaactccatggatgaaaattcaaat 11830307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 28599529 - 28599464
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||| ||||| | || |||||||||||| ||||| || ||||||| ||||    
T  28599529 tcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcatggacgaaaattcaaat 28599464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 17580552 - 17580649
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||  ||||||||||       | |||||| || ||||||||||    |||||||||||||||||| |||| ||||||||||    
T  17580552 ggcaccacgtcgctaatgacaacccacctcagcaaaaaaacctaattaggaccaaaagtcaa----ttaatatttgcagtggcatattggaaggattagt 17580647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 19620777 - 19620848
Alignment:
Q  65 attatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaa 136  Q
    |||| ||| |||| ||||||||||||||||||||| |||| | || |||||||||||| ||||  |||||||    
T  19620777 attaggatgaaaattcaaatgattaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaa 19620848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 22309713 - 22309792
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||| ||||  || ||||||| |||| || | ||||||||    
T  22309713 tcaaatgattaatatttgcagtgtcagattggaacaattagtaacttcagggacgaaaattcaaatgacctatatttgca 22309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 41801976 - 41801818
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||| |||| ||||||||||       | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  41801976 ggcaccacgtcgctaataacagcccacctcagcaaaaaaacctaattatgatcaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 41801877  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaag 178  Q
    || ||||   | ||||||| |||| || | |||||||| | || |||||||||||||||    
T  41801876 aacttcaggaacgaaaattcaaatgacctatatttgcagggacgaaaaacatatttaag 41801818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 43866935 - 43867058
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||||| || ||||||||| ||||||||||       | |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43866935 ggcaccacgccgctaatgacagcccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagt 43867034  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||| || ||||||| ||||    
T  43867035 aacttcatggacgaaaattcaaat 43867058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 40525625 - 40525495
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | |    
T  40525625 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaatgacatatatttgcaggaa 40525526  T
Q  163 c-aaaaacatatttaagctttaaatttatat 192  Q
    | ||| || ||||||||| || |||||||||    
T  40525525 cgaaagacttatttaagcctttaatttatat 40525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 41182120 - 41182279
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||| ||       | |||||| || ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  41182120 ggcaccacgtcgctaatgacagcccacctcggcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaatgattagt 41182219  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  41182220 aacttcagggacgaaaattcaaatgacatatatttgcagggacgaaagacatatttaagc 41182279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 11478369 - 11478475
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||||||||||||||       | |||||| || ||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  11478369 ggcaccacgtcgctaatgacagtccacctcagcaaaaaaacctaattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagt 11478468  T
Q  121 aatttca 127  Q
    || ||||    
T  11478469 aacttca 11478475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 11478253 - 11478146
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacat 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  || ||||||| |||| || | |||||||| | || |||||| |    
T  11478253 caaaagtcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagggacgaaaaacct 11478154  T
Q  172 atttaagc 179  Q
    ||||||||    
T  11478153 atttaagc 11478146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 7659 - 7740
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||| || ||||||| ||||    
T  7659 taattatgaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcatggacgaaaattcaaat 7740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 36623470 - 36623353
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||  || ||||||| ||||  | | |||||||| | |    
T  36623470 taattaggaccaaaagtcaaatgattaatatttgcaggagcagattgaaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcaggga 36623371  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||||||||||||||||    
T  36623370 cgaaaaacatatttaagc 36623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 40422278 - 40422202
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||| |||||||    
T  40422278 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaaggattagttacttcagagacgaaaatt 40422202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 40525773 - 40525857
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataac 147  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||  || ||||||| |||||||    
T  40525773 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaatgattagtaatttcagggacgaaaattcaaataac 40525857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 35163615 - 35163520
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||  || ||||||| ||||  ||| ||||||||    
T  35163615 taattatgaccaaaagtcaaatgattaaattttgcagtggcagattgaaaggatcagtaacttcaaggacgaaaattcaaatggcttatatttgca 35163520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 29190436 - 29190506
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||| |||||| ||||    
T  29190436 aaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagataaaaattcaaat 29190506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 25287910 - 25287829
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  25287910 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaat 25287829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 37342942 - 37342836
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||| |||| ||||||||  ||||||||||       | |||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37342942 ggcaccatgtcgctaatgacaacccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcggattgaaaggattagt 37342843  T
Q  121 aatttca 127  Q
    || ||||    
T  37342842 aacttca 37342836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 41251392 - 41251457
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcat 128  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||    
T  41251392 taattatgaccaaaagtcaaatgattaatatttgcaggggtagattgaaatgattagtaacttcat 41251457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 547548 - 547432
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||| ||||||||||||||||||| ||||||||| |||||||||||| ||||  ||  |||||||||||  | | |||||||| | |    
T  547548 taattaggaccaaaagtgaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaatttaaatggcctatatttgcaggga 547449  T
Q  163 caaaaacatatttaagc 179  Q
    | ||| |||||||||||    
T  547448 cgaaagcatatttaagc 547432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 22763863 - 22763943
Alignment:
Q  64 aattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||| ||||||||||||||||||||||| || || ||||||| |||||||||||| |||| ||| ||||||| ||||    
T  22763863 aattatgaccaaaagtcaaatgattaatatttacaatgacagattggaaggattagtaacttcagagacgaaaattcaaat 22763943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 547701 - 547760
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  547701 taattaggaccaaaagtcaaatgattaatatttgtagtggcagattggaaggattagtaa 547760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 26739993 - 26740104
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtgg-cagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaaca 170  Q
    |||||||||||||||||||||||| || || ||||||| |||||||||||| ||||| || ||||||| |||| || | |||||||| | || ||| |||    
T  26739993 caaaagtcaaatgattaatatttgtagggggcagattgcaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggacgaaagaca 26740092  T
Q  171 tatttaagcttt 182  Q
    ||||||||||||    
T  26740093 tatttaagcttt 26740104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 37343048 - 37343143
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||  || ||||||| |||| || | ||||||||    
T  37343048 taattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatgacctatatttgca 37343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 38619909 - 38619835
Alignment:
Q  70 gatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||  || ||||||| ||||    
T  38619909 gatcaaaagtcaaatgattaaattttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaat 38619835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 26739835 - 26739754
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || |||| |||||||||||||||||||||| | || ||||||||||||||||||||||  || ||||||| ||||    
T  26739835 taattaggaccaaacgtcaaatgattaatatttgcagggacatattgaaaggattagtaatttcagggacgaaaattcaaat 26739754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 36623619 - 36623700
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||  || ||||||| ||||    
T  36623619 taattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaat 36623700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 43866829 - 43866748
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||  || ||||||| ||||    
T  43866829 taattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaat 43866748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 20096138 - 20096074
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||    
T  20096138 taattaggaccaaaagtcaaatgattaatatttgcagaggcaaattggaaggattagtaacttca 20096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 23424630 - 23424566
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||  || |||||||| ||||    
T  23424630 taattaggatcaaaagtcaaatgattaatatttgcaggggcagattgttagaattagtaacttca 23424566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 27856860 - 27856796
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||    
T  27856860 taattaagaccaaaagtcaaatgattaatatttgcaggggcggattggaaggattagtaacttca 27856796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 29190278 - 29190202
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||| || ||||||||||||||||||||||||||| |  |||||| |||||||||||| |||| ||| |||||||    
T  29190278 taattaggaccaaaagtcaaatgattaatatttgcagggatagattggaaggattagtaacttcagagacgaaaatt 29190202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 31690166 - 31690226
Alignment:
Q  67 tatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||    
T  31690166 tatgaccaaaagttaaatgattaatatttgcagtggcagattggaatgattagtaacttca 31690226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 41251241 - 41251165
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    ||||||||| |||||||||||||||||||||||| || | || |||| |||||||||||| |||| ||| |||||||    
T  41251241 taattatgaccaaaagtcaaatgattaatatttgtagggacatattggaaggattagtaacttcagagacgaaaatt 41251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 7552 - 7416
Alignment:
Q  22 gcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    ||||||||||| |||||||||||||| |||||       | ||||||||| |||||||||||||||||||||||| || | ||  ||| ||| |||||||    
T  7552 gcaccacgtcgctaatgacagtccacttcagcaaaaaaacctaattatgaccaaaagtcaaatgattaatatttgtagggacatgttggaagaattagta 7453  T
Q  122 atttcatagatgaaaatttaaataacttttatttgca 158  Q
    | ||||  || ||||||| |||| || | ||||||||    
T  7452 acttcagggaagaaaattcaaatgacctatatttgca 7416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 40422442 - 40422521
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  40422442 tcaaatgattaatatttgcagtggcagatttgaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 40422521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 27856966 - 27857089
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||||||||  |||||||| |||||| |||       | |||||| || ||||||||||||||||||||||||||  ||||||||| || |||||||    
T  27856966 ggcaccacgtcgccaatgacagcccaccttagcaaaaaaacataattaggaccaaaagtcaaatgattaatatttgcaagggcagattggaatgattagt 27857065  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  27857066 aacttcagggacgaaaattcaaat 27857089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 23424778 - 23424859
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||| || ||||||||| ||||  || ||||||| ||||    
T  23424778 taattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaatgattagtaacttcagggacgaaaattcaaat 23424859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 25288068 - 25288132
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||||||||||||| |||| | ||| ||||||||||| ||||  ||||||||    
T  25288068 caaaagtcaaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaa 25288132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 37713798 - 37713722
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttattt 155  Q
    |||||||||||||||||||| ||| |||||||||| |||| ||| ||||| || ||||||| |||| |||| |||||    
T  37713798 tcaaatgattaatatttgcaatggtagattgaaagaattaataacttcatggacgaaaattcaaatgacttatattt 37713722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 41802082 - 41802158
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||| ||||||| |||||||||| ||||||||||| |||| |||| || ||||||||| ||||  ||||||||||    
T  41802082 taattaggatcaaatgtcaaatgataaatatttgcaggggcaaattggaatgattagtaacttcaaggatgaaaatt 41802158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 9632430 - 9632329
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa-acatatttaa 177  Q
    |||||||||||||||||||| || || | || |||||||||||| ||||  || ||||||| |||| || | |||||||||| |||||| || |||||||    
T  9632430 tcaaatgattaatatttgcaatgacaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaaggacaaaagacctatttaa 9632331  T
Q  178 gc 179  Q
    ||    
T  9632330 gc 9632329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 22763697 - 22763588
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaa 177  Q
    |||||||||||||||||| ||||| |||||  || ||||||||| ||||  || ||||||| |||| || | |||||||||| || ||| || |||||||    
T  22763697 tcaaatgattaatatttgtagtggtagattagaaagattagtaacttcagggacgaaaattcaaatgacctatatttgcaaggacgaaatacctatttaa 22763598  T
Q  178 gctttaaatt 187  Q
    || |||||||    
T  22763597 gcattaaatt 22763588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 31689997 - 31689932
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||| ||||||||||||| |||| ||||||| |||| ||||| || ||||||| ||||    
T  31689997 tcaaatgattaacatttgcagtggcatattggaaggattggtaacttcatggacgaaaattcaaat 31689932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 24529780 - 24529732
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||||||||||||||||| ||||| |||| |||||||||||| ||||    
T  24529780 tcaaatgattaatatttgcactggcacattggaaggattagtaacttca 24529732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 23514123 - 23514080
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||||||||||||| ||||| | |||||||||||||||    
T  23514123 tcaaatgattaatatttgcaatggcaaaatgaaaggattagtaa 23514080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 38599066 - 38599008
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||||||| |||| | ||| ||||||||||| ||||  ||||||||    
T  38599066 tcaaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaa 38599008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 38600226 - 38600280
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||| ||||||||||||  ||||||||||| | |||||||||||||||| ||||    
T  38600226 caaaactcaaatgattaaattttgcagtggctgtttgaaaggattagtaacttca 38600280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 24529946 - 24529986
Alignment:
Q  87 ttaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  24529946 ttaatatttgcagtggcagataggaaggattagtaacttca 24529986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 10886 - 11045
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||||||||||||||       | |||||| || |||||||||||||||||||||||| || ||| |||||||| |||||||    
T  10886 ggcaccacgtcgctaatgacagtccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgtaggggcggattgaaaagattagt 10985  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||| || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  10986 aacttcatggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 11045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 10770 - 10685
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||  || ||||||| ||||  ||| ||||||||    
T  10770 caaaagtcaaatgattaatatttgcaggggcatattgaaaggattaataatttcagggacgaaaattcaaatggcttatatttgca 10685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 12991012 - 12991171
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  12991012 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggatcaaaagtcaaatgattaatatttgcaggggtagattggaaggattagt 12991111  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || |||| ||| ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  12991112 aacttcagagacgaaaattcaaatgacatatatttgcagggacgaaagacatatttaagc 12991171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 13064633 - 13064792
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  13064633 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 13064732  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || || | ||| ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  13064733 aactttagagacgaaaattcaaatgacatatatttgcagggacgaaagacatatttaagc 13064792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 6421898 - 6421983
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||||||| |||| |||| ||||||||    
T  6421898 caaaagtcaaatgattaatatttgcaggggcatattgaaaggattagtaatttcagggacgaaaattcaaatgacttatatttgca 6421983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 7015626 - 7015545
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||| ||||    
T  7015626 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagtaacttcatggatgaaaattcaaat 7015545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 37945218 - 37945324
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| |||||||| |         ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  37945218 ggcaccacgtcgctaatgacagcccacctcaacaaaaaaatctaattatgatcaaaagtcaaatgattaatatttgcaagggcagattgaaaggattagt 37945317  T
Q  121 aatttca 127  Q
    || ||||    
T  37945318 aacttca 37945324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 14745566 - 14745471
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  |||||||||| |||| || | ||||||||    
T  14745566 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttgca 14745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 32052490 - 32052613
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| |||| || | |||||||| | |    
T  32052490 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaggga 32052589  T
Q  163 c-aaaaacatatttaagctttaaa 185  Q
    | ||| |||||||||||| |||||    
T  32052590 cgaaagacatatttaagccttaaa 32052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 20704937 - 20705059
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  20704937 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattaatatttgcag-ggcagattgaaaagattagt 20705035  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || |||| ||| ||||||| ||||    
T  20705036 aacttcaaagacgaaaattcaaat 20705059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 32052384 - 32052225
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| |||||| |||         |||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  32052384 ggcaccacgtcgctaatgacagcccaccttagcaaaaaaatctaattaggatcaaaagtcaaatgattaatatttgcaggggcggattggaaggattagt 32052285  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||  || ||||||| |||| || | ||||| || | || ||||||||||||||||    
T  32052284 aacttcagggacgaaaattcaaatgacctatatttacagggacgaaaaacatatttaagc 32052225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 6421782 - 6421676
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||| |||||||||||       | |||||| || |||||||||||||||||||||||| || |||||||||||| |||||||    
T  6421782 ggcaccacgtcgctaatgacaatccacctcagcagaaaaacctaattaggaccaaaagtcaaatgattaatatttgtaggggcagattgaaaagattagt 6421683  T
Q  121 aatttca 127  Q
    || ||||    
T  6421682 aacttca 6421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 18013837 - 18013958
Alignment:
Q  22 gcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    ||||||||||| ||||||||||||||||||||       | ||||||  | |||||||||||| |||||||||||||| ||||||||||||||||| |||    
T  18013837 gcaccacgtcgctaatgacagtccacctcagcaaaaaaacctaattaaaaccaaaagtcaaataattaatatttgcagaggcagattgaaaggattggta 18013936  T
Q  122 atttcatagatgaaaatttaaat 144  Q
    | ||||  || ||||||||||||    
T  18013937 acttca-ggacgaaaatttaaat 18013958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 27753593 - 27753520
Alignment:
Q  66 ttatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| || |||||||    
T  27753593 ttataatcaaaagtcaaatgattaatatttgcagtggcagtttggaaggattagtaacttcatggacgaaaatt 27753520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 8323281 - 8323417
Alignment:
Q  22 gcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagta 121  Q
    |||||||||||||||||| || ||||||||||       | |||||| || |||||||||||||||||||||||||| ||||| | |||||| |||||||    
T  8323281 gcaccacgtcgttaatgatagcccacctcagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaatggcaaaatgaaagaattagta 8323380  T
Q  122 atttcatagatgaaaatttaaataacttttatttgca 158  Q
    | ||||  || ||||||| ||||| | | ||||||||    
T  8323381 acttcaaggacgaaaattcaaatagcatatatttgca 8323417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 33735579 - 33735674
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  33735579 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 33735674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 27753761 - 27753831
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataactt 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||| | | ||||||| |||||||||    
T  27753761 tcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagaaacgaaaattcaaataactt 27753831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 7015791 - 7015872
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaag 160  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||| |||  |||| ||||||||||    
T  7015791 tcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaacgacttatatttgcaag 7015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 25253313 - 25253469
Alignment:
Q  24 accacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaat 123  Q
    ||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||| ||||||||  ||||||||| ||||||||||||     
T  25253313 accacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattagtatttgcaagggcagattggaaggattagtaac 25253412  T
Q  124 ttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  25253413 ttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 25253469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 25317104 - 25317260
Alignment:
Q  24 accacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaat 123  Q
    ||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||| ||||||||  ||||||||| ||||||||||||     
T  25317104 accacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattagtatttgcaagggcagattggaaggattagtaac 25317203  T
Q  124 ttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    ||||  || ||||||| |||| || | |||||||| | || ||| ||||||||||||    
T  25317204 ttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagc 25317260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 33735471 - 33735367
Alignment:
Q  23 caccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||| ||||||||  ||||||||||       | ||||||  | ||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  33735471 caccacgtcgctaatgacatcccacctcagcaaaaaaacctaattagaaccaaaagtcaaatgattaatatttgcagggacagattggaaggattagtaa 33735372  T
Q  123 tttca 127  Q
    |||||    
T  33735371 tttca 33735367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 25253204 - 25253123
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  25253204 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaat 25253123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 25316994 - 25316913
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  25316994 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaat 25316913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 37945112 - 37945031
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  37945112 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaat 37945031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 18934815 - 18934711
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca-caaaaacatatttaa 177  Q
    |||||||| ||||||||||| ||||| | ||||||||||||||| ||||| || ||||||| |||| |||| |||||||| | |  ||| ||||||||||    
T  18934815 tcaaatgactaatatttgcaatggcaaaatgaaaggattagtaacttcatggacgaaaattcaaatgacttatatttgcagggatgaaagacatatttaa 18934716  T
Q  178 gcttt 182  Q
    |||||    
T  18934715 gcttt 18934711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 14745589 - 14745660
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  14745589 caaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaacttcagcgacgaaaattcaaat 14745660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 18013720 - 18013649
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  18013720 caaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcactgacgaaaattcaaat 18013649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 22533550 - 22533411
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||| |||| ||||||||| ||||||||||       | ||||||||| ||||||| ||||||||||  |||| |||||||||||| || ||||| |    
T  22533550 ggcaccatgtcgctaatgacagcccacctcagcaaaaaaacctaattatgaccaaaagttaaatgattaaattttgtagtggcagattggaatgattaat 22533451  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaag 160  Q
    || ||||  || ||||||| |||| || | ||||||||||    
T  22533450 aacttcagggacgaaaattcaaatgacctatatttgcaag 22533411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 18934980 - 18935044
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||||| | ||||||||||||||||||  |||||||||||| |||  |||||||||||||||||    
T  18934980 taattataaccaaaagtcaaatgattaaattttgcagtggcaaattagaaggattagtaatttca 18935044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 22024152 - 22024195
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  22024152 tcaaatgattaatatttgcagtggcaaattggaaggattagtaa 22024195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 41339472 - 41339378
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgc 157  Q
    |||||| || ||||||||||||||| ||  ||||||||||||||||| || |||||| || ||||  || ||||||| |||| |||| |||||||    
T  41339472 taattaggaccaaaagtcaaatgataaaattttgcagtggcagattggaaagattagcaacttcagggacgaaaattcaaatgacttatatttgc 41339378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 20704844 - 20704763
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttattt 155  Q
    |||||||||||||||||||||||||  |  | ||| ||||||||||||||||||  ||| |||||| |||| |||| |||||    
T  20704844 aaaagtcaaatgattaatatttgcaaggataaattaaaaggattagtaatttcagggataaaaattcaaatgacttatattt 20704763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 21260967 - 21260888
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||||||| ||||| | || |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  21260967 tcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 21260888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 21261129 - 21261203
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    |||||| || |||||||||||||| | |  ||||| ||||||||||| |||||||| ||| ||||| ||||||||    
T  21261129 taattaggaccaaaagtcaaatgagtgaactttgcggtggcagattggaaggattaataacttcatggatgaaaa 21261203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 22249893 - 22249734
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    ||||||||| || ||||||||| |||||||| |       | |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22249893 ggcaccacgccgctaatgacagcccacctcaacaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattgaaaggattagt 22249794  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||| || ||||||| |||| |  | |||||||| | || ||||||||||||||||    
T  22249793 aacttcatggacgaaaattcaaatgatctatatttgcagggacgaaaaacatatttaagc 22249734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 50246017 - 50245894
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| |||||||||||||||| |||       | |||||| ||  |||||||||||||||||||||||||||||||||||| || |||||||    
T  50246017 ggcaccacgtcgctaatgacagtccaccttagcgaaaaaacctaattaagactaaaagtcaaatgattaatatttgcagtggcagattggaatgattagt 50245918  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||| |||||||||| ||||    
T  50245917 aacttcatggatgaaaattcaaat 50245894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 34238588 - 34238506
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaata 145  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  34238588 taattatgaccaaaagtcaaatgattaatatttgcaggggcatattgaaaggattagtaacttcagagacgaaaattcaaata 34238506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 19916938 - 19917039
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaa 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||| || | |||||||| | || |||||| |||||||    
T  19916938 tcaaatgattaatatttgcagtggcagattgaaatgattagtaacttcaaagacgaaaatttaaatgacctatatttgcagggacgaaaaacctatttaa 19917037  T
Q  178 gc 179  Q
    ||    
T  19917038 gc 19917039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 33294262 - 33294145
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagca 162  Q
    ||||||||| ||||||| ||||||||||||||||||| |||| |||| |||||||||||| ||||| ||  |||||| ||||||| | |||||||| | |    
T  33294262 taattatgaccaaaagttaaatgattaatatttgcaggggcaaattggaaggattagtaacttcatggacaaaaattcaaataacctatatttgcatgga 33294163  T
Q  163 c-aaaaacatatttaagc 179  Q
    | ||||||||||||||||    
T  33294162 caaaaaacatatttaagc 33294145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 19916774 - 19916679
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |  |||||||||||| || | ||||||||    
T  19916774 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaaggattagtaacttcaggggcgaaaatttaaatgacctatatttgca 19916679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 47981873 - 47981984
Alignment:
Q  34 taatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatg 133  Q
    ||||||||||||||||||||       | |||||| || ||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| ||| |    
T  47981873 taatgacagtccacctcagcaaaaaaacctaattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacg 47981972  T
Q  134 aaaatttaaata 145  Q
    |||||| |||||    
T  47981973 aaaattcaaata 47981984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 54961549 - 54961468
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  54961549 taattatgatcaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaat 54961468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 37678130 - 37678209
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||||||||  ||| ||||||||    
T  37678130 tcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaatttaaatggcttatatttgca 37678209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 13872229 - 13872070
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||         |||||| || ||||||||||||||||| ||||||||  |||| |||| |||||||| |    
T  13872229 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaatctaattaggaccaaaagtcaaatgattagtatttgcaagggcatattggaaggattaat 13872130  T
Q  121 aatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaagc 179  Q
    || ||||| || ||||||| ||||||| | |||||||| | || ||| ||||||||||||    
T  13872129 aacttcatggacgaaaattcaaataacctatatttgcagggacgaaagacatatttaagc 13872070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 20086597 - 20086474
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| |||||||| |       | |||||| ||  |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  20086597 ggcaccacgtcgctaatgacagcccacctcaacaaaaaaacctaattaggactaaaagtcaaatgattaatatttgcaggggcagattggaaggattagt 20086498  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  20086497 aacttcagggacgaaaattcaaat 20086474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 12691630 - 12691735
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||| ||||||||||       || ||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  12691630 ggcaccacgtcgctaatgacagcccacctcagcaaaaaaact-aattaggaccaaaagtcaaatgattaatatttgcaggggcggattggaaggattagt 12691728  T
Q  121 aatttca 127  Q
    || ||||    
T  12691729 aacttca 12691735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 47862259 - 47862175
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| ||| ||||||| |||| || | ||||||||    
T  47862259 aaaagtcaaatgattagtatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatgacatatatttgca 47862175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 37677966 - 37677871
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||| | |||||||||||| ||||  || ||||||| |||| || | ||||||||    
T  37677966 taattatgaccaaaagtcaaatgattaaattttgcagtggcagatcggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 37677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 50246140 - 50246219
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||| || ||||||| |||| || | ||||||||    
T  50246140 tcaaatgattaatatttgcagtgacagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgca 50246219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 20601212 - 20601266
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggatt 117  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  20601212 taattatgatcaaaagtcaaatgatttatatttgcaatgacagattgaaaggatt 20601266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 53559611 - 53559734
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||  ||||||||| |||||| |||       | |||||| || ||||||||||||||||||||||||||| ||||||||| || |||||||    
T  53559611 ggcaccacgtcactaatgacagcccaccttagcaaaaaaacctaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaacgattagt 53559710  T
Q  121 aatttcatagatgaaaatttaaat 144  Q
    || ||||  || ||||||| ||||    
T  53559711 aacttcagggacgaaaattcaaat 53559734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 47862418 - 47862499
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||  |||||||||||| ||||| || ||||||| ||||    
T  47862418 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattagaaggattagtaacttcatggacgaaaattcaaat 47862499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 54961655 - 54961761
Alignment:
Q  21 ggcaccacgtcgttaatgacagtccacctcagcnnnnnnncttaattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagt 120  Q
    |||||||||||| ||||||||  |||||||| |       | |||||| || ||||||||||||||||||||||| | | ||||||||||||||||||||    
T  54961655 ggcaccacgtcgctaatgacaacccacctcaccaaaaaaacctaattaggagcaaaagtcaaatgattaatatttacgggggcagattgaaaggattagt 54961754  T
Q  121 aatttca 127  Q
    || ||||    
T  54961755 aacttca 54961761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 13872335 - 13872399
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||    
T  13872335 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaagaattagtaacttca 13872399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 53559505 - 53559441
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||    
T  53559505 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattaataacttca 53559441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 8287209 - 8287280
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||  || ||||||| ||||    
T  8287209 caaaagtcaaatgattaaattttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaat 8287280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 22250010 - 22250080
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||||||||||||||||||||| |||| |||| ||| |||||||||||||  || ||||||| ||||    
T  22250010 aaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaat 22250080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 12691524 - 12691443
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || |||||||||||||||||||||||| || | ||||||| |||||||||||| ||||  || ||||||| ||||    
T  12691524 taattaggaccaaaagtcaaatgattaatatttgtagggacagattggaaggattagtaacttcagggacgaaaattcaaat 12691443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 26601342 - 26601423
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||  |||| |||| || ||||||||| ||||| || ||||||| ||||    
T  26601342 taattaggaccaaaagtcaaatgattaatatttgcatgggcatattggaatgattagtaacttcatggacgaaaattcaaat 26601423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 33294409 - 33294490
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||| | |||||||||||| ||||  || ||||||| ||||    
T  33294409 taattaggaccaaaaatcaaatgattaatatttgcaggggcagatcggaaggattagtaacttcagggacgaaaattcaaat 33294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 47980803 - 47980722
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| |||||||||||||||||||||||||||||| |  |||||| |||||| ||||| ||||  || ||||||| ||||    
T  47980803 taattaggatcaaaagtcaaatgattaatatttgcagggatagattggaaggatcagtaacttcagggacgaaaattcaaat 47980722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 48507683 - 48507764
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||  ||||  ||||||||||| |||||||||||| |||| ||| ||||||| ||||    
T  48507683 taattaagaccaaaagtcaaatgattaaattttgttgtggcagattggaaggattagtaacttcagagacgaaaattcaaat 48507764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 27813319 - 27813383
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    ||||||||| |||||||||| | |||||  ||||||||||||||||| |||||||||||| ||||    
T  27813319 taattatgaccaaaagtcaagtaattaaattttgcagtggcagattggaaggattagtaacttca 27813383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 45199229 - 45199169
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatt 139  Q
    |||||||||||||||||||| || || ||||||||||||||||| |||| ||| |||||||    
T  45199229 tcaaatgattaatatttgcactgtcatattgaaaggattagtaacttcagagacgaaaatt 45199169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 52339303 - 52339249
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttca 127  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||||||| ||||    
T  52339303 caaaagtcaagtgattaatatttgcagggaaagattgaaaggattagtaaattca 52339249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 8287034 - 8286955
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||||||||||||||||| ||||| | || |||||||| ||| |||| ||| ||||||| ||||  ||| ||||||||    
T  8287034 tcaaatgattaatatttgcaatggcaaaatggaaggattattaacttcagagacgaaaattcaaatggcttatatttgca 8286955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 20086714 - 20086772
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagat 132  Q
    |||||||||||||||||||||||||  | |||||| ||||||||| ||| |||| ||||    
T  20086714 aaaagtcaaatgattaatatttgcaaagccagattaaaaggattaataacttcagagat 20086772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 53477078 - 53477136
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||||||| |||| | ||  ||||||||||| |||| |||||||||    
T  53477078 tcaaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagagatgaaaa 53477136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 27813151 - 27813063
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcacaaaa 167  Q
    ||||||||||| |||||||| || || | || |||||| ||||| ||||| ||| |||||| |||| |||| |||||||| | ||||||    
T  27813151 tcaaatgattagtatttgcaatgacaaaatggaaggatcagtaacttcatggataaaaattcaaatgacttatatttgcagggacaaaa 27813063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 32846464 - 32846360
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgcaagcac-aaaaacatatttaa 177  Q
    |||||||||||||||||||| ||||| | || |||||||| ||| ||||   | ||||||| ||||  | | ||||||||||||| ||| || |||||||    
T  32846464 tcaaatgattaatatttgcaatggcaaaatggaaggattaataacttcaggaacgaaaattcaaatggcctatatttgcaagcacgaaagacctatttaa 32846365  T
Q  178 gcttt 182  Q
    |||||    
T  32846364 gcttt 32846360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 53475938 - 53475890
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||| ||||||||||||||||||||  ||||  ||||||||||||||||    
T  53475938 aaaactcaaatgattaatatttgcaagggcaatttgaaaggattagtaa 53475890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 859 - 940
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||  || ||||||| ||||    
T  859 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaat 940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 701 - 637
Alignment:
Q  73 caaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    ||||||||||||||||||||||||||| |||| | ||| ||||||||||| ||||  ||||||||    
T  701 caaaagtcaaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaa 637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 14159 - 14240
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || |||||||||||||||||||||||| || ||||||||| |||||||||||| ||||  |||||||||| ||||    
T  14159 taattaggaccaaaagtcaaatgattaatatttgtaggggcagattggaaggattagtaacttcagtgatgaaaattcaaat 14240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 14011 - 13949
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaattt 125  Q
    |||||| || ||||||||||||||||||||||||||| || || ||| |||||||||||||||    
T  14011 taattaggaccaaaagtcaaatgattaatatttgcaggggtaggttggaaggattagtaattt 13949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 10971 - 10876
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| ||||||||||||||||||||||||||||| ||||| | || |||||||||||| ||| | || ||||||| |||| || | ||||||||    
T  10971 taattaggatcaaaagtcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgca 10876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 8535 - 8470
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||| ||||    
T  8535 tcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaat 8470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 8709 - 8753
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggatta 118  Q
    |||||||||||||||||||||||||||| || |||| ||||||||    
T  8709 aaaagtcaaatgattaatatttgcagtgacaaattggaaggatta 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 10443 - 10362
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||  || ||||||| ||||    
T  10443 taattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaat 10362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 14500 - 14581
Alignment:
Q  63 taattatgatcaaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaat 144  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||  |||||||||||| ||||  || ||||||| ||||    
T  14500 taattatgttcaaaagttaaatgattaatatttacagtggcagatttgaaggattagtaacttcaaggacgaaaattcaaat 14581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 14337 - 14258
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaatttaaataacttttatttgca 158  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||  |||  || ||||||| |||| |||| ||||||||    
T  14337 tcaaattattaatatttgcagtggcaaattggaaggattagtaacctcaaggacgaaaattcaaatgacttatatttgca 14258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 120301 - 120258
Alignment:
Q  79 tcaaatgattaatatttgcagtggcagattgaaaggattagtaa 122  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||    
T  120301 tcaaatgattaatatttgcagttgcatattggaaggattagtaa 120258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 261108 - 261045
Alignment:
Q  74 aaaagtcaaatgattaatatttgcagtggcagattgaaaggattagtaatttcatagatgaaaa 137  Q
    |||| ||||||||||||||||||||| |||| | ||  ||||||||||| ||||| ||||||||    
T  261108 aaaattcaaatgattaatatttgcaggggcaaaatgggaggattagtaaattcatggatgaaaa 261045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University