View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_41 (Length: 237)
Name: NF9954_high_41
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44248931 - 44248709
Alignment:
| Q |
1 |
tcgtcaatggaagacctgactcaagctacctctattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248931 |
tcgtcaatggaagacctgactcaagctacctatattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcat |
44248832 |
T |
|
| Q |
101 |
caaaaacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248831 |
caaaaacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtc |
44248732 |
T |
|
| Q |
201 |
caccatataggctctgatggaag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
44248731 |
caccatataggctctgatggaag |
44248709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 15274434 - 15274608
Alignment:
| Q |
1 |
tcgtcaatggaagacctgactcaagctacctctattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15274434 |
tcgtcaatggaagacctgactcaaactacctatattggagatggaaaccaaaggagtgtgatcttccaatttttgaaccaaacacttttcttacactcat |
15274533 |
T |
|
| Q |
101 |
caaaaacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatc |
175 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
15274534 |
caacaacatgaacatagcttttgttggagactctttagctaggaaccaaatagagtcccttgtttgcttattatc |
15274608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 15262144 - 15262346
Alignment:
| Q |
5 |
caatggaagacctgactcaagctacctctattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcatcaaa |
104 |
Q |
| |
|
|||||||||||||||||||| |||||| || | ||||||||||||| |||||| | ||||||| |||||||||||||||||||| |||| | |||| |
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| T |
15262144 |
caatggaagacctgactcaaactacctttactatagatggaaaccaaatgagtgcaaacttccaaggtttgaaccaaacacttttctccaactaagcaaa |
15262243 |
T |
|
| Q |
105 |
aacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtccacc |
204 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||| | |||||| | ||||| ||| ||||| | ||||| ||||| |||| ||||||| |||||||| |
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| T |
15262244 |
aacagacacatatcttttgttggagattctttagctagaaaccaatttgagtctcttctttgcatgttatcaactgtttcaaaacctaaacctgtccacc |
15262343 |
T |
|
| Q |
205 |
ata |
207 |
Q |
| |
|
||| |
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|
| T |
15262344 |
ata |
15262346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 15288257 - 15288123
Alignment:
| Q |
33 |
tattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcatcaaaaacatgaacatagcttttgttggagact |
132 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||| ||||||||||||||||| || || ||||| || |||| | ||||||||||||||||| | |
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|
| T |
15288257 |
tattggagatggaagccaagtgagtgtaatctaccaaggtttgaaccaaacactttcctcaatctcattaagaacaaacatatagcttttgttggagatt |
15288158 |
T |
|
| Q |
133 |
ctttagcaaataaccaaatagagtcccttatttgc |
167 |
Q |
| |
|
|||| || | |||||| ||||||| ||| ||||| |
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|
| T |
15288157 |
ctttggctaggaaccaattagagtcacttctttgc |
15288123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 15257583 - 15257492
Alignment:
| Q |
36 |
tggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcatcaaaaacatgaacatagcttttgttgg |
127 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| ||||| || |||||||||||| || |||| |||||| |||| ||||||||||| |
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| T |
15257583 |
tggagatggaaaccaagtgaatgtaagcttccaaggtttgagcctaacacttttcttcaattcattgaaaacaaacacatggcttttgttgg |
15257492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 11807847 - 11807635
Alignment:
| Q |
3 |
gtcaatggaagacctgactcaagctacctctattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcatca |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
11807847 |
gtcaatggaagacctgacacaagctacctatattggagatggaaaccaaatgagtgtgatcttccaatttttgacccaaacacttttcttaaactcatga |
11807748 |
T |
|
| Q |
103 |
aaaacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtcca |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||| |||| |||||| | || | |
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|
| T |
11807747 |
gcaacatgaacatagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaa |
11807648 |
T |
|
| Q |
203 |
ccatataggctct |
215 |
Q |
| |
|
|||||||||||| |
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|
| T |
11807647 |
tcatataggctct |
11807635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 51382820 - 51383034
Alignment:
| Q |
1 |
tcgtcaatggaagacctgactcaagctacctctattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcat |
100 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||| |
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|
| T |
51382820 |
tcgttaatggaagaccggactcaaactaccttcattggagatggaaaccaagtgagtgtcatctttcaaattttgaaccaaacacatttcttaaactcat |
51382919 |
T |
|
| Q |
101 |
caaaaacatgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtc |
200 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||||| | | |||||||| ||||||||||| |||||||||||||||| |||| |||||||||||| |
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|
| T |
51382920 |
caacaacatgcatatagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtc |
51383019 |
T |
|
| Q |
201 |
caccatataggctct |
215 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
51383020 |
cgccatctaggctct |
51383034 |
T |
|
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