View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_high_43 (Length: 225)
Name: NF9954_high_43
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 2189163 - 2188990
Alignment:
| Q |
19 |
ctaataagtgttttgcaaatcatcaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacagcaatttgaataccatggaggttaca |
118 |
Q |
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| T |
2189163 |
ctaataagtgttttgcaaatcattaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacaacaatttgaataccatggaggttaca |
2189064 |
T |
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| Q |
119 |
attttcttgagatttccatatttatcctgaaattacttctgtatatatgataaacatgtaaggagatagcgagt |
192 |
Q |
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| T |
2189063 |
actttcttgagatttccatatttatcctaaaattacttctgtatatatgataaacatgtaatgagatagcgagt |
2188990 |
T |
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