View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_high_5 (Length: 568)
Name: NF9954_high_5
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1846590 - 1846882
Alignment:
| Q |
1 |
agaacaaacccgcaaaaaagactgggaagtctaatgttactgtgctggatgagtaagagtttttattgaataa-ctataatgtcagttgcattgctcctt |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
1846590 |
agaacaaacccgcaaaaa-gactgggaagtctaatgttactgtgctggatgcgtaagagtttttattgaataaactataatatcagttgcattgctccct |
1846688 |
T |
|
| Q |
100 |
ttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaacccattatgcagatttca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1846689 |
ttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaacccattatgcggatttca |
1846788 |
T |
|
| Q |
200 |
ttaatgttcgtgatacttttatgcaattgttttcgcctctctgttctttcttttcctgtatcttttgatggtgaagatatttctcttttatgag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846789 |
ttaatgttcgtgatacttttatgcaattgttttcgcctctctgttttttcttttcctgtatcttttgatggtgaagatatttctcttttatgag |
1846882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 290 - 553
Target Start/End: Original strand, 1847029 - 1847285
Alignment:
| Q |
290 |
tgagttgatatctattgtccagataaacaccaacgccctcaaacttctcggtgcatgacatcaatagttcagttggatggtgaataaattgaagagctac |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
1847029 |
tgagttgatatctattgtccagataaacaccaacaccctcaaacttctcggtgcatgacatactcaat--agttggatggtgaataaatttaagagctac |
1847126 |
T |
|
| Q |
390 |
tactgtcaagaggccgatgcttggccaaatctctgtggtggcgttggattgcttatggatggatcagatgagaagattttctacaactctagtacaactg |
489 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847127 |
tactgtcaagaggccgatgcttggcca-----ctgtggtggcgttggattgcttatggatggatcagatgagaagattttctacaactctagtacaactg |
1847221 |
T |
|
| Q |
490 |
ttggagtgttactccttaagatcagtcatcgaagggctgctatttcgcagtccaatgaagattt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847222 |
ttggagtgttactccttaagatcagtcatcgaagggctgctatttcgcagtccaatgaagattt |
1847285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 21778405 - 21778234
Alignment:
| Q |
108 |
aaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaa-----------cccattatgcagatt |
196 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || || |||| |||||| ||| | || |
|
|
| T |
21778405 |
aaaatttcatttaagatct-----tgatatcatgattctcactatgccatgaatttctatagaagagtttgaaaacatactagaacccattttgcggttt |
21778311 |
T |
|
| Q |
197 |
tcattaatgttcgtgatacttttatgcaattgttttcgcctctctgttctttcttttcctgtatcttttgatggtga |
273 |
Q |
| |
|
|| |||| ||| ||||||||||||| |||||||||||||||| | | ||||||||| |||||| ||||||||||| |
|
|
| T |
21778310 |
tctttaacattcttgatacttttatgtaattgttttcgcctctttatcttttcttttcttgtatcctttgatggtga |
21778234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 43863560 - 43863513
Alignment:
| Q |
134 |
atatcatgattctcactatgccatgaatttctataagagcgtaggaaa |
181 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
43863560 |
atatcatgattctcactatgatatgaatttctataaaagagtaggaaa |
43863513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University