View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_low_10 (Length: 521)
Name: NF9954_low_10
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_10 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 506030 - 505522
Alignment:
| Q |
1 |
atcaattaccttgttaaagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaag |
100 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506030 |
atcaattaccttcttagagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaag |
505931 |
T |
|
| Q |
101 |
ccaatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtatgtatgaacaaaatacaatcttgtatattaatttgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505930 |
ccaatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtatgtatgaacaaaatacaatcttgtatattaatttgtgt |
505831 |
T |
|
| Q |
201 |
ttttaggcttaatcgcgcttttgattcttttattgataattgttcttctcccttctggttttgctcattccc-------gtaagttaactcacgctnnnn |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||| |
|
|
| T |
505830 |
ttttaggcttaatcgcgcttttgattcttttattgataattgttcttctcccttctgtttttgctcattctcatcttttgtgagttaactcacgct-aaa |
505732 |
T |
|
| Q |
294 |
nnnncacacttgtctaagtttactcacgctgaaaataaaacatgtgtgagttagctcagattcagctattttaacgaaaatgagtaaaaatagatgggag |
393 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
505731 |
aaaacacacttgtctgagtttactcacgctgaaaataaaatatgtgtgagttagctcagattcaactattttgacgaaaatgagtaaaaatagatgggag |
505632 |
T |
|
| Q |
394 |
aagagaagttatctcttttattttacctaaagtaaagttgttttatctgatgtgacataatcattaatgacatgaacttcggttttaaaacgtgtggtga |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505631 |
aagagaagttatctcttttattttacctaaagtaaagttgttttatctgacgtgacatagtcattaatgacatgaacttcggttttaaaacgtgtggtga |
505532 |
T |
|
| Q |
494 |
aggcaataag |
503 |
Q |
| |
|
|||||||||| |
|
|
| T |
505531 |
aggcaataag |
505522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 20051923 - 20051762
Alignment:
| Q |
2 |
tcaattaccttgttaaagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggttttcaactggttatggagcttgttggaaagaagc |
101 |
Q |
| |
|
|||| |||||| | ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
20051923 |
tcaactaccttctcaaagtcgatccaaccattaatctagcttatgcaagtttcatctcatgtgggttttcaactggttatggtgctgcttggaaggaagc |
20051824 |
T |
|
| Q |
102 |
caatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtat |
163 |
Q |
| |
|
||| || |||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
20051823 |
caaggttaaaagtggttcaagtgttgctgtgtttggtcttggagctgttggcttaggggtat |
20051762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 9828179 - 9828218
Alignment:
| Q |
235 |
gataattgttcttctcccttctggttttgctcattcccgt |
274 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9828179 |
gataattgctcttctcccatctggttttgctcattcccgt |
9828218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 23252960 - 23252920
Alignment:
| Q |
234 |
tgataattgttcttctcccttctggttttgctcattcccgt |
274 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
23252960 |
tgataattgcttttctcccatctggttttgctcattcccgt |
23252920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 28992536 - 28992496
Alignment:
| Q |
234 |
tgataattgttcttctcccttctggttttgctcattcccgt |
274 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28992536 |
tgataatttctcttctcccatctggttttgctcattcccgt |
28992496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 959124 - 959080
Alignment:
| Q |
363 |
tttaacgaaaatgagtaaaaatagatgggagaagagaagttatct |
407 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
959124 |
tttaacggaaatgagcaaaaatagatgggagaagagcaattatct |
959080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University