View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_11 (Length: 503)

Name: NF9954_low_11
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_11
NF9954_low_11
[»] chr4 (5 HSPs)
chr4 (1-487)||(10720909-10721404)
chr4 (1-487)||(10934678-10935173)
chr4 (82-487)||(10687030-10687442)
chr4 (82-487)||(10900670-10901082)
chr4 (1-172)||(9068173-9068345)
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-252)||(39445-39698)
scaffold0008 (244-481)||(39034-39282)
[»] chr2 (3 HSPs)
chr2 (111-236)||(24312785-24312911)
chr2 (111-236)||(20475739-20475864)
chr2 (153-204)||(28644733-28644784)
[»] chr7 (2 HSPs)
chr7 (1-197)||(24815029-24815220)
chr7 (118-197)||(23173894-23173973)
[»] chr3 (1 HSPs)
chr3 (1-74)||(18476238-18476311)
[»] chr8 (2 HSPs)
chr8 (9-197)||(23867314-23867500)
chr8 (124-203)||(19706051-19706133)
[»] chr5 (2 HSPs)
chr5 (362-437)||(25678351-25678426)
chr5 (111-146)||(19005115-19005150)
[»] chr6 (1 HSPs)
chr6 (111-147)||(11122605-11122641)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 10721404 - 10720909
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctgtatatgcctctgatgatcttggaaatgcttcaacatgtccaactatgca 100  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  10721404 tatttctccctgggtttctctgtgaggttgtgctctatctctattccgctgtatatgcctctgatgttcttggaaatgttccaacatgtccaattatgca 10721305  T
Q  101 ttaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaa-ggtatgatt 199  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||    
T  10721304 ttactattattttt-gaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagacgagttcttgtgtttaaatgaaagaaaggtatggtt 10721206  T
Q  200 gtatcccactagtttgtctatatgatctcatattgttctattcaagaaataatcaaatctctttgtctgtgagaatcatttttgtgtgtcccaatctact 299  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||| |||||||||||| |    
T  10721205 gtatcccactagtctgtctatatgatcccatattgttctattcaagaaataataaaatctctttgtctgcgagaatcaatattgtttgtcccaatctatt 10721106  T
Q  300 gatggatctgagtactcaacagctggtggcagtttttctaaccttgtgtggatgaag---------aaaaatataatgttgaacaaggtgttccaacatt 390  Q
    | |||||||||||||||| |||||||||| |||| |||||||||||||||| | |||         || | |||||||||||||||| ||||| ||||||    
T  10721105 gttggatctgagtactcagcagctggtggtagttgttctaaccttgtgtgggtaaagtaatgttaaaagagtataatgttgaacaagatgttcaaacatt 10721006  T
Q  391 acgttgggtcaatatgagtacaattgatattctcaagaatattatcctgaataacgggacgctagccctggaaagaaagctgatgaaggagtttatg 487  Q
      ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||  |||| | | |||| ||||||||||||| |||||||| |||||    
T  10721005 gtgttgggtcaatttgagtacaattcatattctcaagaatactatgctgaatagtgggatgttggcccgggaaagaaagctggtgaaggagcttatg 10720909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 10935173 - 10934678
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctgtatatgcctctgatgatcttggaaatgcttcaacatgtccaactatgca 100  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||    
T  10935173 tatttctccctgggtttctctgtgaggttgtgctctatctctattccgctgtatatgcctctgatgttcttggaaatgttccaacatgtccaattatgca 10935074  T
Q  101 ttaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaa-ggtatgatt 199  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||    
T  10935073 ttactattattttt-gaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagacgagttcttgtgtttaaatgaaagaaaggtatggtt 10934975  T
Q  200 gtatcccactagtttgtctatatgatctcatattgttctattcaagaaataatcaaatctctttgtctgtgagaatcatttttgtgtgtcccaatctact 299  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||| |||||||||||| |    
T  10934974 gtatcccactagtctgtctatatgatcccatattgttctattcaagaaataataaaatctctttgtctgcgagaatcaatattgtttgtcccaatctatt 10934875  T
Q  300 gatggatctgagtactcaacagctggtggcagtttttctaaccttgtgtggatgaag---------aaaaatataatgttgaacaaggtgttccaacatt 390  Q
    | |||||||||||||||| |||||||||| |||| |||||||||||||||| | |||         || | |||||||||||||||| ||||| ||||||    
T  10934874 gttggatctgagtactcagcagctggtggtagttgttctaaccttgtgtgggtaaagtaatgttaaaagagtataatgttgaacaagatgttcaaacatt 10934775  T
Q  391 acgttgggtcaatatgagtacaattgatattctcaagaatattatcctgaataacgggacgctagccctggaaagaaagctgatgaaggagtttatg 487  Q
      ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||  |||| | | |||| ||||||||||||| |||||||| |||||    
T  10934774 gtgttgggtcaatttgagtacaattcatattctcaagaatactatgctgaatagtgggatgttggcccgggaaagaaagctggtgaaggagcttatg 10934678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 487
Target Start/End: Complemental strand, 10687442 - 10687030
Alignment:
Q  82 caacatgtccaactatgcattaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaa 181  Q
    |||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || || || |||||||    
T  10687442 caacatgtccaattatgcattactattattttt-gaagatgtacttttgaagtaatgttgaagtttgttactttctttcaagacgatttgttgtgtttaa 10687344  T
Q  182 atgaaagaaggtatgattgtatcccactagtttgtctatatgatctcatattgttctattcaagaaataatcaaatctctttgtctgtgagaatcatttt 281  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |    
T  10687343 atgaaagaaggtatggttgtatcccactagcctgtctatatgatctcatattgttctattcaagaaat-ataaaatctctttgtctgtgagaatcaatat 10687245  T
Q  282 tgtgtgtcccaatctactgatggatctgagtactcaacagctggtggcagtttttctaaccttgtgtggatgaag----------aaaaatataatgttg 371  Q
    ||| | ||||||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||||||||| | |||          || | ||||||||||    
T  10687244 tgtttatcccaatctactgttggatatgagtactcagcagctggtggcagttgttctaa-cttgtgtgggtaaaggaaatgttaaaagagtataatgttg 10687146  T
Q  372 aacaaggtgttccaacattacgttgggtcaatatgagtacaattgatattctcaagaatattatcctgaataacgggacgctagccctggaaagaaagct 471  Q
    |||||| ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||| ||| |||||||  |||| | | ||||  |||||||||||    
T  10687145 aacaagatgttccaacattgtgttaggtcaatttgagtacaattgatattctcaagaatactatgctgaatagtgggatgttggcccgagaaagaaagct 10687046  T
Q  472 gatgaaggagtttatg 487  Q
    | |||||||| |||||    
T  10687045 ggtgaaggagcttatg 10687030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 487
Target Start/End: Complemental strand, 10901082 - 10900670
Alignment:
Q  82 caacatgtccaactatgcattaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaa 181  Q
    |||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || || || |||||||    
T  10901082 caacatgtccaattatgcattactattattttt-gaagatgtacttttgaagtaatgttgaagtttgttactttctttcaagacgatttgttgtgtttaa 10900984  T
Q  182 atgaaagaaggtatgattgtatcccactagtttgtctatatgatctcatattgttctattcaagaaataatcaaatctctttgtctgtgagaatcatttt 281  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |    
T  10900983 atgaaagaaggtatggttgtatcccactagcctgtctatatgatctcatattgttctattcaagaaat-ataaaatctctttgtctgtgagaatcaatat 10900885  T
Q  282 tgtgtgtcccaatctactgatggatctgagtactcaacagctggtggcagtttttctaaccttgtgtggatgaag----------aaaaatataatgttg 371  Q
    ||| | ||||||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||||||||| | |||          || | ||||||||||    
T  10900884 tgtttatcccaatctactgttggatatgagtactcagcagctggtggcagttgttctaa-cttgtgtgggtaaaggaaatgttaaaagagtataatgttg 10900786  T
Q  372 aacaaggtgttccaacattacgttgggtcaatatgagtacaattgatattctcaagaatattatcctgaataacgggacgctagccctggaaagaaagct 471  Q
    |||||| ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||| ||| |||||||  |||| | | ||||  |||||||||||    
T  10900785 aacaagatgttccaacattgtgttaggtcaatttgagtacaattgatattctcaagaatactatgctgaatagtgggatgttggcccgagaaagaaagct 10900686  T
Q  472 gatgaaggagtttatg 487  Q
    | |||||||| |||||    
T  10900685 ggtgaaggagcttatg 10900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 9068345 - 9068173
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctgta---tatgcctctgatgatcttggaaatgcttcaacatgtccaactat 97  Q
    ||||||||||| || |||||||||||||| |||| |||||||||  ||||||    ||||||||||||| ||||||| ||| | |||||||||||| |||    
T  9068345 tatttctcccttggattctctgtgaggctaggttttatctctatgtcgctgttgtgtatgcctctgatgttcttggagatgttccaacatgtccaaatat 9068246  T
Q  98 gcattaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttct 172  Q
    |||||| ||||  ||||||||||  |||||||||||||||| ||||||||||||||  | || ||||||||||||    
T  9068245 gcattactatt--tttttgaagacattcttttgaagtaatgttgaagtttgttactgacctttaagatgagttct 9068173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39698 - 39445
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctg---tatatgcctctgatgatcttggaaatgcttcaacatgtccaactat 97  Q
    ||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||   | ||| ||||||||| ||||||| ||| |||||||||||||| |||    
T  39698 tatttctcccttggtttttctatgaggctgggttctatctttattctgctgctatgtattcctctgatgttcttggacatgtttcaacatgtccaaatat 39599  T
Q  98 gcattaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatga 197  Q
    |||||| |||||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |    
T  39598 gcattactattattttt-gaagtcgttcttttggagtaatgctgaagtttgttactttctttcaagatgagttcttgtgtttaaatgaaagaatgtataa 39500  T
Q  198 ttgtatcccactagtttgtctatatgatctcatattgttctattcaagaaataat 252  Q
    ||||||||  ||||||||| | |||||||||| |||||| |||| ||||||||||    
T  39499 ttgtatccatctagtttgtttttatgatctcaaattgttatattaaagaaataat 39445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 244 - 481
Target Start/End: Complemental strand, 39282 - 39034
Alignment:
Q  244 agaaataatcaaatctctttgtctgtgagaatcatttttgtgtgtcccaatctactgatggatctgagtactcaacagctggtggcagtttttctaacct 343  Q
    ||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||  || ||||||||||||| ||||||||||||||| |||||||||    
T  39282 agaaagaatcaaatctctttgtttgtgagaatcaattttatgtgtcccaatctacttgtgaatctgagtactcagcagctggtggcagttgttctaacct 39183  T
Q  344 tgtgtggatgaag-----------aaaaatataatgttgaacaaggtgttccaacattacgttgggtcaatatgagtacaattgatattctcaagaatat 432  Q
    | ||||| |||||           |||| |||||||||||||||  ||||||| |||| | |||||||||| ||||||||||| |||||||||||||||     
T  39182 tctgtgggtgaaggaaatgataaaaaaagtataatgttgaacaacatgttccatcattgctttgggtcaatttgagtacaatttatattctcaagaatac 39083  T
Q  433 tatcctgaataacgggacgctagccctggaaagaaagctgatgaaggag 481  Q
    |||||||||||  ||||| |||| ||||||||||||| || ||||||||    
T  39082 tatcctgaatagtgggacactagtcctggaaagaaagatggtgaaggag 39034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 24312785 - 24312911
Alignment:
Q  111 tttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatgattgtat-cccact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||| ||    
T  24312785 tttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttgtgttaaaatgaaagaaggtatgagtgtatcccctct 24312884  T
Q  210 agtttgtctatatgatctcatattgtt 236  Q
    ||||| ||| |||||||||||||||||    
T  24312885 agtttatctgtatgatctcatattgtt 24312911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 20475739 - 20475864
Alignment:
Q  111 tttttgaagatgttcttttg-aagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatgattgtatcccact 209  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  20475739 tttttgaagatgtttttttttaagtaatgctgaagtttgttactttctttcaagatgagttcttgtgttaaaatgaaa-aaggtatgattgtatccctct 20475837  T
Q  210 agtttgtctatatgatctcatattgtt 236  Q
    ||||||||| |||||||| | ||||||    
T  20475838 agtttgtctgtatgatctaagattgtt 20475864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 28644733 - 28644784
Alignment:
Q  153 tttctttcaagatgagttcttatgtttaaatgaaagaaggtatgattgtatc 204  Q
    ||||||||  ||||||| |||||||| || ||||||||||||||||||||||    
T  28644733 tttctttcgtgatgagtacttatgttaaagtgaaagaaggtatgattgtatc 28644784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24815220 - 24815029
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctgt---atatgcctctgatgatcttggaaatgcttcaacatgtccaactat 97  Q
    ||||||||||||  ||| ||| |||||||||||||||||||||||||||||    |||||||||||||| ||| |   ||| | |||||||||||  | |    
T  24815220 tatttctccctgaatttttctatgaggctgggttctatctctattccgctgctgcatatgcctctgatgttctggatgatgttccaacatgtccattt-t 24815122  T
Q  98 gcattaatattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatga 197  Q
    ||||||       ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || | |||| |||||||||||||    
T  24815121 gcatta-------tttttgaagatgttcttttaaagtaatgttgaagtttgttactttctttcaagatgagttcttgtgataaaattaaagaaggtatga 24815029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 23173894 - 23173973
Alignment:
Q  118 agatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatga 197  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23173894 agatattcttttgaagtaatgttgaagtttgttactttctttcaagatgagttcttgtgttaaaatgaaagaaggtatga 23173973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18476311 - 18476238
Alignment:
Q  1 tatttctccctgggtttctctgtgaggctgggttctatctctattccgctgtatatgcctctgatgatcttgga 74  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18476311 tatttctccctggatttctctatgaggctgggttctatctctattccgctgtatatggctctgatgatcttgga 18476238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 23867314 - 23867500
Alignment:
Q  9 cctgggtttctctgtgaggctgggttctatctctattccgctg-----tatatgcctctgatgatcttggaaatgcttcaacatgtccaactatgcatta 103  Q
    ||||||||| |||||||||||||||||||||||||||| ||||     ||| |  |||||||| ||| |   ||| |  ||||||||||| |||||||||    
T  23867314 cctgggtttttctgtgaggctgggttctatctctattctgctgctgcatatgtctctctgatgttctggatgatgttcgaacatgtccaattatgcatta 23867413  T
Q  104 atattattttttgaagatgttcttttgaagtaatgctgaagtttgttactttctttcaagatgagttcttatgtttaaatgaaagaaggtatga 197  Q
     |       || ||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  23867414 gt-------ttggaagatgttattttgaaataatgttaaagtttgttactttctttcaagatgagttcttgtgttaaaatgaaataaggtatga 23867500  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 19706051 - 19706133
Alignment:
Q  124 tcttttgaagtaatgctgaagtttgtt---actttctttcaagatgagttcttatgtttaaatgaaagaaggtatgattgtat 203  Q
    ||||||||||||||| |||||||| ||   ||||| ||||| |||||||||||||||  || ||||||||||||||| |||||    
T  19706051 tcttttgaagtaatgttgaagtttctttttactttttttcatgatgagttcttatgtcaaagtgaaagaaggtatgactgtat 19706133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 25678426 - 25678351
Alignment:
Q  362 tataatgttgaacaaggtgttccaacattacgttgggtcaatatgagtacaattgatattctcaagaatattatcc 437  Q
    |||||||||||||||| |||||||||||| |||||  ||||| ||||||||||| |||||||||||| || |||||    
T  25678426 tataatgttgaacaagatgttccaacattccgttgtttcaatttgagtacaattaatattctcaagagtactatcc 25678351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 19005115 - 19005150
Alignment:
Q  111 tttttgaagatgttcttttgaagtaatgctgaagtt 146  Q
    |||||||||||||||||||||||||||| |||||||    
T  19005115 tttttgaagatgttcttttgaagtaatgttgaagtt 19005150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 11122641 - 11122605
Alignment:
Q  111 tttttgaagatgttcttttgaagtaatgctgaagttt 147  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  11122641 tttttgaacatgttcttttgaagtaatgttgaagttt 11122605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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