View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_12 (Length: 499)
Name: NF9954_low_12
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 3745001 - 3745471
Alignment:
| Q |
18 |
aatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgt |
117 |
Q |
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| T |
3745001 |
aatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgt |
3745100 |
T |
|
| Q |
118 |
gatgatgtcttctccacattgtcatctgaaagatccatcatctggtgcaaagcgtgtagcactggagcatctaaacccatcaacctgaaatccattctca |
217 |
Q |
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| T |
3745101 |
gatgatgtcttctccatattgtcatctgaaaggtccatcatttggtgaagagcgtgtagcactggagcatccaaacccatcaacctgaaatccattctca |
3745200 |
T |
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| Q |
218 |
cactttttcttgattttcttctactttgatgaaaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaagnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745201 |
cactttttcttgattttcttctactttgatgaaaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaag-aaaa |
3745299 |
T |
|
| Q |
318 |
nnnctagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745300 |
aaactagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacatt |
3745399 |
T |
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| Q |
418 |
ccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgacttttggtcaatcctctctg |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745400 |
ccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgacttttggtcaatcctctctg |
3745471 |
T |
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