View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_13 (Length: 481)
Name: NF9954_low_13
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Complemental strand, 55956254 - 55955802
Alignment:
| Q |
10 |
acatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcac |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956254 |
acatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcac |
55956155 |
T |
|
| Q |
110 |
taccacttaatgttactaaaacagctttttctttggtaagtacctttgtttcaagagcagcatttggtaaaaaatctaaatatgaagatgaacttttgag |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956154 |
taccacttaatgttactaaaacagctttttctttggtaagtacctttgtttcaagagcagcatttggtaaaaaatctaaatatgaagatgaacttttgag |
55956055 |
T |
|
| Q |
210 |
tttgctcaagcaaacagtggaaatggcaagtgggtttgaccctgctgatctgttcccttcatttaaacctattcatattatcactcggacgaaagctaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55956054 |
tttgctcaagcaaacagtggaaatggcaagtgggtttgaccctgctgatctgttcccttcatttaaacctattcatcttatcactcggacgaaagctaaa |
55955955 |
T |
|
| Q |
310 |
ttgcagaatatgcaaaagaagctggataagattttagaaagcattatcaaagagcatcaatcaaattcaatccatggcaaacagggtgaaaatctagttg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55955954 |
ttgcagaatatgcaaaagaagctggataagattttagaaagcattatcaaagagcatcaatcaaattcaatccatggcaaacagggtgaaaatctagttg |
55955855 |
T |
|
| Q |
410 |
atgttcttttgcgcgttcagcaaagtgacaatttcgatatccctatcacagac |
462 |
Q |
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| T |
55955854 |
atgttcttttgcgcgttcagcaaagtgacaatttcgatatccctatcacagac |
55955802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 55959685 - 55959269
Alignment:
| Q |
23 |
ttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgt |
122 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
55959685 |
ttagtgctaaaagggttcaatctttttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgt |
55959586 |
T |
|
| Q |
123 |
tactaaaacagctttttctttggtaagtacctttgtttcaagagcagcatttggtaaaaaatctaaatatgaagatgaacttttgagtttgctcaagcaa |
222 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| | ||||||||||| || |
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| T |
55959585 |
tactaaaatagctttctctttggtaagtacctttgtttcaagagcggcgtttggttaaaaatctaaatatgaagatgaacttctatgtttgctcaaggaa |
55959486 |
T |
|
| Q |
223 |
acagtggaaatggcaagtgggtttgaccctgctgatctgttcccttcatttaaacctattcatattatcactcggacgaaagctaaattgcagaatatgc |
322 |
Q |
| |
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||||||||||||| ||||| || || || |||| ||||| ||||||| ||| |||||||| |||| ||| |||| ||||||| |||||||| ||||| |
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| T |
55959485 |
tcagtggaaatggcgagtggtttcgatgttgttgatttgttcgcttcattcaaagctattcattttattactaggactaaagctagattgcagagtatgc |
55959386 |
T |
|
| Q |
323 |
aaaagaagctggataagattttagaaagcattatcaaagagcatcaatcaaattcaatccat---ggcaaacagggtgaaaatctagttgatgttctttt |
419 |
Q |
| |
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| |||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||| || | ||||||| |||||||||||||||| |
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| T |
55959385 |
agaagaagtcggataaaattttagaaagcattatcaacgagcatcaaacaaattcaatccatgccggcatgcaagatgaaaatttagttgatgttctttt |
55959286 |
T |
|
| Q |
420 |
gcgcgttcagcaaagtg |
436 |
Q |
| |
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||||||||| ||||||| |
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| T |
55959285 |
gcgcgttcaacaaagtg |
55959269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 12426584 - 12426217
Alignment:
| Q |
10 |
acatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactt---- |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| ||||| || | ||| |
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|
| T |
12426584 |
acatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaattcattca--ttcctcttcttg |
12426487 |
T |
|
| Q |
106 |
tcacta-ccacttaatgttactaaaacagctttttctttggtaagtacctttgtttcaagagcagcatttggtaaaaaatctaaatatgaagatgaactt |
204 |
Q |
| |
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||| | |||||| || ||||||||| | | ||||||||||||| ||||||||||||| ||| | ||||||||||||||||| ||||||||||| || |
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| T |
12426486 |
tcaagatccacttgatcttactaaaatggttagttctttggtaagttcctttgtttcaagggcaacttttggtaaaaaatctaagtatgaagatgatctg |
12426387 |
T |
|
| Q |
205 |
ttgagtttgctcaagcaaacagtggaaatggcaagtgggtttgaccctgctgatctgttcccttcatttaaacctattcatattatcactcggacgaaag |
304 |
Q |
| |
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||| |||||||||||||| || |||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||| | || ||| ||| ||| |
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| T |
12426386 |
ttgtgtttgctcaagcaagcaatggaaatggcaagtggttttgatgttgctgatttgtttccttcatttaaacctattcatttaattactgggataaaac |
12426287 |
T |
|
| Q |
305 |
ctaaattgcagaatatgcaaaagaagctggataagattttagaaagcattatcaaagagcatcaatcaaa |
374 |
Q |
| |
|
| |||||| ||||| ||||||||||| |||||| |||||||||||||||||| || |||||||||||||| |
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| T |
12426286 |
caaaattggagaatttgcaaaagaagttggatatgattttagaaagcattataaacgagcatcaatcaaa |
12426217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 12266236 - 12266657
Alignment:
| Q |
10 |
acatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactt---- |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| ||||| || ||||| |
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| T |
12266236 |
acatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaattcattca--ttccacttcttg |
12266333 |
T |
|
| Q |
106 |
tcacta-ccacttaatgttactaaaacagctttttctttggtaagtacctttgtttcaagagcagcatttggtaaaaaatctaaatatgaagatgaactt |
204 |
Q |
| |
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||| | |||||| || || |||||| | ||||||||||||| ||||| ||||||| ||| | ||||||||||||||||| ||||||||||||||| |
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| T |
12266334 |
tcaagatccacttgatctttctaaaatgattagttctttggtaagttcctttatttcaagggcaacttttggtaaaaaatctaagtatgaagatgaactt |
12266433 |
T |
|
| Q |
205 |
ttgagtttgctcaagcaaacagtggaaatggcaagtgggtttgaccctgctgatctgttcccttcatttaaacctattcatattatcactcggacgaaag |
304 |
Q |
| |
|
||| |||||||||||||| || ||||||||| || | ||||| | ||||| |||||||||||||||||||||||||| | || | | ||| |||| |
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|
| T |
12266434 |
ttgtgtttgctcaagcaatcaatggaaatggtaaattattttgatgtttctgatgtgttcccttcatttaaacctattcatttcattagtgggatgaaac |
12266533 |
T |
|
| Q |
305 |
ctaaattgcagaatatgcaaaagaagctggataagattttagaaagcattatcaaagagcatcaatcaaattcaatccatggcaaacagggtgaaaatct |
404 |
Q |
| |
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||| |||| ||||| | ||||||||| | |||| |||||| |||| ||||| || | |||||||||||| ||||| | || ||||||||| | |
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| T |
12266534 |
ctagattgaagaattttcaaaagaagttagatatgatttttgaaaaaattataaacgcgcatcaatcaaa------ccatgacctgcaaggtgaaaatat |
12266627 |
T |
|
| Q |
405 |
agttgatgttcttttgcgcgttcagcaaag |
434 |
Q |
| |
|
||||||||||||| ||||| |||||||||| |
|
|
| T |
12266628 |
agttgatgttcttctgcgcattcagcaaag |
12266657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 7140708 - 7140753
Alignment:
| Q |
20 |
ttcttagtgctaaaagggttcattatttttcttccattagagaaga |
65 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||| |||||||||||| |
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|
| T |
7140708 |
ttctaagtgctaaaagggttcaatctttttcttacattagagaaga |
7140753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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