View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_15 (Length: 477)
Name: NF9954_low_15
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 278 - 459
Target Start/End: Complemental strand, 41327667 - 41327486
Alignment:
| Q |
278 |
acgatgtgacaatcgaggtccacgtggtaccaaatatgacatggcatgtcacgtcaacatgcaaaattatcacttagatgtaaatctactacaaattata |
377 |
Q |
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| T |
41327667 |
acgatgtgacaatcgaggtccacgtggtatcaaatatgacgtggcatgtcacgtcaacatgcaaaattatcacttagatgtaaatctaccacaaattata |
41327568 |
T |
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| Q |
378 |
tccgagactaaaacaatgaaacttttaaattataggaacgaaatctaccacaaataattggaagaagtaaaaccatcaattg |
459 |
Q |
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| T |
41327567 |
tccgagactaaaacaatgaaacttttaaattataggaacaaaatctaccacaaataattggaagaagtaaaaccatcaattg |
41327486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 41328027 - 41327889
Alignment:
| Q |
2 |
ggttgaaaacattatttcacattgacgacaaatttcacatttttgtagtatatgcaaaatagtagaaaaaatagagaagattgacaaaatacattacttc |
101 |
Q |
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| T |
41328027 |
ggttgaaaacattatttcacattgacaacaaatttcacatttttttagtatatgcaaaatagtagaaaaaatagagaatattgacaaaatacattacttc |
41327928 |
T |
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| Q |
102 |
acattcacggcaaatttgcatttgcaataactaaagatg |
140 |
Q |
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| T |
41327927 |
acattcacgacaaatttgcatttgcaataactaaagatg |
41327889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 235 - 361
Target Start/End: Complemental strand, 41327795 - 41327669
Alignment:
| Q |
235 |
cctaccacgtgaaagtcacttattgtttgctaacatgactttaacgatgtgacaatcgaggtccacgtggtaccaaatatgacatggcatgtcacgtcaa |
334 |
Q |
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| T |
41327795 |
cctaccacgtgaaagtcacttattgtttgctaacatgacattgacgatgtgacaatcgaggtccacgtggtaccaaaaatgatgtggtatgtcacgtcaa |
41327696 |
T |
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| Q |
335 |
catgcaaaattatcacttagatgtaaa |
361 |
Q |
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| T |
41327695 |
catgcaaaattatcacttagatgtaaa |
41327669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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