View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_18 (Length: 460)
Name: NF9954_low_18
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 42205640 - 42205189
Alignment:
| Q |
5 |
tacttgttgcggccacaggtgcgtatcacacacacac------tgaccatgtctccatcgacactttgatagatatgatatgttaatcatgtgataggaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205640 |
tacttgttgcggccacaggtgcgtatcacacacacacacacactgaccatgtctccatcgacactttgatagatatgatatgttaatcatgtgataggaa |
42205541 |
T |
|
| Q |
99 |
aagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattgttgattttatatctatgttagacatttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205540 |
aagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattgttgattttatatctatgttagacatttg |
42205441 |
T |
|
| Q |
199 |
tcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205440 |
tcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatct |
42205341 |
T |
|
| Q |
299 |
tccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205340 |
tccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtctt |
42205241 |
T |
|
| Q |
399 |
ttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
450 |
Q |
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| T |
42205240 |
ttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
42205189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 42214508 - 42214057
Alignment:
| Q |
5 |
tacttgttgcggccacaggtgcgtatcacacacacac------tgaccatgtctccatcgacactttgatagatatgatatgttaatcatgtgataggaa |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214508 |
tacttgttgcggccacaggtgcgtatcacacacacacacacactgaccatgtctccatcgacactttgatagatatgatatgttaatcatgtgataggaa |
42214409 |
T |
|
| Q |
99 |
aagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattgttgattttatatctatgttagacatttg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214408 |
aagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattgttgattttatatctatgttagacatttg |
42214309 |
T |
|
| Q |
199 |
tcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214308 |
tcatgactcatactcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatct |
42214209 |
T |
|
| Q |
299 |
tccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214208 |
tccatatatatggctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtctt |
42214109 |
T |
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| Q |
399 |
ttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42214108 |
ttgactttgttatgttttttccttttgcagtaatagattcccctactctgtg |
42214057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 31720906 - 31720948
Alignment:
| Q |
65 |
tgatagatatgatatgttaatcatgtgataggaaaagagagat |
107 |
Q |
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|||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
31720906 |
tgatagatgtgatatgttaatgatgtgataggtaaagagagat |
31720948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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