View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_2 (Length: 819)

Name: NF9954_low_2
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_2
NF9954_low_2
[»] chr1 (2 HSPs)
chr1 (196-808)||(45593540-45594161)
chr1 (17-162)||(45593394-45593539)


Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 196 - 808
Target Start/End: Original strand, 45593540 - 45594161
Alignment:
Q  196 catgcatttttcaaaaatgaagatatcacaaaaaggttgagaaaac-----taactatt----ctaccatatatcagagtatttgcctttctctattgaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    |||||||||||||||||||||||||||||||||||||    
T  45593540 catgcatttttcaaaaatgaagatatcacaaaaaggttgagaaaactaaactaactattctacctaccatatatcagagtatttgcctttctctattgaa 45593639  T
Q  287 gagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcaccgtgataccaaacacgcacttagtcacatcta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  45593640 gagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcattgtgataccaaacacgcacttagtcacatcta 45593739  T
Q  387 ccatcaaggagattcaagaaattgtcggtatgtcccaggaaacctatttcatcgggcatacgcagtaggtgcttcagtgcagaatcagaagtatcaagaa 486  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  45593740 ccatcaaggagattcaagaaattgtcagtatgtcccaggaaacctatttcatcaggcatgcgcagtaggtgcttcagtgcagaatcagaagtatcaagaa 45593839  T
Q  487 attcataatttcctgaatctgaaccagatatatcatcttcaatcttcagtttgtagctactggcattttgttcctgaatcaggttgacatcttcaagctt 586  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45593840 attcataatttcctgaatctgaaccagatatatcatcttcaagcttcagtttgtagctactggcattttgttcctgaatcaggttgacatcttcaagctt 45593939  T
Q  587 tggtgttgacactttcaggctttgtgttccgttgtttttcacctgcaatgagacatctgaacatgattcctccaatgagacgatgctttgacacactact 686  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45593940 tggtgttgacactttcaggctttgtgttcggttgtttttcacctgcaatgagacatctgaacatgattcctccaatgagacgatgctttgacacactact 45594039  T
Q  687 cctgcacgaaatttctctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcgtagagcctgaattaagcaaagtggactcca 786  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45594040 cctgcacggaatttgtctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcgtagagcctgaattaagcaaagtggactcca 45594139  T
Q  787 acgacagcctcgtctctgcttc 808  Q
    ||||||||||||||||||||||    
T  45594140 acgacagcctcgtctctgcttc 45594161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 45593394 - 45593539
Alignment:
Q  17 ataacaaaacacagatcatcatgaaacctgggacattataattacacataatcaacagttgttgaagaacgtgaacaaaatcactagttgttaatccatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45593394 ataacaaaacacagatcatcatgaaacctgggacattataattacacataatcaacagttgttgaaggacgtgaacaaaatcactagttgttaatccatt 45593493  T
Q  117 gatctaaccattctctgtccacccttttccccctctaaacatggac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45593494 gatctaaccattctctgtccacccttttccccctctaaacatggac 45593539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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