View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_20 (Length: 448)
Name: NF9954_low_20
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_20 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 141 - 429
Target Start/End: Complemental strand, 31031808 - 31031520
Alignment:
| Q |
141 |
aattacattggtgatcctgtattttcagcatatttttgaatacttcactgaaagaactcctcggtcgtattttgaagaaagggaagcttcccttgtatgg |
240 |
Q |
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| T |
31031808 |
aattacattggtgatcctgtattttcagcatatttttgaatacttcactgaaagaactcctcggtcgtattttgaagaaagggaagcttcccttgtatgg |
31031709 |
T |
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| Q |
241 |
aattacagacatgcaggtacttaagttgtgtttaaaaagacgtgnnnnnnngttttgcatgttgttctccagttactaattctctcacacaatcatagat |
340 |
Q |
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| T |
31031708 |
aattacagacatgcaggtacttaagttgtgtttaaaaagacgtgtttttttgttttgcatgttgttctccagttactaattctctcacacaatcatagat |
31031609 |
T |
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| Q |
341 |
gttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggtccaatttcaaatgcatcagttgaagttgttcaagg |
429 |
Q |
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| T |
31031608 |
gttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggtccaatttcaaatgcatcagttgaagttgttcaagg |
31031520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31031948 - 31031864
Alignment:
| Q |
1 |
gtttctaaacccttcaaatggagaatggatgactacaatgccagaacaactaaacatggaatgggttgacagtgtaaaggtgctt |
85 |
Q |
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| T |
31031948 |
gtttttaaacccttcaaatggagaatggatgactacaatgccagaacaactaaacatggaatgggttgacagtgtaaaggtgctt |
31031864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 86359 - 86267
Alignment:
| Q |
337 |
agatgttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggtccaatttcaaatgcatcagttgaagttgttcaagg |
429 |
Q |
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| T |
86359 |
agatgttgaatttggcaaacttcaagcaagagacatgctccaacatctgtggacaggtccgatttctaattcatcagttgaagttgttcaagg |
86267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 431
Target Start/End: Original strand, 36382663 - 36382758
Alignment:
| Q |
336 |
tagatgttgagtttgggaaacttcaagcaagggacatgctccaacatctctgcacaggtccaatttcaaatgcatcagttgaagttgttcaaggtg |
431 |
Q |
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| T |
36382663 |
tagatgttgagtttggaaggcttcaagcaagagaccttcttcagcatctttggacaggcccaatatcaaatgcatctcttgatgttgtccaaggtg |
36382758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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