View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_22 (Length: 441)
Name: NF9954_low_22
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_22 |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 55 - 429
Target Start/End: Original strand, 2433933 - 2434322
Alignment:
| Q |
55 |
atgtatgaaattctccatcttttaatttagtttggaattgcatctgtgtgtttaccttannnnnnnnnnnnnnnnnntgattttcgaatgtttcaatcac |
154 |
Q |
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| T |
2433933 |
atgtatgaaattctccatcttttaatttagtttggaattgcatcagtgtgtttaattgtttaccttaatatatatattgattttcgaatgtttcaatcac |
2434032 |
T |
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| Q |
155 |
tttttt-acttaacaatagtagttgctgctccttgtactaaaagatgcgccgatttctcattttacaaataatccacaccaccgctaaccaaataatatg |
253 |
Q |
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| T |
2434033 |
tttttttacttaacaatagtagttgctgctccttgtactaaaagatgcgccgatttttctttttacaaataatctacaccaccgctaaccaaataatatg |
2434132 |
T |
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| Q |
254 |
aagagtcaa--------------tgatagaatatgatcatataagtgactctgagtaactatcgagaaacctaacaaacctgagactaaggaccaaagat |
339 |
Q |
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| T |
2434133 |
aagagtcatcctaaccaccaaactgatacaatatgatcatataagtgaccctgagtaactatcgagaaacctaacaaacttgagactaaggaccaaagat |
2434232 |
T |
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| Q |
340 |
taccataaaattcgtatctcacaaataaatggcccctttcttcattgataccacaagctcaagaacatattttcccgttgttgtcagaac |
429 |
Q |
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| T |
2434233 |
taccataaaattcgtatctcacaaataaatggcccctttcttcattgataccacaagctcaagaacatattttctcgttgttgtcagaac |
2434322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 1913700 - 1913592
Alignment:
| Q |
303 |
gagaaacctaacaaacctgagactaaggaccaaagattaccataaaattcgtatctcacaaataaatggcccctttcttcattgataccacaagctcaag |
402 |
Q |
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| T |
1913700 |
gagaaacctaaccaacctgagaccaaggaccaaagtgtaccataaaaatcgcatttaaaaaataagtggtcgctatcttcattcatgccacaagctccac |
1913601 |
T |
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| Q |
403 |
aacatattt |
411 |
Q |
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| T |
1913600 |
aacatattt |
1913592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 11770 - 11806
Alignment:
| Q |
219 |
caaataatccacaccaccgctaaccaaataatatgaa |
255 |
Q |
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| T |
11770 |
caaatcatccacaccaccgctaaccaaataatatgaa |
11806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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