View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_23 (Length: 439)

Name: NF9954_low_23
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_23
NF9954_low_23
[»] chr4 (9 HSPs)
chr4 (25-430)||(40008241-40008646)
chr4 (90-141)||(56480341-56480392)
chr4 (89-142)||(23819081-23819134)
chr4 (89-142)||(36722694-36722747)
chr4 (60-142)||(2996565-2996644)
chr4 (88-139)||(3175946-3175997)
chr4 (88-125)||(6130707-6130744)
chr4 (97-142)||(28252222-28252267)
chr4 (89-134)||(47800623-47800668)
[»] chr5 (5 HSPs)
chr5 (88-176)||(10296372-10296457)
chr5 (89-133)||(17258908-17258952)
chr5 (100-142)||(14257457-14257499)
chr5 (89-142)||(4855690-4855743)
chr5 (98-142)||(18543230-18543274)
[»] chr7 (10 HSPs)
chr7 (91-134)||(1350269-1350312)
chr7 (90-142)||(30456476-30456528)
chr7 (89-141)||(46104592-46104644)
chr7 (98-140)||(36370663-36370705)
chr7 (88-142)||(40439046-40439100)
chr7 (90-127)||(27378854-27378891)
chr7 (89-142)||(31338500-31338553)
chr7 (89-142)||(44151505-44151558)
chr7 (88-141)||(44821952-44822005)
chr7 (89-141)||(3610765-3610817)
[»] chr2 (12 HSPs)
chr2 (88-141)||(9477945-9477998)
chr2 (90-142)||(15377757-15377809)
chr2 (89-141)||(43985028-43985080)
chr2 (89-140)||(4026811-4026862)
chr2 (89-139)||(10563583-10563633)
chr2 (88-142)||(36863649-36863703)
chr2 (89-134)||(44644278-44644323)
chr2 (89-141)||(1899934-1899986)
chr2 (89-137)||(6988112-6988160)
chr2 (140-176)||(13864589-13864625)
chr2 (90-142)||(39983334-39983386)
chr2 (98-142)||(43141863-43141907)
[»] chr1 (12 HSPs)
chr1 (93-142)||(25005826-25005875)
chr1 (89-142)||(27887143-27887196)
chr1 (89-141)||(43332477-43332529)
chr1 (89-140)||(37842380-37842431)
chr1 (88-142)||(7218098-7218152)
chr1 (89-127)||(38651456-38651494)
chr1 (98-139)||(2778661-2778702)
chr1 (89-142)||(30257675-30257728)
chr1 (103-140)||(44940335-44940372)
chr1 (89-141)||(4700091-4700143)
chr1 (89-141)||(34290229-34290281)
chr1 (98-177)||(50319230-50319306)
[»] scaffold0020 (1 HSPs)
scaffold0020 (100-142)||(160009-160051)
[»] chr8 (5 HSPs)
chr8 (182-220)||(8062208-8062246)
chr8 (88-134)||(39551233-39551279)
chr8 (89-142)||(6509328-6509381)
chr8 (89-142)||(10075576-10075629)
chr8 (89-141)||(9956839-9956891)
[»] chr6 (6 HSPs)
chr6 (88-138)||(25100039-25100089)
chr6 (89-142)||(1497973-1498026)
chr6 (92-125)||(29837112-29837145)
chr6 (89-142)||(33911307-33911360)
chr6 (89-141)||(26694871-26694923)
chr6 (89-141)||(31812038-31812090)
[»] chr3 (7 HSPs)
chr3 (88-142)||(24158527-24158581)
chr3 (89-139)||(40665424-40665474)
chr3 (89-134)||(20502093-20502138)
chr3 (89-142)||(52618995-52619048)
chr3 (89-141)||(1816576-1816628)
chr3 (89-141)||(34382935-34382987)
chr3 (89-174)||(36887463-36887549)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 25 - 430
Target Start/End: Complemental strand, 40008646 - 40008241
Alignment:
Q  25 agtcagcctactcgagagaactcacggaaatagccatgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaa 124  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008646 agtcagcctactcgagagaactcatggaaatagccatgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaa 40008547  T
Q  125 acaccttataacttatattttaccttttgttacagaaataggttatacataagatcttatgataaatgcttatagcgtaagtgcttaattaagttgttta 224  Q
    |  |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  40008546 attccttataacttacattttaccttttgttacagaaataggttatacataagctcttatgataaatggttatagcgcaagtgcttaattaagttgttta 40008447  T
Q  225 ttccatcagggctaagtatccattcctaccagttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctca 324  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008446 ttcaatcagggctaagtatccattcctaccagttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctca 40008347  T
Q  325 tggttgaatcttttactaagcaataatatgttttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaaccctt 424  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008346 ttgttgaatcttttactaagcaataatatgttttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaaccctt 40008247  T
Q  425 ctgtgc 430  Q
    ||||||    
T  40008246 ctgtgc 40008241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 56480392 - 56480341
Alignment:
Q  90 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||||||||||    
T  56480392 ttattttcataagctctccaagatagtttatgaaaacagcttataacttata 56480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 23819134 - 23819081
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||    
T  23819134 cttatttctataagctcttcaagatagcttatgaaaacatgttataacttatat 23819081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 36722694 - 36722747
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| |||||||||||||||||  |||| |||||| ||||||||||||||    
T  36722694 cttattttcataagctcttcaggataacttatcaaaacaacttataacttatat 36722747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 2996644 - 2996565
Alignment:
Q  60 atgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||||| |||||||||||  ||  ||||||||| ||| ||||| || ||||| ||||||||||| ||||||||||||||    
T  2996644 atgacatgtccataagcttttt--tca-acttattttcatacgctctccaagatagcttatgaaaacaacttataacttatat 2996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 3175997 - 3175946
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataactta 139  Q
    |||||||| || |||| ||||||||||| ||||||||||| |||||||||||    
T  3175997 acttatttctacaagcccttcaggatagcttatgaaaacagcttataactta 3175946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 6130707 - 6130744
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaa 125  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  6130707 acttatttttataagctcgtcaagatagtttatgaaaa 6130744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 28252267 - 28252222
Alignment:
Q  97 tataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||||||| ||||| |||||||||| |||||| ||||||||    
T  28252267 tataagctcttcatgatagcttatgaaaactccttattacttatat 28252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 47800668 - 47800623
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttata 134  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||    
T  47800668 cttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 10296457 - 10296372
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatattttaccttttgttacagaaataggttatacataa 176  Q
    ||||||||| ||||||||| |||   || ||||||||||  |||||| ||||||||||||||||||||| |||||||| ||| ||||||    
T  10296457 acttattttcataagctctccag---agcttatgaaaaccacttatagcttatattttaccttttgttatagaaatagcttacacataa 10296372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 17258908 - 17258952
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttat 133  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  17258908 cttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 14257499 - 14257457
Alignment:
Q  100 aagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  14257499 aagctctccaagatagtttatgaaaacaccttataacttatat 14257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 4855743 - 4855690
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| | |||||||||  |||||||||||||||||| ||||||||||||||    
T  4855743 cttatttctgtaagctctttgggatagtttatgaaaacaacttataacttatat 4855690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 18543230 - 18543274
Alignment:
Q  98 ataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||    
T  18543230 ataagctctccaggatagcttatgaaaacaacttatatcttatat 18543274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 1350269 - 1350312
Alignment:
Q  91 tatttttataagctcttcaggatagtttatgaaaacaccttata 134  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  1350269 tattttcataagctcttcaggatagtttatgaaaacagcttata 1350312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 30456476 - 30456528
Alignment:
Q  90 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| ||||||||| || ||||||||||||||||  ||||||||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatat 30456528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 46104592 - 46104644
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||||||||||| |||| ||||||||||| |||||| ||||||    
T  46104592 cttattttcataagctcttcagcatagcttatgaaaacaacttatagcttata 46104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 36370705 - 36370663
Alignment:
Q  98 ataagctcttcaggatagtttatgaaaacaccttataacttat 140  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  36370705 ataagctcttcaggatagtttatggaaacaacttatagcttat 36370663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 40439100 - 40439046
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||  |||||||||||||||||| | ||||||||| |||||||| |||||    
T  40439100 acttatttccataagctcttcaggatagctaatgaaaacaacttataacatatat 40439046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 27378854 - 27378891
Alignment:
Q  90 ttatttttataagctcttcaggatagtttatgaaaaca 127  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  27378854 ttattttcataagctctccaggatagtttatgaaaaca 27378891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 31338553 - 31338500
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| ||||||||   ||||||||||||| ||||| ||||||||||||||    
T  31338553 cttattttcataagctccataggatagtttatggaaacaacttataacttatat 31338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 44151505 - 44151558
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||  ||||||| |||| ||||||||||||||||| |||||| |||||||    
T  44151505 cttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatat 44151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 44822005 - 44821952
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||||| ||||| ||| ||| |||| ||||||||||| |||||||||||||    
T  44822005 acttattttcataagttctccagaatagcttatgaaaacagcttataacttata 44821952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 3610765 - 3610817
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||| ||||||||||  ||||||||||| ||||||| |||||| ||||||    
T  3610765 cttatttctataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 9477998 - 9477945
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||    
T  9477998 acttattttcataacctctccaggatagcttatgaaaacaacttataacttata 9477945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 15377809 - 15377757
Alignment:
Q  90 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| |||||||| |||| |||| ||||||||||| ||||||||||||||    
T  15377809 ttattttcataagctcctcagaatagcttatgaaaacagcttataacttatat 15377757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 43985028 - 43985080
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||| |||||    
T  43985028 cttattttcataagctcttcaagatagcttatgaaaacaacttataatttata 43985080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 4026862 - 4026811
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttat 140  Q
    |||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||    
T  4026862 cttattttcataagttcttcaggataatttatgaaaacagcttataatttat 4026811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 10563583 - 10563633
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataactta 139  Q
    ||||||||  |||||||||||| |||| ||||||||||| |||||||||||    
T  10563583 cttattttcttaagctcttcagcatagcttatgaaaacaacttataactta 10563633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 36863649 - 36863703
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||| ||||||||| || ||||| |||||||||||  |||||||||||||    
T  36863649 acttattttcataagctctccaagatagcttatgaaaacaatttataacttatat 36863703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 44644323 - 44644278
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttata 134  Q
    |||||||| |||||||||||| |||||||| |||||||| ||||||    
T  44644323 cttattttcataagctcttcaagatagtttttgaaaacagcttata 44644278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 1899986 - 1899934
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||||||||| ||||| || ||||||||||||||||  ||||| ||||||    
T  1899986 cttatttttataaactctttagaatagtttatgaaaacattttatagcttata 1899934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 6988160 - 6988112
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataact 137  Q
    ||||||| ||||| ||||||| ||||| ||||||||||| |||||||||    
T  6988160 cttatttctataaactcttcaagatagcttatgaaaacaacttataact 6988112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 13864625 - 13864589
Alignment:
Q  140 tattttaccttttgttacagaaataggttatacataa 176  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  13864625 tattttaccttttgttatagaaatagcttatacataa 13864589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 39983386 - 39983334
Alignment:
Q  90 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| || |||||| |||||||| ||||||||||| |||||| |||||||    
T  39983386 ttattttcattagctctccaggatagcttatgaaaacaacttatagcttatat 39983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 43141907 - 43141863
Alignment:
Q  98 ataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||| ||||||||||||| ||||||||||| |||||| |||||||    
T  43141907 ataaactcttcaggatagcttatgaaaacatcttatagcttatat 43141863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 25005826 - 25005875
Alignment:
Q  93 tttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||||||||| |||||||| ||||||||||| |||||| |||||||    
T  25005826 tttttataagctctccaggatagcttatgaaaacaacttatagcttatat 25005875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 27887143 - 27887196
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||| |||||||    
T  27887143 cttatttttatatgctctccatgatagtttatgaaaacaacttatagcttatat 27887196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 43332529 - 43332477
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||    
T  43332529 cttattttaataagctcttcaagatagcttatgaaaacagcttacaacttata 43332477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 37842380 - 37842431
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttat 140  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||||| |||||    
T  37842380 cttatttttataagttcttcaagatagcttatgaaaacaacttatagcttat 37842431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 7218098 - 7218152
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||| ||||| ||| |||||||| ||||||||||| |||||| |||||||    
T  7218098 acttattttcataagttctccaggataggttatgaaaacaacttatagcttatat 7218152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 38651456 - 38651494
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaaca 127  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  38651456 cttatttttataagctctccaggatagcttatgaaaaca 38651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 2778702 - 2778661
Alignment:
Q  98 ataagctcttcaggatagtttatgaaaacaccttataactta 139  Q
    |||||||||||| ||||||||||||| ||| |||||||||||    
T  2778702 ataagctcttcaagatagtttatgaatacaacttataactta 2778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 30257728 - 30257675
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||| ||||||| || |||||||||||||||||||| |||| | |||||||    
T  30257728 cttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatat 30257675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 44940372 - 44940335
Alignment:
Q  103 ctcttcaggatagtttatgaaaacaccttataacttat 140  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  44940372 ctcttcaggatagattatgaaaacaacttataacttat 44940335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 4700091 - 4700143
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||||||| ||||||||||||| ||||||  ||||| ||||||    
T  4700091 cttattttcataagctctccaggatagtttataaaaacagtttatagcttata 4700143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 34290281 - 34290229
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||| |||||| ||||| ||||||||||| |||||| ||||||    
T  34290281 cttattttcataagttcttcaagatagcttatgaaaacagcttatagcttata 34290229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 50319306 - 50319230
Alignment:
Q  98 ataagctcttcaggatagtttatgaaaacaccttataacttatattttaccttttgttacagaaataggttatacataag 177  Q
    |||||||||  ||||||| ||||||||||| |||   |||| ||||||| ||||||||| |||||||| |||||||||||    
T  50319306 ataagctctctaggatagcttatgaaaacaacttg--actt-tattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 160009 - 160051
Alignment:
Q  100 aagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||    
T  160009 aagctctttaggatagcttatgaaaacatcttataacttatat 160051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 8062246 - 8062208
Alignment:
Q  182 tatgataaatgcttatagcgtaagtgcttaattaagttg 220  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  8062246 tatgataaacgcttatagtgtaagtgcttaattaagttg 8062208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 39551233 - 39551279
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttata 134  Q
    ||||||||||||||||||| ||||| || ||||||||||| ||||||    
T  39551233 acttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 6509328 - 6509381
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||  ||||||||| |||||||| ||||||||||| |||||| |||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 10075576 - 10075629
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| |||||||||  ||||||| ||||||||| | ||||||||||||||    
T  10075576 cttattttcataagctctctaggatagcttatgaaaatagcttataacttatat 10075629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 9956839 - 9956891
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||| ||| || ||||| ||||||||||| |||||||||||||    
T  9956839 cttattttcataagttctccaagatagattatgaaaacaacttataacttata 9956891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 25100089 - 25100039
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataactt 138  Q
    |||||||| ||||||||||| | ||||| ||||||||||| ||||||||||    
T  25100089 acttatttctataagctctttaagatagcttatgaaaacaacttataactt 25100039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 1498026 - 1497973
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| ||||||||| || ||||||||||||||||  ||||||||| ||||    
T  1498026 cttattttcataagctctccaagatagtttatgaaaacttcttataactcatat 1497973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 29837112 - 29837145
Alignment:
Q  92 atttttataagctcttcaggatagtttatgaaaa 125  Q
    ||||| ||||||||||||||||||||||||||||    
T  29837112 attttcataagctcttcaggatagtttatgaaaa 29837145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 33911307 - 33911360
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| | || || |||||||||||||||||||||| ||||||| ||||||    
T  33911307 cttattttcacaaacttttcaggatagtttatgaaaacagcttataaattatat 33911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 26694923 - 26694871
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||| |||||| |||||||||||||||||  ||||||| ||||    
T  26694923 cttattttcataagttcttcaagatagtttatgaaaacaatttataacatata 26694871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 31812038 - 31812090
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||||||| || ||||| ||||||||||| |||||| ||||||    
T  31812038 cttattttcataagctctccaagatagcttatgaaaacaacttatatcttata 31812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 24158527 - 24158581
Alignment:
Q  88 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    ||||||||  ||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24158527 acttatttccataagctctccaggatagcttatgaaaacagcttattacttatat 24158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 40665474 - 40665424
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataactta 139  Q
    |||||||||||||||||| || ||||  ||||||||||| |||||||||||    
T  40665474 cttatttttataagctctccaagataacttatgaaaacatcttataactta 40665424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 20502093 - 20502138
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttata 134  Q
    |||||| | |||||||||||||||||| ||||||||||| ||||||    
T  20502093 cttattctcataagctcttcaggatagcttatgaaaacagcttata 20502138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 52619048 - 52618995
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 142  Q
    |||||||| | |||||||||| ||||| || |||||||| ||||||||||||||    
T  52619048 cttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatat 52618995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 1816628 - 1816576
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    |||||||| ||||||||| ||| |||| ||||||||||| |||||| ||||||    
T  1816628 cttattttgataagctctccagtatagcttatgaaaacaacttatatcttata 1816576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 34382987 - 34382935
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 141  Q
    ||||||||  |||||| |||||||||| ||||||||| | |||||||||||||    
T  34382987 cttattttcttaagcttttcaggatagcttatgaaaagaacttataacttata 34382935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 36887549 - 36887463
Alignment:
Q  89 cttatttttataagctcttcaggatagtttatgaaaacacct--tataacttatattttaccttttgttacagaaataggttatacat 174  Q
    |||||||| ||||| |||||| ||| | ||||||||||| ||  ||||||||| |||||| ||||||||| |||||||  ||||||||    
T  36887549 cttattttcataagttcttcaagatggcttatgaaaacaacttatataactta-attttatcttttgttatagaaataacttatacat 36887463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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