View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_25 (Length: 397)

Name: NF9954_low_25
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_25
NF9954_low_25
[»] chr1 (15 HSPs)
chr1 (10-397)||(2819054-2819433)
chr1 (9-309)||(8698817-8699112)
chr1 (13-295)||(31359288-31359560)
chr1 (115-198)||(21683120-21683203)
chr1 (115-177)||(16870034-16870096)
chr1 (116-177)||(18517118-18517179)
chr1 (15-139)||(25399345-25399470)
chr1 (15-85)||(10153995-10154066)
chr1 (115-267)||(26703626-26703780)
chr1 (115-177)||(23054437-23054499)
chr1 (115-177)||(26280007-26280069)
chr1 (115-195)||(16478658-16478738)
chr1 (115-172)||(17018650-17018707)
chr1 (115-151)||(18129993-18130029)
chr1 (13-88)||(22640252-22640328)
[»] chr2 (17 HSPs)
chr2 (60-295)||(33705863-33706100)
chr2 (60-392)||(22683441-22683760)
chr2 (117-295)||(19643537-19643719)
chr2 (111-198)||(19320360-19320447)
chr2 (115-177)||(24440705-24440767)
chr2 (58-195)||(25918654-25918790)
chr2 (115-177)||(10896403-10896465)
chr2 (115-177)||(20568202-20568264)
chr2 (115-195)||(15668508-15668588)
chr2 (115-159)||(22383537-22383581)
chr2 (115-177)||(24157898-24157960)
chr2 (119-177)||(24844204-24844262)
chr2 (13-62)||(22524911-22524960)
chr2 (13-53)||(40202484-40202524)
chr2 (115-177)||(21911046-21911108)
chr2 (116-177)||(14793970-14794031)
chr2 (26-82)||(27939965-27940022)
[»] chr7 (28 HSPs)
chr7 (10-397)||(23125898-23126270)
chr7 (99-397)||(11572073-11572359)
chr7 (15-230)||(11015934-11016149)
chr7 (60-172)||(14114050-14114162)
chr7 (60-172)||(14423700-14423812)
chr7 (60-397)||(15870897-15871240)
chr7 (15-397)||(1878039-1878428)
chr7 (36-172)||(16472672-16472805)
chr7 (13-139)||(9762653-9762781)
chr7 (13-139)||(9803145-9803273)
chr7 (15-139)||(9396920-9397044)
chr7 (13-139)||(9805041-9805169)
chr7 (36-238)||(25807373-25807568)
chr7 (270-397)||(14114287-14114414)
chr7 (270-397)||(14423937-14424064)
chr7 (15-64)||(10254463-10254512)
chr7 (115-267)||(18361516-18361672)
chr7 (115-169)||(13172388-13172442)
chr7 (52-177)||(9064203-9064326)
chr7 (13-62)||(12222575-12222624)
chr7 (115-177)||(16105022-16105084)
chr7 (115-177)||(16307756-16307818)
chr7 (110-177)||(2501095-2501162)
chr7 (15-82)||(2501164-2501231)
chr7 (115-177)||(5035442-5035504)
chr7 (115-149)||(18047891-18047925)
chr7 (115-168)||(16412061-16412114)
chr7 (52-100)||(16412739-16412787)
[»] chr6 (20 HSPs)
chr6 (10-397)||(15477599-15477967)
chr6 (136-397)||(20462008-20462273)
chr6 (13-139)||(14758274-14758400)
chr6 (72-169)||(18026790-18026887)
chr6 (13-254)||(15541972-15542213)
chr6 (115-177)||(25930546-25930608)
chr6 (115-151)||(24728597-24728633)
chr6 (115-170)||(24398729-24398784)
chr6 (115-177)||(16462666-16462728)
chr6 (115-177)||(23231253-23231315)
chr6 (111-172)||(25595948-25596009)
chr6 (115-172)||(26185782-26185839)
chr6 (116-172)||(31127363-31127419)
chr6 (115-150)||(23006099-23006134)
chr6 (115-150)||(23782232-23782267)
chr6 (115-177)||(13145203-13145265)
chr6 (52-94)||(30451633-30451675)
chr6 (115-172)||(12348167-12348224)
chr6 (118-162)||(17445689-17445733)
chr6 (115-151)||(19875905-19875941)
[»] chr3 (29 HSPs)
chr3 (57-397)||(17761904-17762249)
chr3 (57-397)||(19063224-19063569)
chr3 (10-254)||(2903137-2903372)
chr3 (52-397)||(11513845-11514177)
chr3 (52-310)||(27851549-27851810)
chr3 (76-295)||(12409760-12409987)
chr3 (115-196)||(13699427-13699508)
chr3 (272-397)||(15647962-15648087)
chr3 (227-397)||(13932110-13932283)
chr3 (115-177)||(17697679-17697741)
chr3 (115-162)||(315154-315201)
chr3 (125-172)||(13653995-13654042)
chr3 (115-177)||(8729022-8729084)
chr3 (115-177)||(9080909-9080971)
chr3 (115-177)||(16882358-16882420)
chr3 (272-397)||(15552281-15552406)
chr3 (332-396)||(2903024-2903088)
chr3 (115-167)||(20418301-20418353)
chr3 (58-177)||(22766557-22766675)
chr3 (24-177)||(19658008-19658161)
chr3 (115-197)||(21317460-21317542)
chr3 (46-171)||(15647750-15647875)
chr3 (115-190)||(3087606-3087681)
chr3 (115-150)||(16794336-16794371)
chr3 (24-90)||(13931924-13931990)
chr3 (115-149)||(14077405-14077439)
chr3 (115-177)||(19197904-19197966)
chr3 (227-312)||(13654116-13654207)
chr3 (115-167)||(4243208-4243259)
[»] chr8 (9 HSPs)
chr8 (15-139)||(17687947-17688071)
chr8 (52-324)||(19505312-19505590)
chr8 (121-310)||(12541699-12541892)
chr8 (108-249)||(27739925-27740067)
chr8 (13-132)||(24635283-24635403)
chr8 (117-172)||(12193968-12194023)
chr8 (117-172)||(12438396-12438451)
chr8 (115-177)||(17916849-17916911)
chr8 (120-237)||(1208589-1208709)
[»] chr5 (19 HSPs)
chr5 (10-149)||(27276184-27276324)
chr5 (119-177)||(31589025-31589083)
chr5 (243-396)||(20237192-20237349)
chr5 (58-172)||(17262750-17262863)
chr5 (108-177)||(2152918-2152987)
chr5 (115-172)||(16607581-16607638)
chr5 (115-172)||(20237400-20237457)
chr5 (115-172)||(26119842-26119899)
chr5 (115-162)||(23589780-23589827)
chr5 (115-177)||(39798894-39798956)
chr5 (332-397)||(26118408-26118473)
chr5 (120-177)||(27057387-27057444)
chr5 (115-172)||(34638515-34638572)
chr5 (115-162)||(20567870-20567917)
chr5 (15-57)||(26055661-26055703)
chr5 (16-139)||(26118656-26118780)
chr5 (108-177)||(13692478-13692547)
chr5 (115-196)||(22585994-22586075)
chr5 (243-295)||(27276043-27276098)
[»] scaffold0388 (1 HSPs)
scaffold0388 (121-397)||(5454-5736)
[»] scaffold0092 (2 HSPs)
scaffold0092 (36-149)||(8076-8189)
scaffold0092 (271-397)||(8296-8422)
[»] scaffold0758 (1 HSPs)
scaffold0758 (52-284)||(4278-4514)
[»] chr4 (17 HSPs)
chr4 (115-177)||(13027843-13027905)
chr4 (115-171)||(17812286-17812342)
chr4 (115-177)||(20570985-20571047)
chr4 (115-172)||(14357122-14357179)
chr4 (60-169)||(23087695-23087803)
chr4 (115-295)||(18394599-18394780)
chr4 (115-172)||(2651863-2651920)
chr4 (115-196)||(20577349-20577430)
chr4 (13-83)||(2940410-2940482)
chr4 (115-150)||(16324529-16324564)
chr4 (115-177)||(10249879-10249941)
chr4 (315-397)||(17812127-17812209)
chr4 (115-177)||(18774112-18774174)
chr4 (10-59)||(17526491-17526540)
chr4 (24-84)||(24619628-24619689)
chr4 (117-177)||(14902445-14902505)
chr4 (117-169)||(41114759-41114811)
[»] scaffold0498 (1 HSPs)
scaffold0498 (108-267)||(3192-3353)
[»] scaffold0622 (2 HSPs)
scaffold0622 (115-179)||(3379-3443)
scaffold0622 (113-177)||(2728-2792)
[»] scaffold1107 (1 HSPs)
scaffold1107 (72-172)||(2343-2443)
[»] scaffold0067 (1 HSPs)
scaffold0067 (116-172)||(16403-16459)
[»] scaffold0772 (1 HSPs)
scaffold0772 (115-161)||(874-920)
[»] scaffold0074 (1 HSPs)
scaffold0074 (115-177)||(31694-31756)
[»] scaffold0011 (1 HSPs)
scaffold0011 (115-177)||(59628-59690)
[»] scaffold0003 (3 HSPs)
scaffold0003 (122-180)||(416025-416083)
scaffold0003 (115-168)||(773-826)
scaffold0003 (52-100)||(1451-1499)
[»] scaffold0035 (1 HSPs)
scaffold0035 (115-172)||(29867-29924)
[»] scaffold0351 (1 HSPs)
scaffold0351 (118-190)||(9221-9293)
[»] scaffold0002 (1 HSPs)
scaffold0002 (118-190)||(112277-112349)
[»] scaffold0040 (1 HSPs)
scaffold0040 (115-190)||(3987-4062)
[»] scaffold0311 (1 HSPs)
scaffold0311 (115-177)||(20138-20200)
[»] scaffold0364 (1 HSPs)
scaffold0364 (115-159)||(10402-10446)
[»] scaffold0031 (1 HSPs)
scaffold0031 (36-83)||(104851-104899)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 2819433 - 2819054
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctc 109  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  2819433 agcagagacataactgtagtttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgt--------tcttccactgtccattctc 2819342  T
Q  110 tgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaact 209  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2819341 tgtgtataagcatctaatgccttctaattcctctgaaatagccgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaact 2819242  T
Q  210 gacttcaggttcttcatttcaaactctgatggtcttcagactctggtgacttcagactacagtcagcttctgatggtcttcagactatgatgtcttcaga 309  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||| |||||    
T  2819241 aacttcaggttcttcatttcaaactctaatagtcttcagactctggtgacttcggactacagtcagtttctgatggtcttcagactcttatgtcctcaga 2819142  T
Q  310 cccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  2819141 cccagacttgcaacaaagtttctcttgaaaattcttttgttctcaattattctaccaggaccaataccttgttttaagacttataaat 2819054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 8698817 - 8699112
Alignment:
Q  9 gagcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattct 108  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||||||||||||         ||||||||||||||||||| |||||||||||| ||||    
T  8698817 gagcagagacacagttgtagcttgtactatgtgcatgaaatgttggagtagtggt--------tgtacaattgtactattgtccttccactgtcctttct 8698908  T
Q  109 ctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaac 208  Q
    || || |||||||||||| |||||||  ||||| |||||||| | |||||| ||| || ||||| |||| ||||||||||||  ||||||   | |||||    
T  8698909 ctttggataagcatccaaagccttctgcttcctttgaaatagttattgctcaagtgttttattccttctgcactcttgtgtctacaaataacaaattaac 8699008  T
Q  209 tgacttcaggttcttcatttcaaactctgatggtcttcagactctggtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtctt 305  Q
    | |||| ||||| | || | || ||||| |||||||||||||||| |||||||||||||   |||||||||||| ||||||||| ||||| |||||||||    
T  8699009 taactttaggttatccactccagactctaatggtcttcagactctagtgacttcagactctgacagtcagcttcggatggtctttagactctgatgtctt 8699108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 31359288 - 31359560
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgt 112  Q
    ||||||||| |||||||| ||| |||| |||||||||||||||||||   |||      ||||||||||||||||||| |||| ||||||  |||||| |    
T  31359288 agagacacagttgtagctcgtactatgtgcatgaaatgttggagtagc--agt------tgtacaattgtactattgtccttc-actgtcatttctctat 31359378  T
Q  113 gtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgac 212  Q
    | |||||||||||| |||||||||||| || ||||||  ||||||  ||||||||||||| |||| ||   ||||||| | ||  |      ||||| ||    
T  31359379 ggataagcatccaaagccttctaattcttcagaaatatttgttgcatcagtcttctattccttctgcatatttgtgtctttaagaa------taactaac 31359472  T
Q  213 ttcaggttcttcatttcaaactctgatggtcttcagactct-ggtga-cttcagact---acagtcagcttctgatggtcttcagact 295  Q
    ||||||||||||| |||| ||||| |||  ||||||||||| ||||| |||||||||   ||||||||||||| ||||||||||||||    
T  31359473 ttcaggttcttcacttcagactctaatgaacttcagactctgggtgatcttcagactctgacagtcagcttctaatggtcttcagact 31359560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 21683203 - 21683120
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaata 198  Q
    ||||||||||||||||||||||||||| ||||||||  |||||| ||| ||||||||| |||| || ||||||||| |||||||    
T  21683203 ataagcatccaatgccttctaattcctttgaaatagtcgttgcttcagacttctattccttctgcaatcttgtgtcttcaaata 21683120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 16870034 - 16870096
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||  |||||||||    
T  16870034 ataagcatccaatgccttctaattcctctgaaatagcaattgctccaggctttcattcattct 16870096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 18517179 - 18517118
Alignment:
Q  116 taagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||| ||||    
T  18517179 taagcatccaatgccttctaattcctttgaaatagtcgttgctccaggcttctattccttct 18517118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 25399345 - 25399470
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctgtg 113  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| ||  ||||||||| |||||||  || | |||||||| |||| || |    
T  25399345 agacacaattgtagcttgtactatgtgcaggaaatgttggagtagtggaggtagtgattgtacaattatactatttgtccttcactgtcctttctttgag 25399444  T
Q  114 tataagcatccaatgccttctaattc 139  Q
     ||||  |||||| ||||| ||||||    
T  25399445 aataaatatccaaagccttttaattc 25399470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 10153995 - 10154066
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtact 85  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||  ||||||||||||||    
T  10153995 agacacaactgtagcttttactatgcgcatgaaatgttggagtagtggaggtagtgattgtacaattgtact 10154066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 26703626 - 26703780
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattca--tttaactgac 212  Q
    |||||||| ||||| ||||||||| ||||||||||||  | | ||||| ||||| ||| |||| ||  |||||||| || ||||  ||  ||||||| ||    
T  26703626 ataagcatacaatgtcttctaatttctctgaaatagccatcgttccaggcttctgttccttctgcaaacttgtgtcttccaataaccaactttaactaac 26703725  T
Q  213 ttcaggttcttcatttcaaactctgatggtcttcagactctggtgacttcagact 267  Q
    | ||| ||||| | ||||||||||||||  |||||||||||| |||| |||||||    
T  26703726 tccagcttcttgacttcaaactctgatgaacttcagactctgatgacgtcagact 26703780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 23054437 - 23054499
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||||| ||||||||| ||||    
T  23054437 ataaacatccaatgccttctaatttctctgaaatagtcgttgctccaggcttctattccttct 23054499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 26280069 - 26280007
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||| |||||||||| ||||||||||  |||||||||| ||||||||| ||||    
T  26280069 ataagcatccaatgacttctaattcatctgaaatagtcgttgctccaggcttctattccttct 26280007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 16478738 - 16478658
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaa 195  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||  || ||||  |||| || ||||||||| ||||    
T  16478738 ataagcatccaatgccttctaatttctctgaaatagtcgttgctccaggtttatatttcttctgcaatcttgtgtcttcaa 16478658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 17018650 - 17018707
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||| ||| |||||||||||| ||| ||||||||||  |||||||||    
T  17018650 ataagcatccaatgctttccaattcctctgaagtagttgttgctccaagcttctattc 17018707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 18130029 - 18129993
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagc 151  Q
    ||||||||||||| |||||||||||||||||||||||    
T  18130029 ataagcatccaataccttctaattcctctgaaatagc 18129993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 22640252 - 22640328
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactatt 88  Q
    |||||||||| | |||||||||  |||||||  ||||||||||||| |||| ||| ||| |||||||| ||||||||    
T  22640252 agagacacaactctagcttgtacaatgcgcagaaaatgttggagtattggaggtactggttgtacaatagtactatt 22640328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 60 - 295
Target Start/End: Complemental strand, 33706100 - 33705863
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| ||| ||||||||||||||||| | ||| || ||||||||||||||| |||||||||||| ||||||||||| |||||||||||  ||||||     
T  33706100 tggagtagtggttgtacaattgtactattatcctttcaatgtccattctctgtggataagcatccaaagccttctaatttctctgaaatagtcgttgctt 33706001  T
Q  160 cagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgacttcaggttcttcatttcaaactctgatggtcttcagactctggtgac 259  Q
    |||||||||||||||||| ||| | |||||| |||||||  ||||||||| ||||||||||||||| |||| ||||| |||||||||||||| |||||||    
T  33706000 cagtcttctattcattctgcacacctgtgtcttcaaatacccatttaacttacttcaggttcttcacttcagactctaatggtcttcagactttggtgac 33705901  T
Q  260 ttcagact---acagtcagcttctgatggtcttcagact 295  Q
    || |||||   |||| || |||||||| |||||||||||    
T  33705900 tttagactctgacagccaacttctgat-gtcttcagact 33705863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 60 - 392
Target Start/End: Original strand, 22683441 - 22683760
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| | ||||||||||| ||||||||| |||||||||||| |||||| || |||||||| |||||||||||| ||||| ||||||||  |||||||    
T  22683441 tggagtagtagctgtacaattatactattgtccttccactgtcctttctctttggataagcattcaatgccttctatttcctttgaaatagtcgttgctc 22683540  T
Q  160 cagtcttctattcattcttcactcttgtgtcatcaaatattc-atttaactgacttcaggttcttcatttcaaactctgatggtcttcagactctggtga 258  Q
     ||| || ||||| |||| ||| |||||||| |||||||  | |||||| |||||||||||||||||                 ||||||||||||||||    
T  22683541 tagttttatattccttctacacacttgtgtcttcaaataaccaatttaaatgacttcaggttcttca-----------------cttcagactctggtga 22683623  T
Q  259 cttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaa 355  Q
    ||||| | |   | ||||| |||||||||||||||||||| ||||||||| |||| |  |||| |||||||| || |||||| |||||||||  ||||||    
T  22683624 cttcatattctgatagtcaacttctgatggtcttcagactctgatgtctttagactctgacttgcaacaaagcttatcttgacaattctttttctctcaa 22683723  T
Q  356 ttattctaccaggaccgatacattgttttaagactta 392  Q
     |||||| | || ||| |||  |||||||||||||||    
T  22683724 ctattcttcaagaaccaataacttgttttaagactta 22683760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 117 - 295
Target Start/End: Complemental strand, 19643719 - 19643537
Alignment:
Q  117 aagcatccaatgccttctaattcctctgaaatagctgtt--gctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgactt 214  Q
    ||||||||||||||||||||||||||| |||||| ||||  ||||||||||| ||||| |||| ||| |||||||| |||||||  || |  | | ||||    
T  19643719 aagcatccaatgccttctaattcctctaaaatagttgttttgctccagtcttatattccttctgcacacttgtgtcttcaaataaccaat--attaactt 19643622  T
Q  215 caggttcttcatttcaaactctgatggtcttcagactct-ggtgacttcagact---acagtcagcttctgatggtcttcagact 295  Q
    ||||||||||| |||| |||||||||  ||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  19643621 caggttcttcacttcagactctgatgaacttcagactctaggtgacttcagactcaaacagtcagcttctgatggtcttcagact 19643537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 19320447 - 19320360
Alignment:
Q  111 gtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| || ||  ||||| |||||||    
T  19320447 gtgtataagcatccaatgccttctaattcctctgaaatagctgttgctctagccttctattccttctgcaatcacgtgtcttcaaata 19320360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 24440767 - 24440705
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  24440767 ataaacatccaatgccttctaattcctctgaaatagcagttgctccaggcttctattccttct 24440705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 25918654 - 25918790
Alignment:
Q  58 agtggagtaatggctgtacaattgtactattgttcttccactgtccattctct-gtgtataagcatccaatgccttctaattcctctgaaatagctgttg 156  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||  |  ||| | ||| |||||||||||||||||||||||||||||||  |||   |||    
T  25918654 agtggagtagtggttgtacaattgtactattgtccttctactgcgc--tctttagtggataagcatccaatgccttctaattcctctgatgtagacattg 25918751  T
Q  157 ctccagtcttctattcattcttcactcttgtgtcatcaa 195  Q
    |||||| ||||||||| |||| ||  |||||||| ||||    
T  25918752 ctccagacttctattccttctgcaaacttgtgtcttcaa 25918790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 10896465 - 10896403
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||| ||||    
T  10896465 ataagcatccaatgccttctaattcttctgaaatagccgttgctccaggattctattctttct 10896403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 20568202 - 20568264
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||| ||||    
T  20568202 ataagcatccaatgccttctaattcctataaaatagccgttgctccaggcttctattccttct 20568264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 15668588 - 15668508
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaa 195  Q
    |||||||||||||||||| |||||| ||||||||||| |||||| ||  ||| ||||| |||| || ||||||||| ||||    
T  15668588 ataagcatccaatgccttttaattcatctgaaatagccgttgcttcaagcttatattccttctgcagtcttgtgtcttcaa 15668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 22383537 - 22383581
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||    
T  22383537 ataagcatccaatgccttctaattcctctaaaatagccgttgctc 22383581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 24157898 - 24157960
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||| |||||||||||||| ||||||  |||||||||| |||| |||| ||||    
T  24157898 ataagcatccaatgtcttctaattcctctaaaatagtcgttgctccaggcttccattccttct 24157960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 24844204 - 24844262
Alignment:
Q  119 gcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||| || |||||||||||||  |||||||||| ||||||||| ||||    
T  24844204 gcatccaatgccttccaactcctctgaaatagtcgttgctccaggcttctattctttct 24844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 22524960 - 22524911
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgg 62  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||    
T  22524960 agagacacaattgtaggttttactatgcgcatgaaattttggagtagtgg 22524911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 40202524 - 40202484
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttg 53  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  40202524 agagacacaactgtagcttgtattatgcgcatgaaatgttg 40202484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 21911108 - 21911046
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||| |||||||||||||| |||| |||| |  |||||||||| ||||||||| ||||    
T  21911108 ataagcatcaaatgccttctaatttctctaaaatcgtcgttgctccaggcttctattccttct 21911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 14794031 - 14793970
Alignment:
Q  116 taagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||| ||||| ||| |||||||||||||||||  |||||||||| ||||| ||| ||||    
T  14794031 taagcatgcaatgtcttataattcctctgaaatagtcgttgctccaggcttctgttccttct 14793970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 27939965 - 27940022
Alignment:
Q  26 tagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgt 82  Q
    ||||||||| |||||||| |||||||||||||| |||| ||| ||| |||||||||||    
T  27939965 tagcttgtactatgcgcaagaaatgttggagtaatggaggtagtggttgtacaattgt 27940022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 23125898 - 23126270
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctc 109  Q
    |||||||||||| |||||| | ||| |||||| |||||||||||||||| ||||||| ||  ||||||||||||||||||| ||||||||| || |||||    
T  23125898 agcagagacacagttgtag-tagtactatgcgaatgaaatgttggagtaatggagtagtgattgtacaattgtactattgtccttccactgccctttctc 23125996  T
Q  110 tgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaact 209  Q
      || ||||||||| ||| ||||| ||||||||| ||||| |  || || ||||||||||||| |||| ||| | |||||| |||||||| |||||  ||    
T  23125997 catggataagcatctaataccttccaattcctctcaaataacaattacttcagtcttctattccttctgcacacgtgtgtcttcaaatatccattttgct 23126096  T
Q  210 gacttcaggttcttcatttcaaactctgatggtcttcagactctggtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtcttc 306  Q
     |||||||||||||||                 |||  ||||||||||||||||||||   ||| |||||||||||| ||||||| ||| ||||| ||||    
T  23126097 aacttcaggttcttca-----------------cttaggactctggtgacttcagactctgacaatcagcttctgattgtcttcaaactttgatgccttc 23126179  T
Q  307 agacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||| || | || |||| ||| ||  |||| ||||||||||| |||||||| ||||| ||| ||| |||  ||||||||||||||||||||    
T  23126180 agactcagaattgcaactaagcttcccttgtaaattcttttgctctcaattgttctatcagaaccaatatcttgttttaagacttataaat 23126270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 397
Target Start/End: Complemental strand, 11572359 - 11572073
Alignment:
Q  99 tgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaata 198  Q
    ||||| |||||||||  ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||  ||||||| ||||| |    
T  11572359 tgtcctttctctgtggttaagcatacaatgccttctaattcctctgaaatatctgttgcttcagtcttctattccttctgcacatttgtgtcttcaaaaa 11572260  T
Q  199 ttcatttaactgacttcaggttcttcatttcaaactct-gatggtcttcagactctggtgacttcagactacagtcagcttctgatggtcttcagactat 297  Q
    | | ||||||| ||||||||||||||| |||| ||||| | || |||||| ||||||             |||||||||||||||||||||||| |||      
T  11572259 tccgtttaactaacttcaggttcttcacttcagactctaggtgatcttcatactctg-------------acagtcagcttctgatggtcttcacactcg 11572173  T
Q  298 gatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
     |||||||||||| |  |||| |||| ||| || ||||| ||||||||||| ||||| || |||| |||  ||| |||| ||||||||||||||||||||    
T  11572172 aatgtcttcagactctgacttgcaactaagcttctcttgtaaattcttttgctctcatttgttcttccataaccaataccttgttttaagacttataaat 11572073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 11015934 - 11016149
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctgtg 113  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||| ||| ||| ||| ||||||||| |||||||| |||| || ||||| |||||||||    
T  11015934 agacacaactgtagcttgtactatgtgcaagaaatgttggagtaggggaggtagtggttgtacaattatactattg-tctttcattgtcctttctctgtg 11016032  T
Q  114 tataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcat-ttaactgac 212  Q
     |||||||| |||||||||||||||| || | |||| |  ||||||||||||||||||| |||| ||   ||||||| ||||||||  ||  ||||| ||    
T  11016033 gataagcattcaatgccttctaattcttc-ggaatatccattgctccagtcttctattccttctgcatatttgtgtcttcaaatatctataataactaac 11016131  T
Q  213 ttcaggttcttcatttca 230  Q
    ||||||||||||| ||||    
T  11016132 ttcaggttcttcacttca 11016149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 14114050 - 14114162
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| ||| |||||||||||| ||| || ||||| |||||| ||||||||| ||||||||| ||||||||||||||| |||||||||| | ||||||    
T  14114050 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14114149  T
Q  160 cagtcttctattc 172  Q
    |||||||||||||    
T  14114150 cagtcttctattc 14114162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 14423700 - 14423812
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| ||| |||||||||||| ||| || ||||| |||||| ||||||||| ||||||||| ||||||||||||||| |||||||||| | ||||||    
T  14423700 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14423799  T
Q  160 cagtcttctattc 172  Q
    |||||||||||||    
T  14423800 cagtcttctattc 14423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 397
Target Start/End: Complemental strand, 15871240 - 15870897
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| ||| ||||||||||||||||||| |||| | ||||| | || |||| ||||||||||||||||||||||||| || |||| |  ||||||||    
T  15871240 tggagtagtggttgtacaattgtactattgtccttcaa-tgtccttcctatgtggataagcatccaatgccttctaattcttcagaaaaatttgttgctc 15871142  T
Q  160 cagtcttctattcattcttcactcttgtgtcatcaaatattcat-ttaactgacttcaggttcttcatttcaaactctgatggtcttcagactct-ggtg 257  Q
    ||||||||||||| |||| |||  | ||  | | |||||| |||  ||||| ||||||||||||||| |||| ||| |||||   |||||||||| ||||    
T  15871141 cagtcttctattccttctgcacattggttacttaaaatatccataataactaacttcaggttcttcacttcagactttgatgaaattcagactctaggtg 15871042  T
Q  258 a-cttcagact---acagtcagcttct-gatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttct 352  Q
    | |||||| ||   ||||| ||||||| ||| ||||||| ||| ||||| ||| |||| |  |||| |||| ||| ||  |||| |||||| |||| |||    
T  15871041 atcttcagtctctgacagttagcttctggattgtcttcacactctgatgcctttagactctgacttgcaactaagcttcccttgtaaattcctttgctct 15870942  T
Q  353 caattattctaccaggaccgatacattgttttaagacttataaat 397  Q
     | || | || |||| ||  |||| ||||||||||||||||||||    
T  15870941 aatttgtacttccagaacaaatactttgttttaagacttataaat 15870897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 1878428 - 1878039
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggag-taatggctgtacaattgtactattgttcttccactgtccattctctgtg 113  Q
    |||||||| |||| ||| || ||||||||||||||||||||||||||||| || ||| |||||||||| || | ||   ||| ||||| | |||||| ||    
T  1878428 agacacaactgtaacttttactatgcgcatgaaatgttggagtagtggaggtagtggttgtacaattgcaccactgacattc-actgttctttctctttg 1878330  T
Q  114 tataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaa-ctgac 212  Q
    |||||||||| || |||||||||||| || ||| || | ||||||| |||||||||||  || | |||  ||||||| |||||||| |||  || || ||    
T  1878329 tataagcatctaaagccttctaattcttcagaa-tatccgttgctctagtcttctattacttatgcacatttgtgtcttcaaatatccataaaaactaac 1878231  T
Q  213 ttcaggttcttcatttcaaactctgatgg-tcttcagactctgg-tga-cttcagact---acagtcagcttctga-tggtcttcagactatgatgtctt 305  Q
    || || ||||||| ||||   |||||||  |||| ||||||||| ||| |||||||||   |||| |||||||| | | ||||||||||| |||  | ||    
T  1878230 tttagattcttcacttcagcttctgatgaatctttagactctgggtgaacttcagactctgacagccagcttcttaatagtcttcagactctgacttttt 1878131  T
Q  306 cagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    || |  |  |||| |||| ||| || ||||||||||||||||| |||||||| ||||  ||| ||| |||| ||||||||||||||||||||    
T  1878130 caaattctgacttgcaactaagcttctcttgaaaattcttttgctctcaattgttctttcagaaccaatactttgttttaagacttataaat 1878039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 16472672 - 16472805
Alignment:
Q  36 tatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttcta 135  Q
    ||||||||  ||||||||||||||||||||| ||| |||| |||||||||||||| ||| | |||||| ||    ||| |||||||||||||||||||||    
T  16472672 tatgcgcagaaaatgttggagtagtggagtattggttgtataattgtactattgtcctttctctgtccttt---agtggataagcatccaatgccttcta 16472768  T
Q  136 attcctctgaaatagctgttgctccagtcttctattc 172  Q
    || ||| ||||| ||  ||| ||||||||||||||||    
T  16472769 atgcctttgaaaaagtcgttactccagtcttctattc 16472805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 9762653 - 9762781
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaa-atgttggagtagtgg-agtaatggctgtacaattgtactattgttcttccactgtccattctct 110  Q
    |||||||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||| |||||||||||||||||  || | || ||| | ||||||    
T  9762653 agagacacaattgtagcttgtactatgcacatgaagatgttggattagtggtggtaatggttgtacaattgtactatttgtccttcaatgttctttctct 9762752  T
Q  111 gtgtataagcatccaatgccttctaattc 139  Q
    | | |||||||||||| || |||||||||    
T  9762753 gagaataagcatccaaagctttctaattc 9762781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 9803145 - 9803273
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaa-atgttggagtagtggag-taatggctgtacaattgtactattgttcttccactgtccattctct 110  Q
    |||||||||||||||||||||| ||||| |||||| |||||||| |||||| | |||||| |||||||||||||||||  || | || ||||| ||||||    
T  9803145 agagacacaattgtagcttgtactatgcacatgaagatgttggattagtggtggtaatggttgtacaattgtactatttgtccttcaatgtcctttctct 9803244  T
Q  111 gtgtataagcatccaatgccttctaattc 139  Q
      | |||||||||||| || |||||||||    
T  9803245 aagaataagcatccaaagctttctaattc 9803273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 9397044 - 9396920
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctgtg 113  Q
    ||||||| |||||||||||| |||||| | ||||||||||||||||||| ||| ||| |||| ||||||| |||||||||| |||| ||| || | || |    
T  9397044 agacacagttgtagcttgtactatgcgtaggaaatgttggagtagtggatgtagtggttgtataattgtattattgttctt-cactatcctttttatgag 9396946  T
Q  114 tataagcatccaatgccttctaattc 139  Q
     |||| |||||| |||||||||||||    
T  9396945 gataaccatccattgccttctaattc 9396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 9805041 - 9805169
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaa-atgttggagtagtgg-agtaatggctgtacaattgtactattgttcttccactgtccattctct 110  Q
    |||||||||||||||||||||| ||||| |||||| |||||||| ||||||  | ||||| ||||| |||||||||||  || | || ||||| ||||||    
T  9805041 agagacacaattgtagcttgtactatgcacatgaagatgttggattagtggtggcaatggttgtactattgtactatttgtccttcaatgtcctttctct 9805140  T
Q  111 gtgtataagcatccaatgccttctaattc 139  Q
    | | |||||||||||| || |||||||||    
T  9805141 gagaataagcatccaaagctttctaattc 9805169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 25807373 - 25807568
Alignment:
Q  36 tatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttcta 135  Q
    ||||| || |||||||||||||||||||||| ||| ||||||||||||||||| | ||| | |||||| |  || ||| ||||  ||||||||||         
T  25807373 tatgctcaggaaatgttggagtagtggagtagtggttgtacaattgtactattatccttgctctgtccttcttcagtggataaatatccaatgcc----- 25807467  T
Q  136 attcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgacttcaggttcttcatttcaaactc 235  Q
      |||| ||||||||  ||||| ||||| |||||||| |||| |||  ||||||| ||||||| ||| |||||||| ||||  ||||||| || | ||||    
T  25807468 --tcctttgaaatagtcgttgccccagttttctattccttctacacaattgtgtcttcaaataatcaattaactgatttcaaattcttcactttagactc 25807565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 14114287 - 14114414
Alignment:
Q  270 agtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccagga 369  Q
    ||| |||||| ||||||||||||||| | |||||||||||| || |||| |||| ||| ||  |||||||||||||||| |||||||| |||| | || |    
T  14114287 agttagcttccgatggtcttcagactctaatgtcttcagactcagacttgcaactaagcttcacttgaaaattcttttgatctcaattgttcttctagaa 14114386  T
Q  370 ccgatacattgttttaagacttataaat 397  Q
    || |||   |||||||| ||||||||||    
T  14114387 ccaatatcctgttttaaaacttataaat 14114414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 14423937 - 14424064
Alignment:
Q  270 agtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccagga 369  Q
    ||| |||||| ||||||||||||||| | |||||||||||| || |||| |||| ||| ||  |||||||||||||||| |||||||| |||| | || |    
T  14423937 agttagcttccgatggtcttcagactctaatgtcttcagactcagacttgcaactaagcttcacttgaaaattcttttgatctcaattgttcttctagaa 14424036  T
Q  370 ccgatacattgttttaagacttataaat 397  Q
    || |||   |||||||| ||||||||||    
T  14424037 ccaatatcctgttttaaaacttataaat 14424064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 10254512 - 10254463
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggag 64  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10254512 agacacacttgtagcttgtaatatgcgcaggaaatgttggagtagtggag 10254463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 18361672 - 18361516
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaa-atattca--tttaactga 211  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| ||  ||||||||| |||| || || |||||| |||| |||  ||  | ||||| |    
T  18361672 ataagcatctaatgccttctaattcctctgaaatagttgttgcttcaagcttctattccttctacaatcatgtgtcttcaagataaccaactgtaactaa 18361573  T
Q  212 cttcaggttcttcatttcaaactctgatggtcttcagactctgg-tgacttcagact 267  Q
    || ||| ||||| | |||| |||||||||  ||||||||||||| |||| |||||||    
T  18361572 ctccagcttcttgacttcagactctgatgaacttcagactctggatgacgtcagact 18361516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 13172442 - 13172388
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttcta 169  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||| ||||||    
T  13172442 ataagcatccaatgccttctaattactctgaaatagtcgttgctccaggcttcta 13172388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 9064326 - 9064203
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagc 151  Q
    ||||||||||||||||||| ||||||||||||||| |||||||   ||| |  |  || ||| |||||||| |||||||||||||||||||  ||||||     
T  9064326 tggagtagtggagtaatggttgtacaattgtacta-tgttctttttctg-cgctcttcagtggataagcattcaatgccttctaattcctcataaatagt 9064229  T
Q  152 tgttgctccagtcttctattcattct 177  Q
     |||||||||| |||| |||| ||||    
T  9064228 cgttgctccaggcttccattccttct 9064203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 12222624 - 12222575
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgg 62  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  12222624 agagacacaattgtagcttgtactatgcgcaagaaatattggagtagtgg 12222575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 16105084 - 16105022
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||||| | ||||||  |||||||||| ||| ||||| ||||    
T  16105084 ataagcatccaatgccttctaattcctataaaatagtcgttgctccaggcttatattccttct 16105022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 16307818 - 16307756
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||| ||| ||||||  |||||||||| |||| |||| ||||    
T  16307818 ataagcatccaatgccttctaattcatctaaaatagtcgttgctccaggcttccattccttct 16307756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 2501162 - 2501095
Alignment:
Q  110 tgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||| ||||| || |||||||||||||||| || ||||||   |||||||||||||||||||| ||||    
T  2501162 tgtggataagaattcaatgccttctaattcttcagaaatattcgttgctccagtcttctattccttct 2501095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 2501231 - 2501164
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgt 82  Q
    |||||||| ||||||||||| |||| | | |||||| ||||||||| ||||| ||| |||||||||||    
T  2501231 agacacaactgtagcttgtactatgtgtaggaaatggtggagtagtagagtagtggttgtacaattgt 2501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 5035442 - 5035504
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||  ||||||||||  |||| ||||| ||| ||||| ||||    
T  5035442 ataagcatccaatgccttctaatttatctgaaataggcgttgttccaggcttttattccttct 5035504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 18047925 - 18047891
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaata 149  Q
    |||||||| ||||||||||||||||||||||||||    
T  18047925 ataagcattcaatgccttctaattcctctgaaata 18047891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 16412061 - 16412114
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttct 168  Q
    ||||||||||||||||||  |||| |||||||||||  |||||||||| |||||    
T  16412061 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttct 16412114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 16412739 - 16412787
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactg 100  Q
    ||||||||||||||  ||| ||||||||||||||||||| ||| |||||    
T  16412739 tggagtagtggagttgtggttgtacaattgtactattgtcctttcactg 16412787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 15477967 - 15477599
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctc 109  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||||||||          |||||||||||||||||||||||| | ||||| |||||    
T  15477967 agcagagacacagttgtagcttgtactatgcacaggaaatgttggagtagtgct--------tgtacaattgtactattgttcttc-agtgtcctttctc 15477877  T
Q  110 tgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttct-attcattcttcactcttgtgtcatcaaatatt--cattta 206  Q
    | || ||||||| ||||||||||||||||| || ||||||  ||||||  || |||||| |||| |||| ||   ||||||| ||||||||   ||||||    
T  15477876 tttggataagcagccaatgccttctaattcatcagaaataattgttgcatcaatcttcttattccttctgcatgtttgtgtcttcaaatatatccattta 15477777  T
Q  207 actgacttcaggttcttcatttcaaactctgatggtcttcagactctggtgacttcagactacagtcagcttctgatggtcttcagactatgatgtcttc 306  Q
    | | |||||| ||||||||||||| |||||||||  ||||||||||||             ||||||||||| |||||||||||||||| | || |||||    
T  15477776 aataacttcaagttcttcatttcagactctgatgaacttcagactctg-------------acagtcagcttatgatggtcttcagactttaatttcttc 15477690  T
Q  307 agacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||| |  |||| |||  ||| || |||||||||||| |||||||| | || |||| |||| ||| |||| ||||||||||||||||||||    
T  15477689 agactctgacttgcaaataagcttctcttgaaaattcctttgttctaacttgttcttccagaaccaatactttgttttaagacttataaat 15477599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 397
Target Start/End: Original strand, 20462008 - 20462273
Alignment:
Q  136 attcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgacttcaggttcttcatttcaaactc 235  Q
    ||||| ||||||||||  || ||||||| |||||||| |||| ||| |||||||| ||||| ||  ||||  || ||||||||||||||| || | ||||    
T  20462008 attccactgaaatagcccttactccagt-ttctattccttctgcacacttgtgtcttcaaaaatcaattttgctaacttcaggttcttcactttagactc 20462106  T
Q  236 tgatggtcttcagactctggt-ga-cttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagttt 330  Q
    | |||  |||||| ||||||  || ||| |||||   |||||||||||||||||||||||||||| |||||||||||||| || |||| |||| ||| ||    
T  20462107 taatgaacttcaggctctgggagatctttagactttgacagtcagcttctgatggtcttcagactttgatgtcttcagactcagacttgcaactaagctt 20462206  T
Q  331 gtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
      |||| ||||||||||  ||||| || |||| |||| ||  |||| || |||||||||||||||||    
T  20462207 cccttgtaaattctttttctctcatttgttcttccagaacaaataccttcttttaagacttataaat 20462273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 14758274 - 14758400
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctg 111  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| | ||| |||||||| ||||||     
T  14758274 agagacacaactgtagcttgtactatgcgcatgaaatgttggagtagtggaggtagtggttgtacaattgtattattatcctt-cactgtcctttctctt 14758372  T
Q  112 tgtataagcatccaatgccttctaattc 139  Q
    || |||||||||||  ||||| ||||||    
T  14758373 tggataagcatccatagccttttaattc 14758400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 18026887 - 18026790
Alignment:
Q  72 tgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttcta 169  Q
    ||||||||||||||||||| ||| |  |||||||  || ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  18026887 tgtacaattgtactattgtcctttctttgtccatcttcagtggataagcatccaatgccttctaattcctctgaaatagttgttgctccaggcttcta 18026790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 15541972 - 15542213
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctg 111  Q
    ||||||||||   ||||||||| |||||||||||||||||||||| ||||| ||| | | |||||||||||| |||| ||| |   |||||  ||||||     
T  15541972 agagacacaacaatagcttgtactatgcgcatgaaatgttggagttgtggaggtagtcgttgtacaattgtattatt-ttcctttgctgtcatttctcta 15542070  T
Q  112 tgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcat-ttaactg 210  Q
     | |||| ||||||||||||| |||||| |  ||||||   ||| ||||| |||||||||| |||| ||   ||||||| |||||||| |||  |||||     
T  15542071 aggataaacatccaatgccttataattcttaagaaatattcgtttctccaatcttctattc-ttctgcatatttgtgtcttcaaatatccataataacta 15542169  T
Q  211 acttcaggttcttcatttcaaactctgatggtcttcagactctg 254  Q
    ||||||||||| ||| |||| ||| || ||  ||||||||||||    
T  15542170 acttcaggttcctcacttcagactttgttgaacttcagactctg 15542213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 25930546 - 25930608
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||| |||| |||||||||||| |||| |||||||||| ||||||||| ||||    
T  25930546 ataagcatccaatgacttcaaattcctctgaattagccgttgctccaggcttctattccttct 25930608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 24728633 - 24728597
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagc 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  24728633 ataagcatccaatgccttctaattcctctgaaatagc 24728597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 24398729 - 24398784
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctat 170  Q
    ||||||||||||||||||||||||||| | ||||||  |||||||||| |||||||    
T  24398729 ataagcatccaatgccttctaattcctttaaaatagtcgttgctccaggcttctat 24398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 16462728 - 16462666
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||| |||||||||||  |||| ||| |||||| ||||||||| ||||    
T  16462728 ataagcatccaatgccttcaaattcctctgatttagccgtttctccaggcttctattccttct 16462666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 23231253 - 23231315
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||||||||||||| |||||||||| |  ||||| ||| ||| ||||||||||    
T  23231253 ataagcatccaatgccttctaatttctctgaaatatcaattgcttcaggcttttattcattct 23231315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 25595948 - 25596009
Alignment:
Q  111 gtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||| |||||||| ||||| ||||||||||| ||||||||  |||||||||| |||||||||    
T  25595948 gtgtttaagcatcaaatgcattctaattcctttgaaatagtcgttgctccagacttctattc 25596009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 26185782 - 26185839
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||| ||||||||||||||| ||||||||||| |||| |||||  ||||||||    
T  26185782 ataagcatctaatgccttctaattcatctgaaatagccgttgttccagatttctattc 26185839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 31127419 - 31127363
Alignment:
Q  116 taagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||| ||||||||||||||||   |||| ||||| |||||||||    
T  31127419 taagcatccaatgccttataattcctctgaaatatacgttgttccaggcttctattc 31127363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 23006134 - 23006099
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23006134 ataagcatctaatgccttctaattcctctgaaatag 23006099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 23782232 - 23782267
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23782232 ataagcatctaatgccttctaattcctctgaaatag 23782267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 13145203 - 13145265
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||| |||||||||||||||| ||||||||||  |||||  ||| ||||||||| ||||    
T  13145203 ataagcattcaatgccttctaattcatctgaaatagtcgttgcatcaggcttctattccttct 13145265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 30451675 - 30451633
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttctt 94  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||    
T  30451675 tggagtagtggagtactggttgtataattgtactattgttctt 30451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 12348167 - 12348224
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||||||||||||| |||| ||||||| |||| ||||  ||||||||| |||||||||    
T  12348167 ataagcatccaatgacttcaaattcctatgaattagccattgctccaggcttctattc 12348224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 17445733 - 17445689
Alignment:
Q  118 agcatccaatgccttctaattcctctgaaatagctgttgctccag 162  Q
    ||||| ||||| |||||||||||||||||||||  ||||||||||    
T  17445733 agcattcaatgtcttctaattcctctgaaatagtcgttgctccag 17445689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 19875905 - 19875941
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagc 151  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  19875905 ataagcatccattgccttgtaattcctctgaaatagc 19875941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 397
Target Start/End: Complemental strand, 17762249 - 17761904
Alignment:
Q  57 tagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttg 156  Q
    |||||||||| ||| ||||||||| ||||||||| ||| | ||| || |  ||  || |||| |||| ||||||||||||||||||  |||||   ||||    
T  17762249 tagtggagtagtggttgtacaattttactattgtcctttctctgaccttcttcactggataaacatcaaatgccttctaattcctccaaaataatcgttg 17762150  T
Q  157 ctccagtcttctattcattcttcactcttgtgtcatcaaatattca-tttaactgacttcaggttcttcatttcaaactctgatggtcttcagactct-g 254  Q
    |||||  ||||||||| || | ||  |||||||| |||||||  || ||||||||||||||||||||||| |||| |||||||||  ||||| ||||| |    
T  17762149 ctccaagcttctattccttatacaaacttgtgtcttcaaataaccaatttaactgacttcaggttcttcacttcagactctgatgaacttcaaactctag 17762050  T
Q  255 gtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttc 351  Q
    || ||||||||||   ||  |||||||||||||||||||||||| | |  ||||||||| || |||| |||| ||| ||  |||||||||||||||  ||    
T  17762049 gtaacttcagactctgactttcagcttctgatggtcttcagactcttaattcttcagactcagacttacaactaagctttccttgaaaattctttttctc 17761950  T
Q  352 tcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||||| ||||  ||| ||| |||  ||||| ||||||||||||||    
T  17761949 tcaattgttctttcagaaccaatatcttgttgtaagacttataaat 17761904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 397
Target Start/End: Complemental strand, 19063569 - 19063224
Alignment:
Q  57 tagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttg 156  Q
    |||||||||| ||| ||||||||| ||||||||| ||| | ||| || |  ||  || |||| |||| ||||||||||||||||||  |||||   ||||    
T  19063569 tagtggagtagtggttgtacaattttactattgtcctttctctgaccttcttcactggataaacatcaaatgccttctaattcctccaaaataatcgttg 19063470  T
Q  157 ctccagtcttctattcattcttcactcttgtgtcatcaaatattca-tttaactgacttcaggttcttcatttcaaactctgatggtcttcagactct-g 254  Q
    |||||  ||||||||| || | ||  |||||||| |||||||  || ||||||||||||||||||||||| |||| |||||||||  ||||| ||||| |    
T  19063469 ctccaagcttctattccttatacaaacttgtgtcttcaaataaccaatttaactgacttcaggttcttcacttcagactctgatgaacttcaaactctag 19063370  T
Q  255 gtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttc 351  Q
    || ||||||||||   ||  |||||||||||||||||||||||| | |  ||||||||| || |||| |||| ||| ||  |||||||||||||||  ||    
T  19063369 gtaacttcagactctgactttcagcttctgatggtcttcagactcttaattcttcagactcagacttacaactaagctttccttgaaaattctttttctc 19063270  T
Q  352 tcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||||| ||||  ||| ||| |||  ||||| ||||||||||||||    
T  19063269 tcaattgttctttcagaaccaatatcttgttgtaagacttataaat 19063224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 2903372 - 2903137
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctc 109  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||        ||||| |||||| |||| | ||||| | ||     
T  2903372 agcagagacacaactgtagcttgtactatgcgcatgaaatgttggagtagttgagtagtgg--------ttgtattattgtccttc-attgtccttactt 2903282  T
Q  110 tgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaact 209  Q
    |||| ||||||||||||||||||||||||| || ||||||  ||||||  ||||||||||||| ||||  ||  ||||||| ||||| || |||||||||    
T  2903281 tgtggataagcatccaatgccttctaattcttcagaaatatttgttgcatcagtcttctattccttctgtacatttgtgtcttcaaacatccatttaact 2903182  T
Q  210 gacttcaggttcttcatttcaaactctgatggtcttcagactctg 254  Q
     ||||||  ||||||| | || ||||| ||| |||| ||||||||    
T  2903181 aacttcaaattcttcaatacagactctcatgatctttagactctg 2903137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 397
Target Start/End: Original strand, 11513845 - 11514177
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagc 151  Q
    |||||||||||| || ||| ||||||||||||||||||| ||| | ||  || |  || ||| ||||||||  |||||||| |||||||||| ||||||     
T  11513845 tggagtagtggactagtggttgtacaattgtactattgtcctttccctaaccttcttcggtggataagcatgaaatgccttataattcctcttaaatagt 11513944  T
Q  152 tgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaa-ctgacttcaggttcttcatttcaaactctgatggtcttcagac 250  Q
     ||| |||||||||| ||||| || | ||| |||||| | |||||||  || | || || ||||||||||||||| |||| |||||| ||| ||||||||    
T  11513945 cgttactccagtcttatattccttatacacacttgtgccttcaaataaccaataaaactaacttcaggttcttcacttcagactctggtgg-cttcagac 11514043  T
Q  251 tctggtgacttcagactacagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgtt 350  Q
    |||              ||||||| ||||||||||||| |||||| ||||||| ||||||    |||| |||||||| ||   ||||||||||||||| |    
T  11514044 tcta-------------acagtcaacttctgatggtctccagactctgatgtcctcagactttgacttgcaacaaagattcctttgaaaattcttttgct 11514130  T
Q  351 ctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    ||||||| |||| |||| ||| |||| ||| ||||||||||||||||    
T  11514131 ctcaattgttcttccagaaccaataccttgctttaagacttataaat 11514177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 310
Target Start/End: Original strand, 27851549 - 27851810
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattct-ctgtgtataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||| ||||| ||| ||||||||||||||||||| ||| | ||||||||||| | | | |||||||||||||| ||||||| | |||||||||||    
T  27851549 tggagtagtagagtagtggttgtacaattgtactattgtcctttctctgtccattcttcagcggataagcatccaatgtcttctaacttctctgaaatag 27851648  T
Q  151 ctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgacttcaggttcttcatttcaaactctgatggtcttcagac 250  Q
     ||||||||||  ||||||||| |||| ||  |||||||| |||   ||  ||  |||| ||| || |||||| | || | |||||||    ||||||||    
T  27851649 ttgttgctccatgcttctattccttctgcagacttgtgtcttca---ataaatacaactaactccatgttcttgactttagactctgacaaacttcagac 27851745  T
Q  251 tct-ggtgacttcagact---acagtcagcttctgatggtcttcagactatga-tgtcttcagac 310  Q
    ||| |||||||| |||||    ||||||||||||||||||||||||||| ||| |||||||||||    
T  27851746 tctgggtgactttagactttggcagtcagcttctgatggtcttcagactctgattgtcttcagac 27851810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 12409987 - 12409760
Alignment:
Q  76 caattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattca-- 173  Q
    |||||||||||||  || | || ||||| |||| || | ||||||||||||| |||| |||||||| ||| ||| |||||||  ||   ||||||||       
T  12409987 caattgtactatttgtccttcattgtcctttctttgaggataagcatccaattccttgtaattcctatgagataactgttgcatcaactttctattcccc 12409888  T
Q  174 ttcttcactcttgtgtcatcaaatattcatttaactgacttcaggttcttcatttcaaactctgatggtcttcagac-tct-ggtga-cttcagact--- 267  Q
    |||| |||  ||||||| |||||| | |||||||||  |||||||||||||| |||| ||||||||||||||||| | ||| ||||| |||||||||       
T  12409887 ttctccacatttgtgtcttcaaatttccatttaactaccttcaggttcttcacttcagactctgatggtcttcaggcgtctgggtgatcttcagactctg 12409788  T
Q  268 acagtcagcttctgatggtcttcagact 295  Q
    ||||||| ||||||||||||||||||||    
T  12409787 acagtcatcttctgatggtcttcagact 12409760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 13699427 - 13699508
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaa 196  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| |||| || || |||||| |||||    
T  13699427 ataagcatccaatgccttcttattcctctgaaatagttgttgctccagacttcttttctttctgcaatcatgtgtcttcaaa 13699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 15647962 - 15648087
Alignment:
Q  272 tcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggacc 371  Q
    ||||||| ||||| |||||||||| ||||||||||||||  |||||| |||||||| || ||||| ||||||  ||| ||| |||| |||| |||| |||    
T  15647962 tcagcttatgatgctcttcagactctgatgtcttcagactaaaacttgcaacaaagcttctcttgtaaattcgcttgctcttaatttttcttccagaacc 15648061  T
Q  372 gatacattgttttaagacttataaat 397  Q
     |||| |||||||||||  |||||||    
T  15648062 aataccttgttttaagatgtataaat 15648087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 397
Target Start/End: Original strand, 13932110 - 13932283
Alignment:
Q  227 ttcaaactctgatggtcttcagactctggtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaac 323  Q
    |||| ||||| | |||||||| ||||| |||||  ||||||   || |||||||| | |||||||| ||||| ||||||||||| |  |  |||| ||||    
T  13932110 ttcagactctaaaggtcttcaaactctagtgacaacagactctgactgtcagcttttaatggtctttagactctgatgtcttcaaaatctgacttgcaac 13932209  T
Q  324 aaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    | || ||   ||||||||||||||| | |||||| |||| |||| ||| |||||||||||||||||||||||||    
T  13932210 atagcttcctttgaaaattcttttgctttcaattgttcttccagaaccaatacattgttttaagacttataaat 13932283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 17697679 - 17697741
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||| ||||    
T  17697679 ataagcatccaatgccttcaaattcctctgaattagctattgctccaggcttctattccttct 17697741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 315154 - 315201
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccag 162  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  315154 ataagcattcaatgccttctaattcctctgaaatagccgttgctccag 315201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 13653995 - 13654042
Alignment:
Q  125 aatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  13653995 aatgccttctaattcctctgaaatagttgttgctccaggcttctattc 13654042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 8729084 - 8729022
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||| |||| |||| ||||    
T  8729084 ataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttct 8729022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 9080971 - 9080909
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||| |||| |||| ||||    
T  9080971 ataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttct 9080909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 16882358 - 16882420
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||||||| ||||||||||||||||||||||| | ||| |||| |||| ||||    
T  16882358 ataagcatccaatgccttttaattcctctgaaatagctgttgttgcaggcttccattccttct 16882420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 15552281 - 15552406
Alignment:
Q  272 tcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggacc 371  Q
    |||||||  |||| |||| ||||| ||||||||||||||  | |||| |||||||| || ||||| ||||||  ||| |||||||| |||| |||  |||    
T  15552281 tcagctttcgatgctctttagactctgatgtcttcagactaagacttgcaacaaagcttctcttgtaaattcgcttgctctcaatttttcttccataacc 15552380  T
Q  372 gatacattgttttaagacttataaat 397  Q
     |||| |||||||||||| |||||||    
T  15552381 aataccttgttttaagacgtataaat 15552406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 2903088 - 2903024
Alignment:
Q  332 tcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaa 396  Q
    ||||| ||||||||||| ||||| ||||||| |||| ||| |||| |||||||||||||||||||    
T  2903088 tcttgtaaattcttttgctctcatttattcttccagaaccaataccttgttttaagacttataaa 2903024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 20418301 - 20418353
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttc 167  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||| ||||    
T  20418301 ataagtatccaatgccttctaattcctctgaaatagtcgttgctccagacttc 20418353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 22766675 - 22766557
Alignment:
Q  58 agtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgc 157  Q
    ||||||||| ||| ||||||||||||||||||| |||   |||  |  | || ||| ||||||||||||||||||| |||||||||||| |||| |||||    
T  22766675 agtggagtagtggttgtacaattgtactattgtccttttcctgcgctct-tcagtggataagcatccaatgccttcaaattcctctgaattagccgttgc 22766577  T
Q  158 tccagtcttctattcattct 177  Q
    || || |||| |||| ||||    
T  22766576 tctaggcttccattccttct 22766557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 19658161 - 19658008
Alignment:
Q  24 tgtagcttgtaatatgcgcatgaaatgttggagtagtggag-taatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcat 122  Q
    |||||||| || ||||| || |||||||||||||||||||| || ||| |||||||||||| |||||| ||| ||||| || ||||   || |||| |||    
T  19658161 tgtagcttctactatgcacaggaaatgttggagtagtggagatagtggttgtacaattgtattattgtcctt-cactgccctttcttcatggataaacat 19658063  T
Q  123 ccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||| ||| |||||| ||  ||||| |  |||||| |||||| ||||| ||||    
T  19658062 ccaatgtcttgtaattcttcaaaaatatccattgctctagtcttttattccttct 19658008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 21317460 - 21317542
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaat 197  Q
    ||||||||| |||||||| |||||| ||| ||||||  ||||||| || ||||||||| |||| || || |||||||||||||    
T  21317460 ataagcatcaaatgccttataattcatctaaaatagtcgttgctctaggcttctattccttctgcaatcatgtgtcatcaaat 21317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 15647750 - 15647875
Alignment:
Q  46 aaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctga 145  Q
    |||||||||||||||| |||| ||| |||| |||||||||| ||| ||| |  || || |   | ||| |||||||||||| ||| |||||||||||| |    
T  15647750 aaatgttggagtagtgaagtagtggttgtataattgtactactgtcctttctttgcccttatccagtggataagcatccaaagccatctaattcctctta 15647849  T
Q  146 aatagctgttgctccagtcttctatt 171  Q
    |||||   ||||||||||||| ||||    
T  15647850 aatagtcattgctccagtcttttatt 15647875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 3087606 - 3087681
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtc 190  Q
    |||||||| |||||  ||||||||||||||||| || ||||||| ||| ||||||||| |||| || || ||||||    
T  3087606 ataagcattcaatgtattctaattcctctgaaagagttgttgcttcaggcttctattccttctgcaatcatgtgtc 3087681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 16794371 - 16794336
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16794371 ataagcatccaatgcctcctaattcctctgaaatag 16794336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 13931924 - 13931990
Alignment:
Q  24 tgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgt 90  Q
    ||||||||||| ||||||||   |||   |||||||||||||| ||| |||||||||||||||||||    
T  13931924 tgtagcttgtactatgcgcaaacaatagcggagtagtggagtagtggttgtacaattgtactattgt 13931990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 14077439 - 14077405
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaata 149  Q
    |||||||||||||| ||||||||||||||||||||    
T  14077439 ataagcatccaatgtcttctaattcctctgaaata 14077405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 19197966 - 19197904
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||| |||||||||||||| |||||||||||| |||  |||||||||| |||| |||| ||||    
T  19197966 ataatcatccaatgccttcaaattcctctgaagtagtcgttgctccaggcttccattccttct 19197904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 13654116 - 13654207
Alignment:
Q  227 ttcaaactctgatggtcttcagactctgg-tgacttca-gacta---cagtcagcttctgatggtcttcagactatgat-gtcttcagaccc 312  Q
    |||||||||||||||||||||||| || | |||| ||| ||||    ||||||||||||||||||||||||||| || | ||||||||||||    
T  13654116 ttcaaactctgatggtcttcagacgcttgatgacgtcaagactctggcagtcagcttctgatggtcttcagactctggtagtcttcagaccc 13654207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 4243259 - 4243208
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttc 167  Q
    |||||||| ||||||||| |||||||||||||||||  |||||||||| ||||    
T  4243259 ataagcattcaatgcctt-taattcctctgaaatagtcgttgctccagacttc 4243208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 17687947 - 17688071
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactattgttcttccactgtccattctctgtg 113  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| || ||||| |||| ||||    
T  17687947 agacacagttgtagcttgtaatatgcgcaggaaatgttggagtagtggaggtagtggttgtacaattgtactattgtcctt-cattgtcctttctttgtg 17688045  T
Q  114 tataagcatccaatgccttctaattc 139  Q
     |||||||||||| ||||||||||||    
T  17688046 gataagcatccaaagccttctaattc 17688071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 19505590 - 19505312
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattctct-gtgtataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||| || ||  |  ||| | |||  ||||||| |||||||||||||||||||||||||||    
T  19505590 tggagtagtggagtagtggttgtacaattgtactattgtcctttca-tgagc--tctatagtgggtaagcattcaatgccttctaattcctctgaaatag 19505494  T
Q  151 ctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattca--tttaactgacttcaggttcttcatttcaaactctgatggtcttcag 248  Q
    | ||||||| ||  |||||||| |||| ||  |||||||| |||||||  ||  ||||||| ||| ||||||||| | |||| |||||||    ||||||    
T  19505493 ccgttgctcgaggattctattccttctgcaaacttgtgtcttcaaataaccaactttaactaactccaggttcttgacttcagactctgacaaacttcag 19505394  T
Q  249 actct-ggtgacttcagact---acagtcagcttctgatg-gtcttcagactatgat-gtcttcagacccaaacttccaaca 324  Q
    ||||| ||||||||||||||    ||||||||||||||||  |||||| ||| |||| |||||||||| || |||| |||||    
T  19505393 actctgggtgacttcagactttggcagtcagcttctgatgaatcttcaaactctgatggtcttcagactcagacttgcaaca 19505312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 310
Target Start/End: Original strand, 12541699 - 12541892
Alignment:
Q  121 atccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattca-tttaactgacttcaggt 219  Q
    ||||||||||||||||||||||| ||||||  ||| |||||| ||||||||  |||| ||  |||||| | |||||||  || ||||| |||||| ||||    
T  12541699 atccaatgccttctaattcctctaaaatagtcgtttctccaggcttctatttcttctgcaaacttgtg-cttcaaataaccactttaattgactttaggt 12541797  T
Q  220 tcttcatttcaaactctgatggtcttcagactct-ggtgacttcagact---acagtcagcttctgatggtcttcagactatgatgtcttcagac 310  Q
    |||| | |||  |||||||||  ||||||||||| |||||||||| |||   |  ||||||||||||||||||||||||| |||| |||||||||    
T  12541798 tctttacttctgactctgatgaacttcagactctaggtgacttcatactctgattgtcagcttctgatggtcttcagactctgatttcttcagac 12541892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 27739925 - 27740067
Alignment:
Q  108 tctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcat-tta 206  Q
    |||||| ||||| |||||| |||||||||||| || |||||| | |||| |||| |||| ||||| |||| ||   ||||||| |||||||| |||  ||    
T  27739925 tctgtggataagaatccaaagccttctaattcttcagaaatatccgttgatccaatcttttattccttctgcatatttgtgtcttcaaatatccataata 27740024  T
Q  207 actgacttcaggttcttcatttcaaactctgatggtcttcaga 249  Q
    ||| ||||||||||||||||||||   ||||||| ||||||||    
T  27740025 actaacttcaggttcttcatttcagcttctgatgatcttcaga 27740067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 24635283 - 24635403
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtactat-tgttcttccactgtccattctct 110  Q
    |||||||||| ||||||||||| ||| |||||| ||||||||| ||||||| ||| ||| |||||||||| ||||| ||| ||| || ||||| ||||||    
T  24635283 agagacacaactgtagcttgtactatacgcatgtaatgttggactagtggaggtagtggttgtacaattgaactatctgtgctt-cattgtcctttctct 24635381  T
Q  111 gtgtataagcatccaatgcctt 132  Q
    | | |||||||||||| |||||    
T  24635382 gagaataagcatccaaagcctt 24635403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 12193968 - 12194023
Alignment:
Q  117 aagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||| ||||| |||||||||| ||||| ||||| |||||||||    
T  12193968 aagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttctattc 12194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 12438396 - 12438451
Alignment:
Q  117 aagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||| ||||| |||||||||| ||||| ||||| |||||||||    
T  12438396 aagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttctattc 12438451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 17916911 - 17916849
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||| |||||||||||||||||||||| ||||||  |||||||||| |||| |||| ||||    
T  17916911 ataagcttccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttct 17916849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 1208709 - 1208589
Alignment:
Q  120 catccaatgccttctaattcctctgaaatagctgtt-gctccagtcttctattcattcttcactcttgtgtcatcaaatattc--atttaactgacttca 216  Q
    |||||||||||||| ||||||||||||||||  ||| || |||| ||||||||| |||| ||  |||||||| |||||||  |  |||||||| ||| ||    
T  1208709 catccaatgccttcaaattcctctgaaatagtcgttggccccaggcttctattccttctacaaacttgtgtcttcaaataaccaaatttaactaactcca 1208610  T
Q  217 ggttcttcatttcaaactctg 237  Q
    ||||||| | |||| ||||||    
T  1208609 ggttcttgacttcagactctg 1208589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 27276324 - 27276184
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattc-t 108  Q
    ||||||||||||||||||||||||| ||| ||||   ||||  |||||||||||| | ||| ||||||||||||||||||| ||| | |||| ||||| |    
T  27276324 agcagagacacaattgtagcttgtactattcgcagacaatggaggagtagtggagaagtggttgtacaattgtactattgtcctttctctgtgcattctt 27276225  T
Q  109 ctgtgtataagcatccaatgccttctaattcctctgaaata 149  Q
    | ||| |||||||| ||||||||||||||||||||||||||    
T  27276224 cagtggataagcattcaatgccttctaattcctctgaaata 27276184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 31589083 - 31589025
Alignment:
Q  119 gcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  31589083 gcatccaatgccttttaattcctctgaattagctgttgctccaggcttctattccttct 31589025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 20237349 - 20237192
Alignment:
Q  243 cttcagactctgg-tgacttcagacta---cagtcagcttctgatggtcttcagactatgat-gtcttcagacccaaacttccaacaaagtttgtcttga 337  Q
    ||||||||||||| ||||||||||||    |||||||||||||||| |||||||||| |||| |||||||||| || |||| |||| ||| || | || |    
T  20237349 cttcagactctgggtgacttcagactctcgcagtcagcttctgatgttcttcagactctgatggtcttcagactcagacttgcaac-aagcttcttttta 20237251  T
Q  338 aaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaa 396  Q
    ||| || |||| ||||| || |||| |||| ||| |||| |||||| ||||||||||||    
T  20237250 aaaatcctttgctctcatttgttcttccagaaccaatactttgtttaaagacttataaa 20237192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 17262863 - 17262750
Alignment:
Q  58 agtggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgc 157  Q
    ||||||||| ||| ||||||||||||||||||| |||   |||  |  | || ||| |||||||||||||||||||| |||||||||||||||   ||||    
T  17262863 agtggagtagtggttgtacaattgtactattgtcctttacctgcgctct-tcagtggataagcatccaatgccttctcattcctctgaaatagtcattgc 17262765  T
Q  158 tccagtcttctattc 172  Q
    ||||| |||||||||    
T  17262764 tccaggcttctattc 17262750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 2152987 - 2152918
Alignment:
Q  108 tctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||| |||||||| ||||| |||| ||||| |||||||||| ||||||||||| ||||||||| ||||    
T  2152987 tctgtgaataagcattcaatgtcttccaattcttctgaaatagttgttgctccaggcttctattccttct 2152918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 16607581 - 16607638
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||| |||||||||    
T  16607581 ataagcttccaatgccttcaaattcctctgaattagccgttgctccaggcttctattc 16607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 20237457 - 20237400
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||| || |||||||||    
T  20237457 ataagcatcaaatgccttctaattcctctgaaatagtcgttgctcaaggcttctattc 20237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 26119899 - 26119842
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||| |||| ||||    
T  26119899 ataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattc 26119842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 23589780 - 23589827
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccag 162  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  23589780 ataaccatccaatgccttctaattcctctgaaatagtcgttgctccag 23589827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 39798956 - 39798894
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||| |||||||| |||||||||||  |||||||||| ||| ||||| ||||    
T  39798956 ataagcatccaatgctttctaatttctctgaaatagtcgttgctccagccttttattccttct 39798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 26118473 - 26118408
Alignment:
Q  332 tcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    ||||||||||||||||| ||| |||| |||| |||| ||| |||| |||||||||||| |||||||    
T  26118473 tcttgaaaattcttttgctctaaattgttcttccagaaccaatactttgttttaagacatataaat 26118408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 27057387 - 27057444
Alignment:
Q  120 catccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||||||||||||||||||||   |||||| |||||| ||||| ||||    
T  27057387 catccaatgccttctaattcctctgaaatagtcattgctctagtcttttattccttct 27057444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 34638515 - 34638572
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||| |||||||||||||| |||||||||||| |||| |||||||||| |||| ||||    
T  34638515 ataaacatccaatgccttcaaattcctctgaattagccgttgctccaggcttccattc 34638572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 20567870 - 20567917
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccag 162  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||    
T  20567870 ataagcatccaatgccttcaaattcctctgaagtagtcgttgctccag 20567917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26055703 - 26055661
Alignment:
Q  15 agacacaattgtagcttgtaatatgcgcatgaaatgttggagt 57  Q
    |||||||||||||||||||| |||||| | |||||||||||||    
T  26055703 agacacaattgtagcttgtattatgcgtaggaaatgttggagt 26055661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 26118780 - 26118656
Alignment:
Q  16 gacacaattgtagcttgtaatatgcgcatgaaa-tgttggagtagt-ggagtaatggctgtacaattgtactat-tgttcttccactgtccattctctgt 112  Q
    |||||||  |||||||||| ||||| ||||||| |||||||||||| || ||| ||| |||||||||||||||| ||| |||  ||||||| || ||| |    
T  26118780 gacacaacagtagcttgtactatgcacatgaaaatgttggagtagtgggggtagtggttgtacaattgtactatatgtcctt-tactgtcctttttct-t 26118683  T
Q  113 gtataagcatccaatgccttctaattc 139  Q
     || |||||||||| ||||||||||||    
T  26118682 ataaaagcatccaaagccttctaattc 26118656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 13692478 - 13692547
Alignment:
Q  108 tctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||| |||||||| ||||| |||||||||||||| ||||||   |||||| || ||||||||| ||||    
T  13692478 tctgtggataagcattcaatgtcttctaattcctctaaaatagtcattgctcgaggcttctattccttct 13692547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 22586075 - 22585994
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaa 196  Q
    |||||||| ||||||||||| | || ||| ||||||  |||||||||| ||||||||| |||| |  ||||||||| |||||    
T  22586075 ataagcattcaatgccttcttagtcttctaaaatagtcgttgctccaggcttctattccttctgctgtcttgtgtcttcaaa 22585994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 27276098 - 27276043
Alignment:
Q  243 cttcagactctggtgacttcagact---acagtcagcttctgatggtcttcagact 295  Q
    ||||||||||||||| ||| |||||   || |||||||||||||||||||||||||    
T  27276098 cttcagactctggtggctttagactcaaactgtcagcttctgatggtcttcagact 27276043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 397
Target Start/End: Original strand, 5454 - 5736
Alignment:
Q  121 atccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaat-attcatttaactgacttcaggt 219  Q
    ||||||||||||| |||||||||||| |||| |||||||||| |||||||||  ||| ||  |||||||| |||||| ||  || ||||| | | |||||    
T  5454 atccaatgccttcaaattcctctgaattagccgttgctccaggcttctattccatctgcaaacttgtgtcttcaaataataaatataactaattccaggt 5553  T
Q  220 tcttcatttcaaactctgatggtcttcagactct-ggtgacttcagact---acagtcagcttctgatggtcttcagactatga-tgtcttcagacccaa 314  Q
    |||||| |||| | ||||| |  ||||||| ||| ||||||||| ||||     ||||||| |||||||| ||||||||| ||| |||||||| || ||     
T  5554 tcttcacttcagattctgacgaacttcagattctgggtgacttctgactctggtagtcagcatctgatggccttcagactctgattgtcttcaaactcag 5653  T
Q  315 acttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||| | ||| || ||  |||||||| | ||||| | |||||| |||| |||| ||| |||| |||||| |||||||||||||    
T  5654 acttgcgacatagcttcccttgaaaactattttgctttcaattgttcttccagaaccaataccttgtttaaagacttataaat 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 8076 - 8189
Alignment:
Q  36 tatgcgcatgaaatgttggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattct-ctgtgtataagcatccaatgccttct 134  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | ||| |  || || |||| | ||| |||| |||||||||||||||    
T  8076 tatgcgcatgaaatgttggagtagtggagtagtggttgtacaattatactattatcctttctatgacc-ttctccagtggataatcatccaatgccttct 8174  T
Q  135 aattcctctgaaata 149  Q
    |||||||||||||||    
T  8175 aattcctctgaaata 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 8296 - 8422
Alignment:
Q  271 gtcagcttctgatggtcttcagactatgatgtcttcagacccaaacttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggac 370  Q
    ||||||||||||||||||||||||| ||||| |||||||  |  |||| |||| ||| ||   ||| ||||||||||| ||||| || ||||  ||| ||    
T  8296 gtcagcttctgatggtcttcagactctgatgacttcagattcttacttgcaactaagcttccgttgtaaattcttttgctctcatttgttctttcagaac 8395  T
Q  371 cgatacattgttttaagacttataaat 397  Q
    | |||| ||||||||||||||||||||    
T  8396 caataccttgttttaagacttataaat 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 284
Target Start/End: Original strand, 4278 - 4514
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactgtccattct-ctgtgtataagcatccaatgccttctaattcctctgaaatag 150  Q
    ||||||||||||||| ||| |||||||||||||||||||  ||   |||  | |||| | ||| ||||||||| ||||||||||||||||||||||||||    
T  4278 tggagtagtggagtagtggttgtacaattgtactattgtcattttcctg--cgttcttcagtggataagcatcaaatgccttctaattcctctgaaatag 4375  T
Q  151 ctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattca--tttaactgacttcaggttcttcatttcaaactctgatggtcttcag 248  Q
      |||||||||| ||| ||||| ||||  | ||||||||  |||||||  ||  ||||||| ||| ||| ||||| | |||| |||||||||  ||| ||    
T  4376 tcgttgctccaggcttttattccttctgaaatcttgtgttttcaaataaccaactttaactaactccagcttcttgacttcagactctgatgaactttag 4475  T
Q  249 actctggtgacttcagacta---cagtcagcttctgatg 284  Q
    ||| || |||| | ||||||   |||||| |||||||||    
T  4476 actttgatgacattagactatggcagtcaacttctgatg 4514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 13027843 - 13027905
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||    
T  13027843 ataagcatccaatgccttctaattcctctgaaatagccgttgctccaggcttccattccttct 13027905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 17812342 - 17812286
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctatt 171  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||    
T  17812342 ataagcatccaatgccttctaattcctctgaaatagccgttgctccaaacttctatt 17812286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 20571047 - 20570985
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  20571047 ataagcatcaaatgccttctaattcctctgaaatagtcgttgctccagacttctattccttct 20570985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 14357179 - 14357122
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  14357179 ataaccatccaatgccttctaattcctctgaaatagacattgctccaggcttctattc 14357122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 23087695 - 23087803
Alignment:
Q  60 tggagtaatggctgtacaattgtactattgttcttccactgtccattctctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    ||||||| ||| |||||||||||||||||  || | || ||||| |||| || | |||||||||||| |||||||||||| || | |||| | |||||||    
T  23087695 tggagtagtggttgtacaattgtactatttgtccttcattgtcctttctatgaggataagcatccaaagccttctaattcttcag-aatatccgttgctc 23087793  T
Q  160 cagtcttcta 169  Q
    ||||||||||    
T  23087794 cagtcttcta 23087803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 18394599 - 18394780
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaatattcatttaactgactt 214  Q
    |||||| || |||||||| ||||||||||||||| |  |||||||||| ||||||||| || | ||  |||||||  |||   ||  || ||||| |||     
T  18394599 ataagcctcaaatgccttataattcctctgaaatggtcgttgctccagacttctattccttatgcaaacttgtgtgttca---ataaatataactaactc 18394695  T
Q  215 caggttcttcatttcaaactctgatggtcttcagactct-ggtgacttcagact---acagtcagcttctgatggtcttcagact 295  Q
    ||||||||| | |||| ||||||| |  ||||| ||| | ||||||||||||||   | ||||||||||||||||||||||||||    
T  18394696 caggttcttgacttcagactctgacgaacttcaaactatgggtgacttcagactctgagagtcagcttctgatggtcttcagact 18394780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 2651863 - 2651920
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    |||||||| |||||||||||||||||||||||||||  ||| |||||  |||||||||    
T  2651863 ataagcattcaatgccttctaattcctctgaaatagtcgttactccaagcttctattc 2651920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 20577349 - 20577430
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaa 196  Q
    ||||| |||||||||||||||||| ||||||||||||  ||||| ||| ||||||||  |||| ||  |||||||| |||||    
T  20577349 ataagaatccaatgccttctaatttctctgaaatagccattgcttcaggcttctatttcttctgcagacttgtgtcttcaaa 20577430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 2940410 - 2940482
Alignment:
Q  13 agagacacaattgtagcttgtaatatgcgcatg-aaatgttggagtagtgga-gtaatggctgtacaattgta 83  Q
    ||||||||| |||||||||||| ||||| |||| |||||||||||||||| | ||| ||| ||||||||||||    
T  2940410 agagacacagttgtagcttgtactatgcacatgaaaatgttggagtagtgaaggtagtggttgtacaattgta 2940482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 16324564 - 16324529
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatag 150  Q
    |||||||| |||||||||||||||||||||||||||    
T  16324564 ataagcatacaatgccttctaattcctctgaaatag 16324529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 10249879 - 10249941
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||||||||||| |||| ||||||||| || ||| |||||||| || ||||||||| ||||    
T  10249879 ataagcatccaatgacttcaaattcctcttaattagttgttgctctagacttctattccttct 10249941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 17812209 - 17812127
Alignment:
Q  315 acttccaacaaagtttgtcttgaaaattcttttgttctcaattattctaccaggaccgatacattgttttaagacttataaat 397  Q
    |||| |||||||  || ||||| ||||| | ||| ||||||||  ||| |||| ||| |||||||||||||||||||||||||    
T  17812209 acttgcaacaaaacttctcttgtaaattatgttgctctcaattgctcttccagaaccaatacattgttttaagacttataaat 17812127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 18774112 - 18774174
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||| ||||||||||||||||||  |||||| |||||||| || | ||||||| ||||    
T  18774112 ataagcatctaatgccttctaattcctcctaaatagttgttgctctaggcatctattccttct 18774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 17526540 - 17526491
Alignment:
Q  10 agcagagacacaattgtagcttgtaatatgcgcatgaaatgttggagtag 59  Q
    |||||| |||| | ||||||||||| |||||| |||||||||||||||||    
T  17526540 agcagaaacaccaatgtagcttgtactatgcgaatgaaatgttggagtag 17526491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 24619628 - 24619689
Alignment:
Q  24 tgtagcttgtaatatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgtac 84  Q
    |||| |||||| || ||||| ||||||||||||||||||| ||| ||| |||||||||||||    
T  24619628 tgtaacttgtactacgcgcaggaaatgttggagtagtggaggtagtggttgtacaattgtac 24619689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 14902505 - 14902445
Alignment:
Q  117 aagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||||| || ||||||||||||||||| ||||||  |||||||||  ||||||||| ||||    
T  14902505 aagcattcactgccttctaattcctctaaaatagtcgttgctccaagcttctattccttct 14902445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 41114811 - 41114759
Alignment:
Q  117 aagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttcta 169  Q
    ||||||||||||||||| ||||| | ||||||||| |||||| || |||||||    
T  41114811 aagcatccaatgccttcaaattcatttgaaatagccgttgcttcattcttcta 41114759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 3353 - 3192
Alignment:
Q  108 tctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtcatcaaat-attcattta 206  Q
    |||||| ||||||||||||||||||| ||||||||||||||||   ||||||||| ||| ||||| |||| ||  |||||||| || ||| ||  || ||    
T  3353 tctgtggataagcatccaatgccttcaaattcctctgaaatagtcattgctccagacttttattccttctgcaaacttgtgtcttcgaataataaatata 3254  T
Q  207 actgacttcaggttcttcatttcaaactctgatggtcttcagactct-ggtgacttcagact 267  Q
    ||  ||| ||| ||||||| |||| ||||||| |  ||||||| ||| ||||||||||||||    
T  3253 acaaactccagattcttcacttcagactctgacgaacttcagattctgggtgacttcagact 3192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 3443 - 3379
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttc 179  Q
    ||||||||| |||||||||||||||||||||||||||  |||||| || ||||||||| ||||||    
T  3443 ataagcatcgaatgccttctaattcctctgaaatagccattgctctaggcttctattccttcttc 3379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 2728 - 2792
Alignment:
Q  113 gtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||| ||||||||||||| ||||||||| ||||||  |||||||||| ||| ||||| ||||    
T  2728 gtataagtatccaatgccttccaattcctctaaaatagtcgttgctccaggcttttattctttct 2792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 2443 - 2343
Alignment:
Q  72 tgtacaattgtactattgttcttccactgtccattct-ctgtgtataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctat 170  Q
    |||| |||||||||||||| ||| | ||||| ||||| | |||  |||||||||||||||||||||||||||| ||||||  |||||| ||||||| |||    
T  2443 tgtataattgtactattgtcctttctctgtc-attcttcagtgggtaagcatccaatgccttctaattcctctaaaatagtcgttgcttcagtcttatat 2345  T
Q  171 tc 172  Q
    ||    
T  2344 tc 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 16459 - 16403
Alignment:
Q  116 taagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||||||||| |||| ||||||  |||||| |||||||||||||    
T  16459 taagcatccaatgccttctaatttctctaaaatagtcgttgcttcagtcttctattc 16403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 920 - 874
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctcca 161  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  920 ataagcatccaatgtcttctaaatcctctgaaatagttgttgctcca 874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 31694 - 31756
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||| ||||||||||||| | ||||||  |||||||||| ||||||||| ||||    
T  31694 ataagcatccaattccttctaattcctttaaaatagtcgttgctccaggcttctattccttct 31756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 59628 - 59690
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    |||| |||||||||||||||||||||||| ||||||  |||||||||| |||| |||| ||||    
T  59628 ataaccatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttct 59690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 416083 - 416025
Alignment:
Q  122 tccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttca 180  Q
    |||||||||||||||||| | ||||||||  |||||||||| ||||||||| |||||||    
T  416083 tccaatgccttctaattcatttgaaatagtcgttgctccaggcttctattccttcttca 416025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 773 - 826
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttct 168  Q
    ||||||||||||||||||  |||| |||||||||||  |||||||||| |||||    
T  773 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttct 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 1451 - 1499
Alignment:
Q  52 tggagtagtggagtaatggctgtacaattgtactattgttcttccactg 100  Q
    ||||||||||||||  ||| ||||||||||||||||||| ||| |||||    
T  1451 tggagtagtggagttgtggttgtacaattgtactattgtcctttcactg 1499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 29867 - 29924
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattc 172  Q
    ||||||||||||||||||| ||||| |||||| |||  |||||||||| |||||||||    
T  29867 ataagcatccaatgccttccaattcatctgaattagtcgttgctccaggcttctattc 29924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 9293 - 9221
Alignment:
Q  118 agcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtc 190  Q
    ||||||||||||||||||||||||| |||||| | ||||||  || ||| ||||| |||| || |||||||||    
T  9293 agcatccaatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgcaatcttgtgtc 9221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 112277 - 112349
Alignment:
Q  118 agcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtc 190  Q
    ||||||||||||||||||||||||| |||||| | ||||||  || ||| ||||| |||| || |||||||||    
T  112277 agcatccaatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgcaatcttgtgtc 112349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 4062 - 3987
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattcttcactcttgtgtc 190  Q
    |||| |||| ||| ||||||||||||| ||||||||| ||| |||||  ||||||||| |||| || |||||||||    
T  4062 ataaacatcaaattccttctaattcctatgaaatagccgttcctccaaacttctattccttctgcaatcttgtgtc 3987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 20138 - 20200
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctccagtcttctattcattct 177  Q
    ||||||||||||||| ||||||||| ||||||||||  ||||||| || |||| |||| ||||    
T  20138 ataagcatccaatgctttctaattcttctgaaatagtcgttgctctaggcttccattccttct 20200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 10446 - 10402
Alignment:
Q  115 ataagcatccaatgccttctaattcctctgaaatagctgttgctc 159  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||    
T  10446 ataaacatccaatgccttctaatttctctgaaatagtcgttgctc 10402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 104851 - 104899
Alignment:
Q  36 tatgcgcatgaaatgttggagtagtgga-gtaatggctgtacaattgta 83  Q
    |||||||| ||||||||||||||||||| ||| ||| ||||||||||||    
T  104851 tatgcgcaggaaatgttggagtagtggaggtagtggttgtacaattgta 104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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