View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_28 (Length: 379)
Name: NF9954_low_28
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 27610809 - 27611164
Alignment:
| Q |
1 |
ttcagaaaccatatttgttttttcttcctttctctttctatccgttagaaagagtgagagaaaaagaagctcctcctccttgtgtctgaggtgtgtctgc |
100 |
Q |
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| T |
27610809 |
ttcagaaaccatatttgttttttcttccttt------ctatccgttagaaagagtgagagaaaaagaagctcctcctccttgtgtctgaggtgtgtctgc |
27610902 |
T |
|
| Q |
101 |
atgtgtatgttaaatgtttcagtaacagcaacacaaactgtagcctatagctatggatgattacactatcatccaataatgtgtacggttgattgcaggt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27610903 |
atgtgtatgttaaatgtttcagtaaaagcaacacaaactgtagcctatagctatggatgattacactatcatccaataatgtgtacggttgattgcaggt |
27611002 |
T |
|
| Q |
201 |
tcaagaatattttgaaataaacaccctaaaagacgctcaacacatagcaatcaattattcacaaatgccatatacactaacacaactttttcttttcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27611003 |
tcaagaatattttgaaataaacaccctaaaagacgctcaacacatagcaatcaattattcacaaatgccatatacactaacacaactttttcttttcatt |
27611102 |
T |
|
| Q |
301 |
ttcataacatggcaaggcctgtgtgtgtgtagtcttcttttgctttttggctgcttttgtttct |
364 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27611103 |
ttcataacatggcaaggcc--tgtgtgtgtagtcttcttttgctttttggctgcttttgtttct |
27611164 |
T |
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