View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_30 (Length: 356)
Name: NF9954_low_30
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 716791 - 717117
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
716791 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
716890 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatcaaatttcttcagaacttctcaccaaggctcttcaattggacaataacatagttgaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
716891 |
tcaagagttatcactattattaaggaggtatttgggtctaatcaaatttcttcagaacttctcaccaaggctcttcaagtggacaataacatagttgaca |
716990 |
T |
|
| Q |
211 |
atcttcagaaacaattctggttggacaacaattagaatttatctcaattattgttggttttttgttaaatgaatttaaaataaacacatagtgaggtgtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
716991 |
atcttcagaaacaattctggttggacaacaattagaatttatctcaattattgttggttttttgttaaatgaatttaaaataaacacatagtgaggtgtg |
717090 |
T |
|
| Q |
311 |
ccaaagattcatcaagttttgagagct |
337 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
717091 |
ccaaagattcatcaagttttgagagct |
717117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 702505 - 702274
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||| ||| ||||||||| |||||| ||| |
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| T |
702505 |
caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat |
702406 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaattggacaataacatagttg |
207 |
Q |
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|| | || ||||| ||| ||| | |||||||| ||||||| |||| ||||||||| |||||||||| ||| ||||| | |||||||| ||||| | |
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| T |
702405 |
ccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg |
702306 |
T |
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| Q |
208 |
acaatcttcagaaacaattctggttggacaac |
239 |
Q |
| |
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|||||||||| |||||||||||| |||||||| |
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| T |
702305 |
acaatcttcaaaaacaattctgggtggacaac |
702274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 717807 - 717568
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||| ||| ||||||||| |||||| ||| |
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| T |
717807 |
caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat |
717708 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaattggacaataacatagttg |
207 |
Q |
| |
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| | || ||||| ||| ||| | |||||||| ||||||| |||| ||||||||| |||||||||| ||| ||||| | |||||||| ||||| | |
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| T |
717707 |
cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg |
717608 |
T |
|
| Q |
208 |
acaatcttcagaaacaattctggttggacaacaattagaa |
247 |
Q |
| |
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|||||||||| |||||||||||| |||||||||| ||||| |
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| T |
717607 |
acaatcttcaaaaacaattctgggtggacaacaactagaa |
717568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 710774 - 710533
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||| ||| ||||||||| |||||| ||| |
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| T |
710774 |
caaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaat |
710675 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaattggacaataacatagttg |
207 |
Q |
| |
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| | || ||||| ||| ||| | |||||||| ||||||| |||| ||||||||| |||||||||| ||| ||||| | |||||||| ||||| | |
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| T |
710674 |
cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg |
710575 |
T |
|
| Q |
208 |
acaatcttcagaaacaattctggttggacaacaattagaatt |
249 |
Q |
| |
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|||||||||| |||||||| ||| |||||||||| ||||||| |
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| T |
710574 |
acaatcttcaaaaacaattttgggtggacaacaactagaatt |
710533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 712933 - 713174
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||| ||| ||| | ||| |||||||||| |||| ||| ||||||||| |||||| ||| |
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| T |
712933 |
caaaggagatgtgtttgtgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaat |
713032 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaattggacaataacatagttg |
207 |
Q |
| |
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| | || ||||| ||| ||| | |||||||| ||||||| |||||||||||||| |||||||||| ||| ||||| | |||||||| ||||| | |
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| T |
713033 |
cctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtgg |
713132 |
T |
|
| Q |
208 |
acaatcttcagaaacaattctggttggacaacaattagaatt |
249 |
Q |
| |
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| T |
713133 |
ataatcttcaaaaacaattctgggtggacaacaactagaatt |
713174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 722675 - 722869
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataat |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| | ||||||| || |||||||||||||||| ||||||||| ||| ||| || ||| |
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| T |
722675 |
caaaggagatgtttttgtgtttccaattggtctcattcacttcgagcataatacaggagatggaaatgcggttgcaatttctggatttagcagtcaaaat |
722774 |
T |
|
| Q |
111 |
tcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaattggacaataacat |
202 |
Q |
| |
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|| || | ||| |||||||||||| ||||| || ||||| ||| || |||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
722775 |
ccaggaatcatccgtattattaaggatacatttgagtttaatccaaaaaattattcagaacttctcaccaaggcttttcaaatggacaataacat |
722869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 20357928 - 20357822
Alignment:
| Q |
18 |
gatgtctttgtgtttccaattggtcttattcacttccaacataatatgggggatggaaatgcggttgtcatttctggacttaacagccataattcaagag |
117 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || |||| ||| |||| |||| ||||| |||| ||| ||||||||| ||| || ||| || ||| |
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| T |
20357928 |
gatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatccaggag |
20357829 |
T |
|
| Q |
118 |
ttatcac |
124 |
Q |
| |
|
||||||| |
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|
| T |
20357828 |
ttatcac |
20357822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 35313621 - 35313666
Alignment:
| Q |
11 |
caaaggagatgtctttgtgtttccaattggtcttattcacttccaa |
56 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||| |||||||||||| |
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| T |
35313621 |
caaaggtgatgtatttgtgtttccaatcggtctcattcacttccaa |
35313666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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