View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_31 (Length: 336)

Name: NF9954_low_31
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_31
NF9954_low_31
[»] chr8 (2 HSPs)
chr8 (4-329)||(44248985-44249309)
chr8 (161-320)||(44252749-44252910)
[»] chr7 (16 HSPs)
chr7 (5-128)||(11807904-11808027)
chr7 (212-329)||(11813805-11813922)
chr7 (213-329)||(11814926-11815042)
chr7 (217-321)||(11808266-11808370)
chr7 (213-329)||(11816388-11816504)
chr7 (215-328)||(11811278-11811391)
chr7 (212-304)||(11810331-11810423)
chr7 (215-329)||(11820904-11821018)
chr7 (212-304)||(11811986-11812078)
chr7 (246-304)||(11815905-11815963)
chr7 (212-321)||(11819923-11820032)
chr7 (217-290)||(11808678-11808751)
chr7 (144-191)||(11809564-11809611)
chr7 (251-304)||(11809659-11809712)
chr7 (215-328)||(11812870-11812983)
chr7 (139-191)||(11815793-11815845)
[»] chr5 (1 HSPs)
chr5 (5-78)||(15274306-15274379)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 329
Target Start/End: Original strand, 44248985 - 44249309
Alignment:
Q  4 gctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaagt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44248985 gctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaagt 44249084  T
Q  104 gaattgtcgaatataaacaagatttnnnnnnnttgtgtagccataacatagccgcaattgatttgatgttgcatcccctaatgtttacccgtgacaacaa 203  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44249085 gaattgtcgaatataaacaagatttaaaaaaattgtgtagccataacatagccgcaattgatttgatgttgcatcccctaatgtttactcgtgacaacaa 44249184  T
Q  204 nnnnnnnngaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcc 303  Q
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44249185 -tttttttgaaatatgtgtcaccataatgtgattgaaattagtttgataagataagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcc 44249283  T
Q  304 atcgaaggaggtgtgatgtccatctc 329  Q
    |||||||||||||||||| |||||||    
T  44249284 atcgaaggaggtgtgatgcccatctc 44249309  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 44252749 - 44252910
Alignment:
Q  161 ttgatttgatgttgcatcccctaatgtttacccgtgacaacaannnnnnnn-gaaatatgtgtcaccataatgtgattgaaa-ttagtttgataagagaa 258  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||         ||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  44252749 ttgatttgatgttgcgtcccctaatgtttattcgtgaaaacaatttttttttgaaatttgtgttaccataatgtgattgaaaattaatttgataagagaa 44252848  T
Q  259 gaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtgtgat 320  Q
    |||||||||||||||| |||||   | |||||||||||||||||||| | ||||||| ||||    
T  44252849 gaaagtgttgtaacacttacttgtatcctcttccgtgaagtttccattggaggaggtatgat 44252910  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 11807904 - 11808027
Alignment:
Q  5 ctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaaaatgaaaagaataattaggtcaagtg 104  Q
    |||||||||||||||||||||||||| | ||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |     
T  11807904 ctctcttgtcatgaacccaattgccaattaaatagtcacatgatttctcaagaggtttttccttttctgccaaaaatgaaaagaataatcaggtctacta 11808003  T
Q  105 aattgtcgaatataaacaagattt 128  Q
    |||||  ||||| |||||||||||    
T  11808004 aattgatgaatagaaacaagattt 11808027  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 11813805 - 11813922
Alignment:
Q  212 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 311  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |   ||    
T  11813805 gaaatatgtgttaccataatatgattgaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagggg 11813904  T
Q  312 aggtgtgatgtccatctc 329  Q
    |||| ||||||| |||||    
T  11813905 aggtatgatgtcgatctc 11813922  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 11814926 - 11815042
Alignment:
Q  213 aaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagga 312  Q
    |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||| |    ||    
T  11814926 aaatatgtgttaccataatatgattgaaatgaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggaga 11815025  T
Q  313 ggtgtgatgtccatctc 329  Q
    ||| |||||||||||||    
T  11815026 ggtatgatgtccatctc 11815042  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 321
Target Start/End: Original strand, 11808266 - 11808370
Alignment:
Q  217 atgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtg 316  Q
    |||||| |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||| ||||||| |||     
T  11808266 atgtgttaccatagtgtgactaaaattaatttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccgtcgaaggtggtc 11808365  T
Q  317 tgatg 321  Q
    |||||    
T  11808366 tgatg 11808370  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 11816388 - 11816504
Alignment:
Q  213 aaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagga 312  Q
    |||||||| | | |||||| | |||||||||| ||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||||| |  || |    
T  11816388 aaatatgtattatcataatatcattgaaattaatttgataagtgaagaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagaa 11816487  T
Q  313 ggtgtgatgtccatctc 329  Q
    ||| |||||||||||||    
T  11816488 ggtatgatgtccatctc 11816504  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 11811278 - 11811391
Alignment:
Q  215 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 314  Q
    |||||||| |||||| ||||| | |||||  |||||||| ||||||||||||| |||||||||||| | ||||||| |||||||||||||||  ||||||    
T  11811278 atatgtgttaccatattgtgactaaaattgatttgataaaagaagaaagtgttataacacgtacttggattctctttcgtgaagtttccatcagaggagg 11811377  T
Q  315 tgtgatgtccatct 328  Q
    | ||| ||||||||    
T  11811378 tctgacgtccatct 11811391  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 11810331 - 11810423
Alignment:
Q  212 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcca 304  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||| ||| | ||||||||||||||| | |||||||| || |||||||||    
T  11810331 gaaatatgtgttaccataatatgattgaaattaatttgataagagaataaaatattgtaacacgtacttagattctcttctgtaaagtttcca 11810423  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 11820904 - 11821018
Alignment:
Q  215 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 314  Q
    |||||||| |||||| | ||| | |||||  ||| || |||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||    
T  11820904 atatgtgttaccatagtatgactaaaattgattttattagagaagaaagtgttgtaacacgtacttagatcctcttccgtgaagttcccatcgaaggagg 11821003  T
Q  315 tgtgatgtccatctc 329  Q
    |  |||| |||||||    
T  11821004 tccgatgcccatctc 11821018  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 11811986 - 11812078
Alignment:
Q  212 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcca 304  Q
    |||||| |||| |||||||| |||||||||||| ||||| || |||||||| ||||||||||| ||||| | ||||||||||| |||||||||    
T  11811986 gaaatacgtgttaccataatatgattgaaattaatttgaaaacagaagaaaatgttgtaacacatacttggattctcttccgtaaagtttcca 11812078  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 11815905 - 11815963
Alignment:
Q  246 tttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcca 304  Q
    ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||    
T  11815905 tttgataagagaagaaagtgttgtaacacgtacttggatcctctttcgtgaagtttcca 11815963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 11819923 - 11820032
Alignment:
Q  212 gaaatatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaagg 311  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||||||| || ||||| | | | |||||||| |||||||| || |||    
T  11819923 gaaatatgtgttactataatatgattaaaattaatttgataggagaagaaattgttgtaaaacatacttggatccacttccgtggagtttccaccggagg 11820022  T
Q  312 aggtgtgatg 321  Q
    |||| |||||    
T  11820023 aggtatgatg 11820032  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 11808678 - 11808751
Alignment:
Q  217 atgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctctt 290  Q
    |||||| ||||| || ||||| |||||| |||| ||||| |||||||||||||||||||||||| ||| |||||    
T  11808678 atgtgttaccattatatgatttaaattaatttggtaagacaagaaagtgttgtaacacgtacttggttcctctt 11808751  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 11809564 - 11809611
Alignment:
Q  144 ccataacatagccgcaattgatttgatgttgcatcccctaatgtttac 191  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  11809564 ccataacatggtcgcaattgatttgatgttgtatcccctaatgtttac 11809611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 11809659 - 11809712
Alignment:
Q  251 taagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttcca 304  Q
    |||||||||||||||||||||||||||||| | |  |||| |||||||||||||    
T  11809659 taagagaagaaagtgttgtaacacgtacttggatcatctttcgtgaagtttcca 11809712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 11812870 - 11812983
Alignment:
Q  215 atatgtgtcaccataatgtgattgaaattagtttgataagagaagaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggagg 314  Q
    |||||||| |||||| ||||| | |||||  ||||||||||||||||||| |  |||| ||||||| | | || || |||||||||||||| | ||||||    
T  11812870 atatgtgttaccatattgtgactaaaattgatttgataagagaagaaagtatactaactcgtacttggatcctgtttcgtgaagtttccattggaggagg 11812969  T
Q  315 tgtgatgtccatct 328  Q
    | ||| | ||||||    
T  11812970 tctgaggcccatct 11812983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 11815793 - 11815845
Alignment:
Q  139 tgtagccataacatagccgcaattgatttgatgttgcatcccctaatgtttac 191  Q
    |||| ||||||||| |||||||| |||||||||| | ||| ||||||||||||    
T  11815793 tgtaaccataacatggccgcaatagatttgatgtcgtatcacctaatgtttac 11815845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 15274379 - 15274306
Alignment:
Q  5 ctctcttgtcatgaacccaattgccattgaaatagtcacattgtttctcttgaggtttttccttttctgccaaa 78  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  15274379 ctctcttgtcattaatccaattgccattgaaatagtcacatggtttctcatgaggtttttccctttctgccaaa 15274306  T

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