View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_32 (Length: 332)
Name: NF9954_low_32
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 49 - 319
Target Start/End: Complemental strand, 23149857 - 23149587
Alignment:
| Q |
49 |
caaggataaaaatatattatgtgaactctggttcaagcagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaatct |
148 |
Q |
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| T |
23149857 |
caaggataaaaatatattatgggaaccctcgttcaaggagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaacct |
23149758 |
T |
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| Q |
149 |
ctggaattgcatggatatttgcacgggtataagcattcatttctcatggaaatactcttacaacattaccaattcaaaagtagagaaaatagacatataa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23149757 |
ttggaattgcatggatatttgcacgggtataagcattcatttctcatggaaatactcttacaacattaccaattcaaaagtagagaaaatagatatataa |
23149658 |
T |
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| Q |
249 |
gctctacaaccaaactctaaagtgatcttgagctaaaactaagatgactgggtactacgatccaccaataa |
319 |
Q |
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||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| || ||||| |||| |
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| T |
23149657 |
gctctacaaccaaactctaaattgattttgagctgaaacttagatgactgggtactaggacccacctataa |
23149587 |
T |
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