View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_35 (Length: 326)
Name: NF9954_low_35
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 9295339 - 9295627
Alignment:
| Q |
23 |
tctcttctattttaagcatatatattagtggagtagggnnnnnnnaatatttgattgctgaattaattttcctatttgatattgagatggataaaattag |
122 |
Q |
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| T |
9295339 |
tctcttctattttaagcatatatattagtggagtagggtttttttaatatttgattgctgaattaattttcctatttgatattgagatggataaaattag |
9295438 |
T |
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| Q |
123 |
catagtatgagaaaattgtacaagttaaatgatttttactttcctatttgaagttttatgcaatatagaaacagaaagacattcatgtatgataatccac |
222 |
Q |
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| T |
9295439 |
catagtatgagaaaattgtacaagttaaatgatttttactttcctattggaagtattatgcaataaagaaacagaaagacattcatgtatgataatccac |
9295538 |
T |
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| Q |
223 |
ctgcaaaaatcaaaattatgtttcctataggatttacaaatagaaaactcaaaggagaggttgaaaatgaagtttccaatgaatatttt |
311 |
Q |
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| T |
9295539 |
ctgcaaaaatcaaaatcatgtttcctataggatttacaaatagaaaactcaaaggagaggttgaaaatgaagtttccaatgaatatttt |
9295627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 9291380 - 9291428
Alignment:
| Q |
260 |
aaatagaaaactcaaaggagaggttgaaaatgaagtttccaatgaatat |
308 |
Q |
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| T |
9291380 |
aaatagaaaactcaaaggagagattgaaaatgtagcttccagtgaatat |
9291428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 12548597 - 12548544
Alignment:
| Q |
79 |
gctgaattaattttcctatttgatattgagatggataaaattagcatagtatga |
132 |
Q |
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| T |
12548597 |
gctgaattaattttcttatttgatattgaaaagaaaaaaattagcaaagtatga |
12548544 |
T |
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