View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_37 (Length: 295)

Name: NF9954_low_37
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_37
NF9954_low_37
[»] chr1 (9 HSPs)
chr1 (1-278)||(2818686-2818963)
chr1 (146-212)||(2613717-2613783)
chr1 (138-184)||(32002881-32002927)
chr1 (249-279)||(39590854-39590884)
chr1 (147-192)||(21015977-21016022)
chr1 (146-215)||(34083329-34083398)
chr1 (147-215)||(7925356-7925423)
chr1 (147-183)||(25524217-25524253)
chr1 (149-213)||(30798750-30798814)
[»] chr5 (11 HSPs)
chr5 (149-192)||(3955561-3955604)
chr5 (152-213)||(37054275-37054336)
chr5 (137-216)||(10199010-10199090)
chr5 (152-215)||(19248471-19248534)
chr5 (150-192)||(15105114-15105156)
chr5 (147-192)||(4763187-4763232)
chr5 (149-206)||(17672303-17672360)
chr5 (146-215)||(37932322-37932391)
chr5 (146-214)||(11637572-11637640)
chr5 (152-192)||(14681260-14681300)
chr5 (146-206)||(26409254-26409314)
[»] chr4 (15 HSPs)
chr4 (146-215)||(36478983-36479052)
chr4 (149-206)||(45029608-45029665)
chr4 (146-214)||(10336986-10337054)
chr4 (148-192)||(36071159-36071203)
chr4 (168-215)||(7922272-7922319)
chr4 (146-192)||(34595936-34595982)
chr4 (147-213)||(48955286-48955352)
chr4 (147-216)||(7230271-7230340)
chr4 (149-206)||(21266885-21266942)
chr4 (146-190)||(1657030-1657074)
chr4 (146-214)||(11949763-11949831)
chr4 (147-215)||(15988410-15988477)
chr4 (152-212)||(22411759-22411819)
chr4 (150-214)||(46676502-46676566)
chr4 (146-214)||(49473638-49473706)
[»] chr6 (3 HSPs)
chr6 (146-214)||(788859-788927)
chr6 (156-212)||(32409188-32409244)
chr6 (146-206)||(404164-404224)
[»] chr3 (6 HSPs)
chr3 (149-213)||(48376829-48376893)
chr3 (146-206)||(52119377-52119437)
chr3 (146-192)||(7859492-7859538)
chr3 (149-215)||(53633620-53633686)
chr3 (153-206)||(22843465-22843518)
chr3 (147-192)||(28595804-28595848)
[»] chr2 (4 HSPs)
chr2 (147-215)||(37320518-37320586)
chr2 (147-213)||(30243244-30243310)
chr2 (148-184)||(4238782-4238818)
chr2 (146-206)||(24593377-24593437)
[»] chr7 (6 HSPs)
chr7 (168-215)||(37930036-37930083)
chr7 (137-183)||(24099226-24099272)
chr7 (146-206)||(20103454-20103514)
chr7 (146-206)||(25251511-25251571)
chr7 (147-179)||(38821002-38821034)
chr7 (146-206)||(46987087-46987147)
[»] chr8 (4 HSPs)
chr8 (146-184)||(44632185-44632223)
chr8 (152-192)||(5179808-5179848)
chr8 (150-206)||(13477901-13477957)
chr8 (147-215)||(27750905-27750973)
[»] scaffold0011 (1 HSPs)
scaffold0011 (146-186)||(189972-190012)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2818963 - 2818686
Alignment:
Q  1 tgttaaacatattttgttccaacagaaggtagaaaagtgagatacaaaccctatttgtatgtttctcatctaacatgtctaaacgcttataggcgatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2818963 tgttaaacatattttgttccaacagaaggtagaaaagtgagatacaaactctatttgtatgtttctcatctaacatgtctaaacgcttataggcgatgaa 2818864  T
Q  101 ttagatttgtaacgaatttgagtaacannnnnnnnngtggtagtcgggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagata 200  Q
    ||||||||||||||||||||||||||          ||||||||||| ||| || ||| ||| |||||||||||||||||||||| || ||| |||||||    
T  2818863 ttagatttgtaacgaatttgagtaacgtttttttttgtggtagtcggattcaaatcccaaactttatatatattatgcattgtctctatcaagttagata 2818764  T
Q  201 agctcatgaggacaacgaatttgaatacctcgtataatttgagttgagttgaattgaataaattttgcttataaaaaa 278  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2818763 agctcatgaggacaacgaatttgattatctcgtataatttgagttgagttgaattgaataaattttgcttataaaaaa 2818686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 2613783 - 2613717
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgagga 212  Q
    ||||||||||||||||| ||| |||| ||||||||||||  |||||| | || |||||||| |||||    
T  2613783 gggttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgagga 2613717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 32002881 - 32002927
Alignment:
Q  138 tggtagtcgggttcgaaccccgaacattatatatattatgcattgtc 184  Q
    |||| ||||| |||||||||||||| ||||||||||||| |||||||    
T  32002881 tggtggtcggattcgaaccccgaaccttatatatattatacattgtc 32002927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 39590854 - 39590884
Alignment:
Q  249 ttgaattgaataaattttgcttataaaaaat 279  Q
    |||||||||||||||||||||||||||||||    
T  39590854 ttgaattgaataaattttgcttataaaaaat 39590884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 21016022 - 21015977
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    |||||||||||||||| ||| ||||||||||||||||  |||||||    
T  21016022 ggttcgaaccccgaaccttacatatattatgcattgttcttaccaa 21015977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 34083398 - 34083329
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||||| ||| ||| ||||||||||||||||  ||||||  | || |||||||||||| ||||    
T  34083398 gggttcgaaccccaaaccttacatatattatgcattgttcttaccatctgagttaagctcatgagtacaa 34083329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 7925423 - 7925356
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    |||| ||||||||||| ||  |||||||||||||||||| |||||| | || |||||||| ||||||||    
T  7925423 ggtttgaaccccgaaccttc-atatattatgcattgtctctaccaactgagctaagctcacgaggacaa 7925356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 25524217 - 25524253
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgt 183  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  25524217 ggttcgaaccccaaactttatatatattatgcattgt 25524253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 30798750 - 30798814
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggac 213  Q
    ||||||||||| |  ||| ||||||||||||||||| || |||||| || |||||||| ||||||    
T  30798750 ttcgaaccccggatcttacatatattatgcattgtccttgccaaatgagttaagctcacgaggac 30798814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 3955604 - 3955561
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  3955604 ttcgaaccccgaacattacatatattatgcattgtctttaccaa 3955561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 37054275 - 37054336
Alignment:
Q  152 gaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggac 213  Q
    ||||||||||| |||||||||||||||||||||  |||||| | || ||| |||||||||||    
T  37054275 gaaccccgaaccttatatatattatgcattgtccctaccaactgagctaaactcatgaggac 37054336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 10199090 - 10199010
Alignment:
Q  137 gtggtagtcggg-ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaac 216  Q
    ||||| |||||| ||||||||||  || |||||||||||||||||||||  |||||| | || |||||||| |||||||||    
T  10199090 gtggtggtcgggattcgaaccccacaccttatatatattatgcattgtccataccaactgagctaagctcacgaggacaac 10199010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 19248534 - 19248471
Alignment:
Q  152 gaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||| ||||||  |||||||||||||||||| |||||| | || |||||||| ||||||||    
T  19248534 gaaccccaaacattgcatatattatgcattgtctataccaactgagctaagctcacgaggacaa 19248471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 15105114 - 15105156
Alignment:
Q  150 tcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||    
T  15105114 tcgaaccccaaaccttatatatattatgcattgtttttaccaa 15105156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 4763187 - 4763232
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    |||| |||||||| || ||| |||||||||||||||||||||||||    
T  4763187 ggtttgaaccccggaccttacatatattatgcattgtctttaccaa 4763232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 17672303 - 17672360
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||||||| ||||||||||||||||| ||| ||| ||| | || ||||||||    
T  17672303 ttcgaaccccgaaccttatatatattatgcatcgtccttatcaactgagctaagctca 17672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 37932391 - 37932322
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    |||||||||||||| || ||  |||||||||||||||||  |||||| | || |||||||| ||||||||    
T  37932391 gggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggacaa 37932322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 11637572 - 11637640
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    ||||||||||||||||| ||  |||| ||||||||||||  |||||| | || |||||||| |||||||    
T  11637572 gggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgaggaca 11637640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 14681260 - 14681300
Alignment:
Q  152 gaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||||| || ||||||||||||||| ||||||||||    
T  14681260 gaaccccgaaccttctatatattatgcattatctttaccaa 14681300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 26409314 - 26409254
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||||||| || ||| |||||||||||||||||  |||||| | || ||||||||    
T  26409314 gggttcgaaccccggaccttacatatattatgcattgtccataccaactgagctaagctca 26409254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 36479052 - 36478983
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||| ||||| ||| |||||||||||||||||  ||||||   || |||||||||||||||||    
T  36479052 gggttcgaacctcgaaccttacatatattatgcattgtccataccaacagagctaagctcatgaggacaa 36478983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 45029608 - 45029665
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||| ||| ||| ||||||||||||||||| ||||||||| || ||||||||    
T  45029608 ttcgaaccccaaaccttacatatattatgcattgtccttaccaaatgagttaagctca 45029665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 10336986 - 10337054
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    ||||| ||||||||||| ||| ||| |||||||||||||||| |||| | || |||||||||| |||||    
T  10336986 gggtttgaaccccgaaccttacatacattatgcattgtctttgccaactgagttaagctcatggggaca 10337054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 36071203 - 36071159
Alignment:
Q  148 gttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||    
T  36071203 gttcgaaccccgaaccttacatatattatgcattgtccttaccaa 36071159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 7922272 - 7922319
Alignment:
Q  168 atatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  7922272 atatattatgcattgtctttaccaactgagataagctcacgtggacaa 7922319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 34595936 - 34595982
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    |||||| |||||||||| ||| ||||||||||||||||| |||||||    
T  34595936 gggttcaaaccccgaactttacatatattatgcattgtccttaccaa 34595982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 48955352 - 48955286
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggac 213  Q
    ||||||||||||| || ||  |||||||| |||||||| ||||||| | ||||||||||| ||||||    
T  48955352 ggttcgaaccccggactttgcatatattacgcattgtccttaccaactgagataagctcacgaggac 48955286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 7230340 - 7230271
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaac 216  Q
    |||| |||||||| || ||  ||||||||||||||||| ||||||| | || |||||||| |||||||||    
T  7230340 ggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaac 7230271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 21266885 - 21266942
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||| ||| ||| ||||||||||||||||||||| ||| | || ||||||||    
T  21266885 ttcgaaccccaaaccttacatatattatgcattgtctttaacaattgagctaagctca 21266942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 1657030 - 1657074
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttacc 190  Q
    ||||||||||||| ||| ||| ||||||||||||||||| |||||    
T  1657030 gggttcgaaccccaaaccttacatatattatgcattgtccttacc 1657074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 11949763 - 11949831
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    ||||| |||||||| || ||  |||||||||||||||||  |||||| | || ||||||||||||||||    
T  11949763 gggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcatgaggaca 11949831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 15988477 - 15988410
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||||| || || |||||| ||||||||||| ||||| || ||| |||||||| ||||||||    
T  15988477 ggttcgaaccccggaccttgtatatagtatgcattgtccttacc-aactagttaagctcacgaggacaa 15988410  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 22411819 - 22411759
Alignment:
Q  152 gaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgagga 212  Q
    ||||||||||| ||| |||||||||||||||||  |||||| | || || |||||||||||    
T  22411819 gaaccccgaaccttacatatattatgcattgtccataccaactgagctatgctcatgagga 22411759  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 46676502 - 46676566
Alignment:
Q  150 tcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    |||||||||| || ||  ||||||||||||||||| ||||||| | || |||||||||| |||||    
T  46676502 tcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcatggggaca 46676566  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 49473706 - 49473638
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    |||||||||||||| || ||  ||||||||||||||||| ||||||| |  | |||||||| |||||||    
T  49473706 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgggctaagctcacgaggaca 49473638  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 788927 - 788859
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggaca 214  Q
    ||||| |||| |||||| ||  ||||||||||||||||| ||||||| | ||||||||||| |||||||    
T  788927 gggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgaggaca 788859  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 32409188 - 32409244
Alignment:
Q  156 cccgaacattatatatattatgcattgtctttaccaaattagataagctcatgagga 212  Q
    ||||||| ||| ||||||||||||||||||||||||| | || |||| |||||||||    
T  32409188 cccgaaccttacatatattatgcattgtctttaccaactcagttaagttcatgagga 32409244  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 404224 - 404164
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    ||||||||||| || |||||  ||||||||||||||||| ||||||| | || ||||||||    
T  404224 gggttcgaacctcggacattgcatatattatgcattgtccttaccaactaagttaagctca 404164  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 48376893 - 48376829
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggac 213  Q
    |||||||||| ||| ||| |||||||||||||| |||||||||| | || |||||||| ||||||    
T  48376893 ttcgaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacgaggac 48376829  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 52119437 - 52119377
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    ||||||||||||||||| ||  ||||||||||||||||| ||||||| | || ||||||||    
T  52119437 gggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagctca 52119377  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 7859492 - 7859538
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||||||||||| ||| |||||||||||||| ||| ||||||    
T  7859492 gggttcgaaccccgaaccttacatatattatgcattatctataccaa 7859538  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 53633620 - 53633686
Alignment:
Q  149 ttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||| || ||| |||||||||||||| || ||||||| | || |||||||| ||||||||    
T  53633620 ttcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgaggacaa 53633686  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 22843518 - 22843465
Alignment:
Q  153 aaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||| ||| |||||||||||||||||||||| || | || ||||||||    
T  22843518 aaccccgaaccttacatatattatgcattgtctttactaactgagctaagctca 22843465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 28595848 - 28595804
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||    
T  28595848 ggttcgaaccc-gaactttgtatatattatgcattgtctttaccaa 28595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 37320518 - 37320586
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    |||||||||| ||||| ||  ||||||||||||||||||||||||| | || |||||||| | ||||||    
T  37320518 ggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacgtggacaa 37320586  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 30243310 - 30243244
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggac 213  Q
    |||| ||||||||||| || ||||||||||||||||||| |||||| | || |||| ||| ||||||    
T  30243310 ggtttgaaccccgaaccttgtatatattatgcattgtctctaccaactgagctaagttcacgaggac 30243244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 4238818 - 4238782
Alignment:
Q  148 gttcgaaccccgaacattatatatattatgcattgtc 184  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  4238818 gttcgaaccccgaaccttacatatattatgcattgtc 4238782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 24593437 - 24593377
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||||||| || ||  ||||||||||||||||| ||||||| | || ||||||||    
T  24593437 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctca 24593377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 37930083 - 37930036
Alignment:
Q  168 atatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||||||||| ||||||| | ||||||||||| ||||||||    
T  37930083 atatattatgcattgtccttaccaactgagataagctcacgaggacaa 37930036  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 24099226 - 24099272
Alignment:
Q  137 gtggtagtcgggttcgaaccccgaacattatatatattatgcattgt 183  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  24099226 gtggtggtcgggttcaaaccccgaaccttacatatattatgcattgt 24099272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 20103454 - 20103514
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||||||| || || || ||||||||||||||| ||||||| | || ||||||||    
T  20103454 gggttcgaaccccggaccttgtaaatattatgcattgtccttaccaactgagttaagctca 20103514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 25251571 - 25251511
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    ||||| ||||||| ||| |||||||||||||||||||| | |||||| | || ||||||||    
T  25251571 gggtttgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctca 25251511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 38821034 - 38821002
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgca 179  Q
    |||||||||||||||||||| ||||||||||||    
T  38821034 ggttcgaaccccgaacattaaatatattatgca 38821002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 46987147 - 46987087
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    |||||||||||||| || ||  ||||||||||||||||| ||||||| | || ||||||||    
T  46987147 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctca 46987087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 44632185 - 44632223
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtc 184  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  44632185 gggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 5179848 - 5179808
Alignment:
Q  152 gaaccccgaacattatatatattatgcattgtctttaccaa 192  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  5179848 gaaccccgaaccttgtatatattatgcattgtccttaccaa 5179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 13477957 - 13477901
Alignment:
Q  150 tcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctca 206  Q
    ||||||| ||||||||  ||||||||||||||||| ||||||| | || ||||||||    
T  13477957 tcgaacctcgaacattgcatatattatgcattgtccttaccaactcagctaagctca 13477901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 27750905 - 27750973
Alignment:
Q  147 ggttcgaaccccgaacattatatatattatgcattgtctttaccaaattagataagctcatgaggacaa 215  Q
    ||||||||||||| || ||  |||||||||||| |||| ||||||| | || |||||||| ||||||||    
T  27750905 ggttcgaaccccggaccttgcatatattatgcactgtccttaccaactgagctaagctcacgaggacaa 27750973  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 189972 - 190012
Alignment:
Q  146 gggttcgaaccccgaacattatatatattatgcattgtctt 186  Q
    ||||| ||||||||||| ||| |||||||||||||||||||    
T  189972 gggtttgaaccccgaaccttacatatattatgcattgtctt 190012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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