View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_38 (Length: 291)
Name: NF9954_low_38
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 33197110 - 33196918
Alignment:
| Q |
93 |
tgaggccgcaacatcaatcatttagaatttactaactaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatg |
192 |
Q |
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| T |
33197110 |
tgaggccgcaacatcaatcatttagaatttactaactaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatg |
33197011 |
T |
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| Q |
193 |
aattttctgagtaaaaactctggtaagtctttctaactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccata |
285 |
Q |
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| T |
33197010 |
aattttctgagtaaaaactctggtaagtctttctaactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccata |
33196918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 285
Target Start/End: Complemental strand, 10151122 - 10150964
Alignment:
| Q |
127 |
actaacctgtggtcctgttcccatatcaggtgcaggaacatccatgtgagttccaattagatcatgaattttctgagtaaaaactctggtaagtctttct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
10151122 |
actaacctgtggtcctgttcccatatcaggtgcaggcacatcagtatgaactccaataagatcatgaatcttctgagtaaaaactctagtaagcctttct |
10151023 |
T |
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| Q |
227 |
aactcggatatacttaattctgaggggttacaccctatccctcctttggcaccaccata |
285 |
Q |
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||||| || |||||| ||||| |||| | ||||||||||||||||||||||||||| |
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| T |
10151022 |
aactcagaagcacttaactctgaagggtcaacccctatccctcctttggcaccaccata |
10150964 |
T |
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