View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9954_low_4 (Length: 605)

Name: NF9954_low_4
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9954_low_4
NF9954_low_4
[»] chr1 (6 HSPs)
chr1 (3-154)||(47189299-47189450)
chr1 (71-182)||(51285250-51285361)
chr1 (81-187)||(48494886-48494992)
chr1 (82-182)||(47508240-47508340)
chr1 (124-182)||(5733165-5733223)
chr1 (124-182)||(12307935-12307993)
[»] chr6 (4 HSPs)
chr6 (355-475)||(4150633-4150753)
chr6 (202-319)||(4150765-4150890)
chr6 (86-167)||(11139353-11139434)
chr6 (82-182)||(92312-92412)
[»] chr7 (3 HSPs)
chr7 (71-144)||(32635363-32635436)
chr7 (82-182)||(37125557-37125657)
chr7 (138-182)||(11033491-11033535)
[»] chr8 (1 HSPs)
chr8 (82-182)||(39312538-39312638)
[»] scaffold0026 (1 HSPs)
scaffold0026 (110-179)||(91565-91634)
[»] scaffold1342 (1 HSPs)
scaffold1342 (124-182)||(1231-1289)
[»] chr2 (3 HSPs)
chr2 (124-182)||(4009258-4009316)
chr2 (98-187)||(36620177-36620266)
chr2 (85-182)||(43326105-43326202)
[»] chr4 (1 HSPs)
chr4 (82-182)||(55403338-55403438)
[»] chr5 (1 HSPs)
chr5 (85-178)||(13627363-13627456)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 47189450 - 47189299
Alignment:
Q  3 tggtcgagagagaagaaagttgaactcgcgcaaggccagacagaagagagaagagtgttgtttcagaaaaaagtgatagtggcatggttgtaaatttcat 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  47189450 tggtctagagagaagaaagttgaactcgcgcaaggccagacagaagagagaagagcgttgtttcagaaaaaagtgatagtgtcatggttgtatatttcat 47189351  T
Q  103 attaactcaagggtattttgataatttctcaaaaataatgggtaggccatgg 154  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  47189350 attaactcaagggtattttggtaatttcccaaaaataatgggtaggccatgg 47189299  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 51285361 - 51285250
Alignment:
Q  71 aaaagtgatagtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtcccca 170  Q
    ||||||||  |||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||  |||||||| | | |||||||||||    
T  51285361 aaaagtgagggtggcatggttgtagattttatattaacttaagggtattttggtaatttctcaaaaataatggggtggccatggccttcccctgtcccca 51285262  T
Q  171 cgtggctccgcc 182  Q
    ||||||||||||    
T  51285261 cgtggctccgcc 51285250  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 48494886 - 48494992
Alignment:
Q  81 gtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccg 180  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||  |  ||||| ||| |||||||||||||||| ||||    
T  48494886 gtggcatggttgtaaatttcatattaactcaagggtattttggtaattttccacaaataatgggacgatcatggccatcccctgtccccacgtggttccg 48494985  T
Q  181 ccgctgt 187  Q
    || ||||    
T  48494986 ccactgt 48494992  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 47508340 - 47508240
Alignment:
Q  82 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 181  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||   ||| | |||||  |||||||| ||| |||||||| |||||||||||||    
T  47508340 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttccacaaattgatggggtggccatggccatcccctgtcctcacgtggctccgc 47508241  T
Q  182 c 182  Q
    |    
T  47508240 c 47508240  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 5733223 - 5733165
Alignment:
Q  124 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    |||||||||| ||||||||||||||| |||| ||| ||| ||||||| |||||||||||    
T  5733223 taatttctcataaataatgggtaggctatggccatccccagtccccaagtggctccgcc 5733165  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 12307935 - 12307993
Alignment:
Q  124 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    ||||||| || || ||||||||||||||||| ||| ||||||||||| | |||||||||    
T  12307935 taatttcacagaactaatgggtaggccatggccataccctgtccccatgcggctccgcc 12307993  T

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Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 355 - 475
Target Start/End: Complemental strand, 4150753 - 4150633
Alignment:
Q  355 tgatcgcagatggaggagccctatggcataaagccaaaaatcaaccattttaagccgccatggcgctgccattcttcacaaattgtacatggcgtttgtt 454  Q
    ||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||  |||||||||||||    
T  4150753 tgatcgcggatggaggagcagtatggcagaaagccaaaaatcaaccattttaagccaccaaggcgctgccatccttcacaaattggccatggcgtttgtt 4150654  T
Q  455 aaaaaattcgccaccgcaatc 475  Q
    |||||||| ||||||||||||    
T  4150653 aaaaaatttgccaccgcaatc 4150633  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 202 - 319
Target Start/End: Complemental strand, 4150890 - 4150765
Alignment:
Q  202 aagtgaaaattaaatgagtataaatagctgaaagtaattaaattaactaaaaactatagct-aaaagtaa-aactcgaacaaactagt------tgagta 293  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||  ||||||||||||      ||| ||    
T  4150890 aagtgaaaattgaatgagtataaatagctgaaagtaaataaattaactaaaaactatagctaaaaagtaacaacctgaacaaactagttactaatgacta 4150791  T
Q  294 actcgacaaatccaaaaacgatccaa 319  Q
    ||||| ||||||||||||||||||||    
T  4150790 actcggcaaatccaaaaacgatccaa 4150765  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 11139434 - 11139353
Alignment:
Q  86 atggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtcc 167  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||  ||||||||||| ||||||||| ||| ||| ||||    
T  11139434 atggttgtaaatttcattttaacctaagggtattttgataatttctataaaataatggggaggccatggccatccccagtcc 11139353  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 92412 - 92312
Alignment:
Q  82 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 181  Q
    ||||||||||||||| || | ||||  |||| |||||| |  ||||||| || || ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  92412 tggcatggttgtaaaattaagattatatcaaaggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgc 92313  T
Q  182 c 182  Q
    |    
T  92312 c 92312  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 32635436 - 32635363
Alignment:
Q  71 aaaagtgatagtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatggg 144  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  32635436 aaaagtgagggtggcatggttgtaaatttcatattaactcaagggtattttggtaatttctcataaataatggg 32635363  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 37125657 - 37125557
Alignment:
Q  82 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 181  Q
    ||||||||||||||| || | ||||  ||||||||||| |  |||||||  | || ||||||||||||||||| ||| | ||||||||| ||||||||||    
T  37125657 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcaaagaattaatgggtaggccatggccatactctgtccccatgtggctccgc 37125558  T
Q  182 c 182  Q
    |    
T  37125557 c 37125557  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 11033535 - 11033491
Alignment:
Q  138 taatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    |||||||  |||||||| |||||||||||| ||||||||||||||    
T  11033535 taatgggatggccatggccattccctgtccacacgtggctccgcc 11033491  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 39312638 - 39312538
Alignment:
Q  82 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 181  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||   ||| |||||||  |||||||| ||| || ||||| |||||||||||||    
T  39312638 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttccacaaattaatggggtggccatggccatcccatgtcctcacgtggctccgc 39312539  T
Q  182 c 182  Q
    |    
T  39312538 c 39312538  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 91634 - 91565
Alignment:
Q  110 caagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctcc 179  Q
    |||||||||| |||||||||| || ||||| |||||||||||||| ||| |||||||| |||||||||||    
T  91634 caagggtattatgataatttcacagaaatactgggtaggccatggccataccctgtcctcacgtggctcc 91565  T

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Target: scaffold1342 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 1289 - 1231
Alignment:
Q  124 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  1289 taatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgcc 1231  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 4009316 - 4009258
Alignment:
Q  124 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  4009316 taatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgcc 4009258  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 36620177 - 36620266
Alignment:
Q  98 ttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgccgctgt 187  Q
    |||| |||| || ||||||||| || ||||||| ||||| ||||||| ||| ||| | ||| ||| |||| |||||||||||||| ||||    
T  36620177 ttcaaattagcttaagggtattatggtaatttcacaaaattaatgggcaggacatcgccatacccagtcctcacgtggctccgccactgt 36620266  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 43326202 - 43326105
Alignment:
Q  85 catggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 182  Q
    |||||||||||| || | ||||  ||||||||||| |  ||||||| || || ||||||||||||||||   || |||||||| || |||||||||||    
T  43326202 catggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggtaggccatgactataccctgtcctcatgtggctccgcc 43326105  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 55403438 - 55403338
Alignment:
Q  82 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 181  Q
    ||||||||||||||| || | ||||  ||||||||||| |  ||||||| || || ||||||||||||||||  ||| | ||||||||| ||||||||||    
T  55403438 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggtaggccatgaccatactctgtccccatgtggctccgc 55403339  T
Q  182 c 182  Q
    |    
T  55403338 c 55403338  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 13627363 - 13627456
Alignment:
Q  85 catggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctc 178  Q
    |||||||||||| ||||| ||||  |||| |||||||| |||||| |  ||| |||||||  |||||||| ||| |||||||| ||||||||||    
T  13627363 catggttgtaaaattcattttaatccaagagtattttggtaatttttacaaattaatggggtggccatggccatcccctgtcctcacgtggctc 13627456  T

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