View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9954_low_40 (Length: 289)
Name: NF9954_low_40
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 25320633 - 25320817
Alignment:
| Q |
11 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25320633 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
25320732 |
T |
|
| Q |
111 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaaggagagagtgcaaaaaagaagg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25320733 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaatatgtcaagaataaaag--gagagtgcaaaaaagaagg |
25320817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 25326440 - 25326588
Alignment:
| Q |
11 |
agcagagagtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatcc |
110 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |||||||||| || |||| ||| ||||| ||||||||||| || || ||| | | ||||| |
|
|
| T |
25326440 |
agcagagagcttaggttgtctcttcaagtttggatccttcatatctatgtagtatagaccaaaactttcttcatatccactcagtatttcaagcacatcc |
25326539 |
T |
|
| Q |
111 |
aataagcaccatacaaaataacctttgacatttgatccactcctttcaa |
159 |
Q |
| |
|
| ||| ||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
25326540 |
atgaaggaccatacaaaataaccttttatattcgatccactcctttcaa |
25326588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 5216370 - 5216486
Alignment:
| Q |
18 |
agtttaggttgtctcttcaaacttggatcgttcatatctacgtgatataagccataacttatttcatatccacccattaattcgaacgcatccaataagc |
117 |
Q |
| |
|
||||||||||| ||| |||| ||||||| | || ||||| || |||||||||||||||| |||||||||||| | ||| || ||| ||||||| ||| |
|
|
| T |
5216370 |
agtttaggttgcctcctcaaggttggatcttccaaatctatgtaatataagccataacttgcttcatatccacctagtaactcaaacacatccaaaaagg |
5216469 |
T |
|
| Q |
118 |
accatacaaaataacct |
134 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
5216470 |
cccatacaaagtaacct |
5216486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University