View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_42 (Length: 264)
Name: NF9954_low_42
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 2654656 - 2654421
Alignment:
| Q |
19 |
atgtagcccttctttaaggaatttagatacatggaattttgtacaccagttctcaaattaaataagaatatttgacagacgtgattttgattttataaaa |
118 |
Q |
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| T |
2654656 |
atgtagcccttctttaaggaatttagatacatggaatttcgtacaccagttctcaaattaaataagaatatttgacagacgtgattttgattttataaaa |
2654557 |
T |
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| Q |
119 |
ttgatttggttgaatgtgtgtattcatatgcacctatcaaataccaggaacatgtatttaagaatacagtcatgctattagtttccctgtacttattttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2654556 |
ttgatttggttgaatgtgtgtattcatatgcacctatcaaataccaggaacatgtatttaagaatacagtcatgctattagtttccctgtacttattttt |
2654457 |
T |
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| Q |
219 |
ccgcaatttaaaatcatgtttggtcaagtacctttg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2654456 |
ccgcaatttaaaatcatgtttggtcaagtacctttg |
2654421 |
T |
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