View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9954_low_44 (Length: 253)
Name: NF9954_low_44
Description: NF9954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9954_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2392129 - 2391894
Alignment:
| Q |
1 |
ttagcttcaatttaaaaaatcaaaatcaatagatcatgtataaaaagaaggggtaataggaatgtgttttctacagggaacatacaaaacattgcaaata |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392129 |
ttagcttcaattaaaaaaatcaaaatcaatagatcatgtataaaaagaaggggtaataggaatgtgttttctacagggaacatacaaaacattgcaaata |
2392030 |
T |
|
| Q |
101 |
aaagaaaaactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatggaaaatctgttaaagataaataaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2392029 |
aaagaaaaactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatggaaaatctg-taaagataaataaata |
2391931 |
T |
|
| Q |
201 |
tgtgaaaccccaaaagtatggttgagaccgaaattct |
237 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
2391930 |
tgtgaaactccaaaagtatggttgagaccgaaattct |
2391894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 2380983 - 2380824
Alignment:
| Q |
25 |
atcaatagatcatgtataaaaagaag-gggtaa-taggaatgtgttttctacagggaacatacaaaacattg--caaataaaagaaaaac-tcaaagttg |
119 |
Q |
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||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||| ||||| |
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| T |
2380983 |
atcaatagaacgtgtataaaaagaaaagggtaactaggaatgtgttttctacagggaatatacaaaacattgagcaaataaaataaaaacctcatagttg |
2380884 |
T |
|
| Q |
120 |
gataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatggaaaa |
179 |
Q |
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| T |
2380883 |
gataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatgaaaaa |
2380824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 2382262 - 2382170
Alignment:
| Q |
146 |
caatacctatatttgcaggaacaaacatggaaaatctgtta-aagataaataaatatgtgaaaccccaaaagtatggttgagaccgaaattct |
237 |
Q |
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||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
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| T |
2382262 |
caatacctatatttgcaggaacaaacatgaaaaatctgtcagaagataaatgaatatgtgaaaccccaaaagtagggttgagacccaaattct |
2382170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 2382362 - 2382270
Alignment:
| Q |
4 |
gcttcaatttaaaaaatcaaaatcaatagatcatgtataaaaagaaggggtaataggaatgtgttttctacagggaacatacaaaacattgca |
96 |
Q |
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|||||| || ||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2382362 |
gcttcatttaaaaaaatcagcatcaatatatcaagaataaaaaaaaggggtaataggaatgtgttttctacagggaacatacaaagcattgca |
2382270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 2383700 - 2383620
Alignment:
| Q |
82 |
atacaaaacattgca---aataaaagaaa-aactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgca |
162 |
Q |
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||||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
2383700 |
atacaaaacattgcagcaaataaaagtaataactcaaagttggataaatcatatcta----aataaataactacctatatttgca |
2383620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 2546086 - 2546128
Alignment:
| Q |
129 |
tatctaacttaataaatcaatacctatatttgcaggaacaaac |
171 |
Q |
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|
| T |
2546086 |
tatctaactcaataaatcaatacatatatttgcaagaacaaac |
2546128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 39535846 - 39535804
Alignment:
| Q |
105 |
aaaaactcaaagttggataaatcatatctaacttaataaatca |
147 |
Q |
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|||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
39535846 |
aaaaactcaaagttggataaataatatctaactcaatacatca |
39535804 |
T |
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